Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.9e-136 490.0 627 100.0
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 4.9e-115 419.9 627 75.3
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 7.6e-100 369.4 633 88.0
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 5.1e-80 303.5 213 69.5
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.1e-79 302.4 630 62.7
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.1e-79 302.4 630 62.7
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.1e-42 179.5 210 46.7
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.1e-41 175.3 212 47.2
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.4e-40 172.6 201 48.3
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.2e-40 170.6 226 43.4
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 8.9e-40 169.9 213 45.5
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 3.4e-39 167.9 207 45.9
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 7.5e-39 166.8 212 46.2
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 9.8e-39 166.4 214 44.4
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 8.3e-38 163.3 210 44.8
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 8.3e-38 163.3 210 44.8
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 3.1e-37 161.4 209 42.6
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 7.0e-37 160.2 212 42.5
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.9e-35 154.8 209 42.6
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 3.9e-35 154.5 212 42.9
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.2e-31 142.9 200 43.0
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 1.3e-27 129.4 163 42.3
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.3e-27 128.6 206 36.4
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 1.1e-26 126.3 182 42.3
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.1e-26 126.3 197 36.5
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.1e-26 126.3 135 46.7
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 4.3e-26 124.4 215 34.0
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.6e-25 122.5 197 35.5
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 4.7e-25 120.9 196 37.8
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.1e-24 119.8 122 52.5
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.4e-24 119.4 134 44.8
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.8e-24 119.0 196 34.7
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.3e-24 118.6 146 45.2
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 2.3e-24 118.6 130 46.9
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.1e-24 118.2 128 47.7
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 5.2e-24 117.5 191 36.1
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 2.0e-23 115.5 212 33.0
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 2.0e-23 115.5 172 38.4
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 4.9e-22 110.9 129 41.1
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.4e-21 109.4 161 37.9
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.9e-21 109.0 133 42.1
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 9.2e-21 106.7 137 41.6
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.2e-20 106.3 183 36.1
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.2e-20 106.3 133 41.4
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 1.6e-20 105.9 129 40.3
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 6.0e-20 104.0 178 37.6
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.9e-19 101.3 148 37.8
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 5.1e-19 100.9 161 36.0
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.9e-18 99.0 131 39.7
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 2.5e-18 98.6 204 33.8
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 4.3e-18 97.8 161 36.6
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 5.6e-18 97.4 129 41.1
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 7.3e-18 97.1 163 36.8
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 7.3e-18 97.1 129 40.3
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 9.5e-18 96.7 129 38.8
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 9.5e-18 96.7 173 34.7
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 9.5e-18 96.7 131 38.9
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.2e-17 96.3 194 35.1
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.8e-17 95.1 122 38.5
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 3.6e-17 94.7 194 33.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 4.7e-17 94.4 151 38.4
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 1.1e-16 93.2 214 28.5
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.4e-16 92.8 181 35.4
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 2.3e-16 92.0 208 31.2
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 4.0e-16 91.3 168 32.7
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 5.2e-16 90.9 83 50.6
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 6.8e-16 90.5 140 33.6
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.2e-15 89.7 161 31.7
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 2.0e-15 89.0 128 38.3
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 3.4e-15 88.2 161 31.1
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 5.8e-15 87.4 201 30.3
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 9.9e-15 86.7 177 31.6
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 2.9e-14 85.1 192 33.9
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 3.7e-14 84.7 126 35.7
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.3e-14 83.6 205 31.7
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 8.3e-14 83.6 222 31.1
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 3.2e-13 81.6 126 34.9
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 7.1e-13 80.5 199 29.6
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.2e-12 79.7 170 31.2
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 1.2e-12 79.7 179 33.0
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.5e-12 78.2 172 32.6
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 1.0e-11 76.6 156 34.6
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.0e-11 76.6 156 34.6
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.0e-11 76.6 155 29.0
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 1.7e-11 75.9 83 47.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 3.0e-11 75.1 131 32.8
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 5.1e-11 74.3 135 34.8
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 5.1e-11 74.3 182 30.8
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.6e-11 73.6 114 36.8
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 5.6e-10 70.9 124 32.3
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 9.5e-10 70.1 175 27.4
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 1.2e-09 69.7 199 27.6
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 8.1e-09 67.0 120 38.3
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-08 66.2 163 25.8
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.8e-08 65.9 129 32.6
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 8.9e-08 63.5 83 37.3
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 1.7e-06 59.3 97 35.1


User provided reference genes

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