Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G24570 Arabidopsis lyrata HOM05D000106 ORTHO05D019706 1.3e-148 529.6 265 100.0
AL4G23170 Arabidopsis lyrata HOM05D000106 ORTHO05D019706 4.8e-21 105.9 60 83.3
AL228U10020 Arabidopsis lyrata HOM05D000106 ORTHO05D019706 3.4e-19 99.8 60 81.7
Carub.0007s1141 Capsella rubella HOM05D000106 ORTHO05D000160 5.0e-18 95.9 66 75.8
BcaNung00455 Brassica carinata HOM05D000106 ORTHO05D000160 6.5e-18 95.5 80 63.8
AT4G29180 Arabidopsis thaliana HOM05D000106 ORTHO05D000160 8.5e-18 95.1 65 75.4
Sp7g27100 Schrenkiella parvula HOM05D000106 ORTHO05D000160 1.4e-17 94.4 66 74.2
CARHR236910 Cardamine hirsuta HOM05D000106 ORTHO05D000160 7.2e-17 92.0 66 72.7
AL7G22940 Arabidopsis lyrata HOM05D000106 ORTHO05D000160 2.1e-16 90.5 65 69.2
AT4G29450 Arabidopsis thaliana HOM05D000106 ORTHO05D000160 2.1e-16 90.5 72 68.1
Thhalv10026923m.g Eutrema salsugineum HOM05D000106 ORTHO05D000160 2.7e-16 90.1 65 72.3
C07p56710 Brassica napus HOM05D000106 ORTHO05D000160 7.9e-16 88.6 65 69.2
BolC7t46153H Brassica oleracea HOM05D000106 ORTHO05D000160 7.9e-16 88.6 65 69.2
Aa31LG2G21490 Aethionema arabicum HOM05D000106 ORTHO05D000160 1.0e-15 88.2 65 70.8
A03p58770 Brassica napus HOM05D000106 ORTHO05D000160 1.4e-15 87.8 65 67.7
BraA03t14940Z Brassica rapa HOM05D000106 ORTHO05D000160 1.4e-15 87.8 65 67.7
Thhalv10024372m.g Eutrema salsugineum HOM05D000106 ORTHO05D000160 3.0e-15 86.7 64 70.3
C01p10040 Brassica napus HOM05D000106 ORTHO05D000160 6.7e-15 85.5 66 65.2
BcaC09g51732 Brassica carinata HOM05D000106 ORTHO05D000160 4.3e-14 82.8 66 63.6
BolC1t00962H Brassica oleracea HOM05D000106 ORTHO05D000160 4.3e-14 82.8 66 63.6
A01p08580 Brassica napus HOM05D000106 ORTHO05D000160 5.7e-14 82.4 65 63.1
BcaC09g51731 Brassica carinata HOM05D000106 ORTHO05D000160 1.3e-13 81.3 66 60.6
CARHR237270 Cardamine hirsuta HOM05D000106 ORTHO05D000160 1.7e-13 80.9 65 63.1
BraA01t00808Z Brassica rapa HOM05D000106 ORTHO05D000160 2.2e-13 80.5 65 60.0
Carub.0007s1109 Capsella rubella HOM05D000106 ORTHO05D000160 3.7e-13 79.7 64 67.2
BraA08t33925Z Brassica rapa HOM05D000106 ORTHO05D019706 2.4e-12 77.0 63 61.9
AL3G36360 Arabidopsis lyrata HOM05D000646 ORTHO05D000607 5.3e-12 75.9 39 94.9
AT1G07890 Arabidopsis thaliana HOM05D000646 ORTHO05D000607 2.9e-10 70.1 33 97.0
AL1G18170 Arabidopsis lyrata HOM05D000646 ORTHO05D000607 5.0e-10 69.3 33 93.9
Carub.0001s0723 Capsella rubella HOM05D000646 ORTHO05D000607 1.4e-09 67.8 33 93.9
Sp1g06570 Schrenkiella parvula HOM05D000646 ORTHO05D000607 1.4e-09 67.8 33 93.9
