Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 0.0e+00 1856.6 937 100.0
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 0.0e+00 1741.1 938 93.8
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 0.0e+00 1660.6 938 89.8
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 0.0e+00 1655.2 944 89.3
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 0.0e+00 1624.8 944 87.4
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 0.0e+00 1612.4 943 87.0
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1551.2 940 84.9
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1509.2 929 83.3
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 0.0e+00 1501.9 950 82.1
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1494.2 943 82.4
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 0.0e+00 1484.2 962 80.9
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 0.0e+00 1429.1 948 78.9
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1360.1 934 77.3
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1319.3 973 73.6
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 0.0e+00 1273.5 948 71.4
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1217.6 956 70.5
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.7e-276 955.7 983 54.2
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.2e-273 946.8 944 54.8
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.8e-272 943.0 973 53.2
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 5.8e-271 937.9 963 53.2
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 7.6e-271 937.6 948 54.1
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.7e-270 936.4 976 53.1
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 5.4e-269 931.4 979 52.8
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 2.1e-268 929.5 983 53.9
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 9.6e-266 920.6 968 52.8
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.4e-264 916.8 955 53.3
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.4e-264 916.0 954 54.1
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 3.1e-264 915.6 959 53.4
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.9e-264 914.4 969 52.2
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.2e-262 909.4 567 82.9
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.1e-260 902.9 967 52.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.3e-259 900.2 967 51.6
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.7e-259 899.8 977 52.2
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 6.6e-259 897.9 962 53.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.5e-258 896.7 976 51.6
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 8.1e-257 891.0 946 52.7
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.8e-256 889.8 989 51.9
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.6e-255 885.9 989 51.7
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 3.4e-255 885.6 960 50.5
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 9.9e-255 884.0 961 50.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.9e-255 884.0 989 51.7
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 3.8e-254 882.1 955 50.8
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 6.0e-252 874.8 960 50.6
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 3.0e-251 872.5 938 52.3
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.1e-250 870.5 960 51.5
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 5.6e-250 868.2 955 52.1
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 9.6e-250 867.5 956 50.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.6e-249 866.7 989 50.2
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 3.7e-249 865.5 958 49.6
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 8.1e-249 864.4 976 51.2
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 8.1e-249 864.4 936 52.5
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 8.1e-249 864.4 955 50.7
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.4e-248 863.6 954 49.9
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 4.0e-248 862.1 909 51.8
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 9.0e-248 860.9 964 50.5
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.5e-247 860.1 936 50.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.0e-246 857.4 953 50.5
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.9e-246 855.9 957 49.7
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.9e-245 853.2 973 49.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.9e-245 853.2 929 50.9
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.9e-245 853.2 936 50.3
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 5.5e-245 851.7 960 50.1
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-244 850.5 974 50.3
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.2e-244 850.5 940 51.1
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.6e-244 850.1 931 51.5
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 3.5e-244 849.0 907 52.0
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.6e-244 848.6 973 49.6
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 4.6e-244 848.6 952 50.3
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.3e-243 846.3 1000 48.9
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.3e-242 842.4 968 49.1
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 5.7e-242 841.6 951 49.1
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-241 840.5 976 50.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.4e-240 837.0 930 50.8
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.8e-240 836.6 957 50.5
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 5.3e-240 835.1 959 49.1
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.2e-239 833.9 957 49.4
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 2.6e-239 832.8 899 51.9
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 2.9e-238 829.3 910 51.1
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 2.9e-238 829.3 972 49.4
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.5e-236 822.4 966 49.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 8.7e-235 817.8 974 48.5
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 9.7e-234 814.3 958 49.3
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.7e-233 812.4 959 48.1
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.1e-232 810.8 938 49.7
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.8e-232 810.1 971 48.1
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.8e-232 810.1 971 48.1
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 6.9e-232 808.1 948 49.3
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.2e-231 807.4 707 58.6
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 7.7e-231 804.7 933 48.7
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.6e-228 795.4 900 49.9
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.8e-227 793.5 917 49.4
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.1e-226 790.8 658 60.9
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 2.5e-226 789.6 705 58.4
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 9.1e-224 781.2 954 48.0
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.4e-221 773.9 823 52.0
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.3e-219 766.5 1021 44.4
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.1e-218 764.2 963 47.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.5e-213 747.3 941 46.7
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 9.4e-213 744.6 833 50.8
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 3.6e-212 742.7 705 55.7
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 1.0e-211 741.1 955 45.9
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 6.5e-206 721.8 979 44.4
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.9e-198 696.4 616 59.3
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.5e-194 684.1 804 49.4
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.3e-193 681.0 957 42.0
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 5.4e-192 675.6 784 47.8
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 9.1e-192 674.9 958 42.7
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.5e-189 667.5 673 51.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 6.6e-182 642.1 935 42.9
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.1e-165 588.2 733 45.2
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.6e-162 577.0 435 65.5
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.3e-161 574.7 434 64.5
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 7.1e-160 568.9 726 43.8
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.1e-159 567.4 744 45.8
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 5.2e-155 552.7 851 40.7
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.3e-153 548.1 624 46.3
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.1e-147 526.9 731 42.0
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.4e-145 519.2 961 37.3
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.3e-140 505.0 439 62.2
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.8e-139 501.1 672 44.5
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.2e-136 490.0 694 45.4
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.6e-116 424.9 661 39.0
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.1e-111 407.9 729 37.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.4e-110 405.2 253 82.2
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.3e-108 398.7 326 70.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 6.3e-108 396.4 765 34.0
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 3.3e-101 374.0 475 44.0
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.2e-100 371.3 286 64.7
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.2e-100 371.3 518 45.4
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 9.4e-88 329.3 541 39.9
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 3.5e-82 310.8 266 59.4
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.8e-78 298.5 279 63.1
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-71 275.4 193 67.9
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.7e-65 255.4 215 63.3
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 6.6e-65 253.4 234 55.6
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 4.3e-64 250.8 243 55.1
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-58 232.6 175 65.1
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 6.2e-47 193.7 151 62.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.9e-46 189.9 157 61.1
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.6e-45 186.8 132 67.4
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.8e-38 165.6 175 46.9
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.4e-38 165.2 312 37.2
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 5.2e-38 164.1 118 77.1
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 9.9e-37 159.8 114 60.5
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 3.2e-35 154.8 543 26.5
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 2.1e-26 125.6 118 66.1
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 2.7e-26 125.2 118 66.1
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 5.3e-22 110.9 191 39.8
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 5.3e-22 110.9 620 23.1
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.3e-22 110.9 78 62.8
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 1.3e-20 106.3 300 33.7
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 8.4e-12 77.0 65 63.1
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.3e-11 73.6 42 83.3
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 6.0e-10 70.9 40 70.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.4e-06 58.9 52 51.9


User provided reference genes

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