Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 9.9e-58 226.9 141 100.0
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 5.6e-53 211.1 142 93.0
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 6.9e-43 177.6 109 85.3
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 9.0e-43 177.2 108 83.3
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 9.0e-43 177.2 108 83.3
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.2e-42 176.8 108 83.3
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.2e-42 176.8 108 83.3
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.5e-42 176.4 109 83.5
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-41 173.7 108 82.4
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-41 173.3 108 81.5
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 2.2e-41 172.6 114 83.3
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 4.9e-41 171.4 108 80.6
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 4.9e-41 171.4 108 80.6
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 6.5e-41 171.0 108 82.4
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 7.1e-40 167.5 108 80.6
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 9.6e-37 157.1 112 78.6
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 4.2e-32 141.7 96 75.0
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 2.5e-29 132.5 120 60.0
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 7.4e-29 131.0 119 60.5
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 2.6e-26 122.5 117 59.0
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 4.5e-26 121.7 117 59.0
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-25 120.6 116 58.6
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-25 120.6 116 58.6
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.0e-25 120.6 116 58.6
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 1.0e-25 120.6 116 58.6
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.3e-25 120.2 121 57.9
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-24 116.3 114 57.0
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 2.5e-24 115.9 122 54.9
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.2e-23 113.6 123 57.7
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 1.6e-23 113.2 126 55.6
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 1.6e-23 113.2 126 55.6
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.1e-23 112.8 118 55.9
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 3.6e-23 112.1 119 54.6
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.6e-23 111.7 117 54.7
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.0e-22 110.5 120 56.7
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.3e-22 109.4 117 54.7
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 3.9e-22 108.6 118 55.1
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 3.9e-22 108.6 118 55.1
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.1e-22 108.2 119 54.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 1.1e-21 107.1 114 54.4
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 4.4e-21 105.1 115 52.2
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 5.7e-21 104.8 122 54.1
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 6.3e-20 101.3 115 52.2
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-18 96.3 101 56.4
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 8.5e-17 90.9 93 55.9
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-10 69.7 38 86.8
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 2.0e-10 69.7 38 86.8
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.7e-09 66.6 48 68.8
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.1e-08 63.9 44 70.5
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.1e-08 63.9 111 39.6
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 5.5e-08 61.6 48 68.8
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 7.2e-08 61.2 156 34.6
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.2e-07 60.5 62 51.6
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.2e-07 60.5 48 62.5
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.2e-07 60.5 46 65.2
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.6e-07 60.1 68 48.5
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.1e-07 59.7 48 62.5
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.1e-07 59.7 48 62.5
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 2.1e-07 59.7 72 50.0
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 2.7e-07 59.3 132 34.1
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 2.7e-07 59.3 47 68.1
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 2.7e-07 59.3 45 64.4
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.6e-07 58.9 46 67.4
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 3.6e-07 58.9 111 40.5
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 3.6e-07 58.9 40 70.0
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.7e-07 58.5 121 41.3
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 4.7e-07 58.5 38 73.7
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.7e-07 58.5 38 73.7
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 4.7e-07 58.5 34 76.5
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 8.0e-07 57.8 60 55.0
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 8.0e-07 57.8 121 34.7
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.0e-06 57.4 54 61.1
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.0e-06 57.4 37 73.0
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.4e-06 57.0 49 61.2
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 81 44.4
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.4e-06 57.0 47 59.6
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.4e-06 57.0 44 65.9
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 44 65.9
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 2.3e-06 56.2 86 44.2
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 3.0e-06 55.8 48 62.5
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.0e-06 55.5 114 36.0
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-06 55.5 38 71.1
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 4.0e-06 55.5 43 62.8
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.2e-06 55.1 48 60.4
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.2e-06 55.1 57 56.1
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 6.7e-06 54.7 41 70.7
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 6.7e-06 54.7 48 60.4
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 8.8e-06 54.3 93 37.6
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 8.8e-06 54.3 43 62.8
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.8e-06 54.3 108 39.8


User provided reference genes

Program Settings