BcaC07g41970 Brassica carinata HOM05D000646 ORTHO05D000607 4.2e-09 66.2 33 90.9
BcaC07g42502 Brassica carinata HOM05D000646 ORTHO05D000607 4.2e-09 66.2 33 90.9
A09p66130 Brassica napus HOM05D000646 ORTHO05D000607 4.2e-09 66.2 33 90.9
C08p50290 Brassica napus HOM05D000646 ORTHO05D000607 4.2e-09 66.2 33 90.9
BolC8t52558H Brassica oleracea HOM05D000646 ORTHO05D000607 4.2e-09 66.2 33 90.9
Thhalv10008402m.g Eutrema salsugineum HOM05D000646 ORTHO05D000607 5.5e-09 65.9 33 87.9
BcaB05g24150 Brassica carinata HOM05D000646 ORTHO05D000607 9.4e-09 65.1 33 87.9
BraA09t41951Z Brassica rapa HOM05D000646 ORTHO05D000607 9.4e-09 65.1 33 87.9
Aa31sc175G10 Aethionema arabicum HOM05D000646 ORTHO05D000607 1.6e-08 64.3 33 87.9
THA.LOC104814577 Tarenaya hassleriana HOM05D000106 ORTHO05D000160 3.6e-08 63.2 64 53.1
CARHR007700 Cardamine hirsuta HOM05D000646 ORTHO05D000607 6.1e-08 62.4 33 81.8
TWI32G0378 Tripterygium wilfordii HOM05D000106 ORTHO05D000160 1.4e-07 61.2 82 43.9
BcaB02g06703 Brassica carinata HOM05D000646 ORTHO05D000607 1.8e-07 60.8 33 81.8
BcaC05g24703 Brassica carinata HOM05D000646 ORTHO05D000607 1.8e-07 60.8 33 81.8
BcaC05g24706 Brassica carinata HOM05D000646 ORTHO05D000607 1.8e-07 60.8 33 81.8
A06p05000 Brassica napus HOM05D000646 ORTHO05D000607 1.8e-07 60.8 33 81.8
C05p05940 Brassica napus HOM05D000646 ORTHO05D000607 1.8e-07 60.8 33 81.8
BolC5t29356H Brassica oleracea HOM05D000646 ORTHO05D000607 1.8e-07 60.8 33 81.8
BraA06t23706Z Brassica rapa HOM05D000646 ORTHO05D000607 1.8e-07 60.8 33 81.8
THA.LOC104815756 Tarenaya hassleriana HOM05D000646 ORTHO05D000607 3.0e-07 60.1 32 84.4
HanXRQChr03g0060881 Helianthus annuus HOM05D000106 ORTHO05D000160 5.1e-07 59.3 70 45.7
Prupe.3G055900 Prunus persica HOM05D000106 ORTHO05D000160 5.1e-07 59.3 62 51.6
MD09G1199100 Malus domestica HOM05D000106 ORTHO05D000160 6.7e-07 58.9 100 36.0
THA.LOC104800618 Tarenaya hassleriana HOM05D000646 ORTHO05D000607 8.8e-07 58.5 33 81.8
Migut.D02170 Erythranthe guttata HOM05D000646 ORTHO05D000607 1.1e-06 58.2 31 80.6
Gorai.010G080000 Gossypium raimondii HOM05D000106 ORTHO05D000160 1.1e-06 58.2 71 43.7
Migut.N02635 Erythranthe guttata HOM05D000646 ORTHO05D000607 1.5e-06 57.8 31 87.1
FvH4_6g32691 Fragaria vesca HOM05D000106 ORTHO05D000160 1.5e-06 57.8 65 46.2
Lsat_1_v5_gn_7_38701 Lactuca sativa HOM05D000106 ORTHO05D000160 1.5e-06 57.8 65 49.2
MD02G1071800 Malus domestica HOM05D000106 ORTHO05D000160 2.0e-06 57.4 63 47.6
