Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 0.0e+00 1083.9 540 100.0
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 1.6e-302 1042.0 540 95.7
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 8.1e-302 1039.6 540 95.2
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 1.5e-300 1035.4 540 94.4
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 7.6e-300 1033.1 540 94.3
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 2.9e-299 1031.2 540 94.4
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.1e-298 1029.2 540 93.9
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.1e-298 1029.2 540 93.9
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 1.4e-298 1028.9 540 94.3
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 9.3e-298 1026.2 540 93.7
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 3.5e-297 1024.2 540 93.5
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 1.9e-290 1001.9 540 91.5
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 1.3e-267 926.0 540 84.4
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 7.8e-244 847.0 540 75.9
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.0e-243 846.7 540 76.1
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.3e-243 846.3 538 75.8
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 2.3e-243 845.5 540 75.9
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 4.3e-242 841.3 540 74.6
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 9.5e-242 840.1 540 75.2
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 4.7e-241 837.8 540 74.8
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 4.7e-241 837.8 540 73.9
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 1.4e-240 836.3 540 74.3
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 3.4e-239 831.6 538 75.3
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 4.4e-239 831.2 540 74.1
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 4.4e-239 831.2 541 73.8
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 5.7e-239 830.9 540 73.3
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 1.3e-238 829.7 540 73.5
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 3.7e-238 828.2 540 73.1
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 8.3e-238 827.0 540 73.3
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 8.3e-238 827.0 538 73.4
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 1.1e-237 826.6 540 73.5
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 1.4e-237 826.2 540 73.1
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.2e-237 825.1 545 71.7
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 3.2e-237 825.1 538 73.2
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.0e-236 822.4 554 70.9
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 4.6e-236 821.2 540 73.0
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 1.3e-235 819.7 538 72.9
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 2.3e-235 818.9 540 73.0
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 3.0e-235 818.5 539 72.2
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 6.6e-235 817.4 540 73.7
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 6.6e-235 817.4 540 73.0
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.1e-234 816.6 540 71.3
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 3.3e-234 815.1 540 72.4
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 3.3e-234 815.1 538 73.0
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.3e-234 814.7 540 72.2
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 7.3e-234 813.9 540 72.2
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 3.6e-233 811.6 569 69.4
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 8.0e-233 810.4 539 71.6
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.0e-232 810.1 538 71.9
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 2.3e-232 808.9 540 71.5
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.1e-232 808.5 539 71.4
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 3.1e-232 808.5 540 72.2
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.5e-231 806.2 537 71.9
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.6e-231 805.4 540 70.7
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 5.8e-231 804.3 540 73.3
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 2.9e-230 802.0 619 64.6
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 4.9e-230 801.2 540 70.6
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 8.3e-230 800.4 539 71.6
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 1.9e-229 799.3 546 71.6
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 2.7e-228 795.4 539 71.2
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 3.5e-228 795.0 542 71.0
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.6e-228 794.7 564 69.7
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 1.1e-226 790.0 538 70.8
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 1.1e-224 783.5 540 68.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.2e-223 780.0 540 69.8
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 4.9e-222 774.6 537 69.1
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 2.4e-221 772.3 613 63.3
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 2.1e-217 759.2 538 68.0
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 6.8e-216 754.2 501 71.3
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 4.9e-214 748.0 554 66.6
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 3.2e-213 745.3 535 65.8
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 7.1e-213 744.2 539 67.2
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 7.1e-213 744.2 538 67.7
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 3.9e-211 738.4 479 74.7
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.5e-210 736.5 540 67.4
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.2e-209 733.4 539 64.7
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.4e-208 729.9 540 66.3
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 4.0e-208 728.4 508 69.7
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 2.5e-202 709.1 462 73.8
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 4.5e-199 698.4 540 63.7
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 4.5e-199 698.4 486 69.5
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 7.6e-199 697.6 509 67.8
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 3.2e-197 692.2 472 69.1
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 3.0e-195 685.6 450 73.6
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 1.6e-185 653.3 339 96.5
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 1.4e-184 650.2 540 57.8
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 2.4e-184 649.4 537 62.4
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 3.8e-182 642.1 566 58.0
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 1.9e-181 639.8 537 56.4
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.9e-179 632.1 539 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 4.8e-169 598.6 514 57.0
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 1.1e-160 570.9 406 68.5
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.4e-160 570.5 538 55.0
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.6e-146 523.1 319 77.4
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 9.1e-144 514.6 320 74.4
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 5.9e-143 511.9 335 74.0
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.8e-139 500.4 335 70.7
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 8.8e-139 498.0 309 74.8
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.6e-138 496.5 517 53.2
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 1.3e-134 484.2 447 55.9
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 3.0e-131 473.0 539 49.2
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.0e-130 470.3 570 42.6
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 1.6e-116 424.1 380 59.5
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 3.4e-114 416.4 289 69.9
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 2.4e-104 383.6 362 53.0
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.8e-100 370.2 628 36.1
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 1.9e-93 347.4 206 81.1
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.4e-83 314.7 233 67.0
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 5.4e-80 302.8 244 61.1
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.2e-58 231.9 140 75.0
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.0e-54 218.8 160 63.8
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 8.2e-44 182.6 158 57.6
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.9e-41 174.1 130 64.6
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 2.5e-40 171.0 130 60.0
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 6.5e-33 146.4 99 67.7
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.6e-31 140.6 158 48.7
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 2.2e-28 131.3 85 72.9
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 3.5e-26 124.0 100 52.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.2e-24 117.5 69 79.7
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 1.7e-20 105.1 64 71.9
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 2.7e-18 97.8 105 50.5
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 6.8e-14 83.2 96 40.6
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.4e-11 75.5 42 83.3
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 3.2e-11 74.3 53 67.9
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 1.0e-06 59.3 61 52.5
A05p12960 Brassica napus HOM05D002380 ORTHO05D033720 5.2e-06 57.0 43 72.1
BraA05t20236Z Brassica rapa HOM05D002380 ORTHO05D033720 5.2e-06 57.0 43 72.1
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 5.2e-06 57.0 34 76.5
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 8.9e-06 56.2 77 45.5


User provided reference genes

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