PGR142G2895 Punica granatum HOM05D000106 ORTHO05D000160 2.0e-06 57.4 64 48.4
RcHm_v2.0_Chr2g0141481 Rosa chinensis HOM05D000106 ORTHO05D000160 2.0e-06 57.4 65 46.2
Sc21g0000140 Simmondsia chinensis HOM05D000646 ORTHO05D000607 2.0e-06 57.4 32 81.2
Nn8g40623 Nelumbo nucifera HOM05D000106 ORTHO05D000160 2.6e-06 57.0 101 36.6
Prupe.3G056100 Prunus persica HOM05D000106 ORTHO05D000160 2.6e-06 57.0 67 46.3
Hma1.2p1_0663F.1_g198590 Hydrangea macrophylla HOM05D000106 ORTHO05D000160 3.3e-06 56.6 75 46.7
THA.LOC104826354 Tarenaya hassleriana HOM05D000646 ORTHO05D000607 3.3e-06 56.6 31 83.9
BcaB03g13361 Brassica carinata HOM05D000646 ORTHO05D000607 4.4e-06 56.2 51 52.9
A08p35410 Brassica napus HOM05D000646 ORTHO05D000607 4.4e-06 56.2 51 52.9
C08p03430 Brassica napus HOM05D000646 ORTHO05D000607 4.4e-06 56.2 51 52.9
BraA08t35447Z Brassica rapa HOM05D000646 ORTHO05D000607 4.4e-06 56.2 51 52.9
Duzib168G2360 Durio zibethinus HOM05D000106 ORTHO05D000160 4.4e-06 56.2 64 46.9
FAN23G0256 Fragaria x ananassa HOM05D000106 ORTHO05D000160 4.4e-06 56.2 63 44.4
Gohir.A06G069800 Gossypium hirsutum HOM05D000106 ORTHO05D000160 4.4e-06 56.2 71 43.7
Psat4g196680 Pisum sativum HOM05D000106 ORTHO05D000160 4.4e-06 56.2 79 41.8
Thecc.09G095700 Theobroma cacao HOM05D000106 ORTHO05D000160 4.4e-06 56.2 73 43.8
Eucgr.C00943 Eucalyptus grandis HOM05D000106 ORTHO05D000160 5.7e-06 55.8 72 45.8
Phvul.005G164700 Phaseolus vulgaris HOM05D000106 ORTHO05D000160 5.7e-06 55.8 81 43.2
COL.COLO4_18263 Corchorus olitorius HOM05D000106 ORTHO05D000160 7.4e-06 55.5 64 46.9
ECA240G3674 Erigeron canadensis HOM05D000106 ORTHO05D000160 7.4e-06 55.5 64 48.4
Gohir.D06G068466 Gossypium hirsutum HOM05D000106 ORTHO05D000160 7.4e-06 55.5 71 42.3
MD02G1071600 Malus domestica HOM05D000106 ORTHO05D000160 7.4e-06 55.5 63 47.6
Phvul.005G162400 Phaseolus vulgaris HOM05D000106 ORTHO05D000160 7.4e-06 55.5 70 48.6
Solyc06g005150.3 Solanum lycopersicum HOM05D000646 ORTHO05D000607 7.4e-06 55.5 31 80.6
Sopen06g001140 Solanum pennellii HOM05D000646 ORTHO05D000607 7.4e-06 55.5 31 80.6
PGSC0003DMG400030056 Solanum tuberosum HOM05D000646 ORTHO05D000607 7.4e-06 55.5 31 80.6
PGSC0003DMG400030063 Solanum tuberosum HOM05D000646 ORTHO05D000607 7.4e-06 55.5 31 80.6
CAN.G200.9 Capsicum annuum HOM05D000646 ORTHO05D000607 9.7e-06 55.1 31 80.6
AUR62022254 Chenopodium quinoa HOM05D000106 ORTHO05D000160 9.7e-06 55.1 71 46.5
Phvul.005G162500 Phaseolus vulgaris HOM05D000106 ORTHO05D000160 9.7e-06 55.1 69 49.3
Prupe.3G055800 Prunus persica HOM05D000106 ORTHO05D000160 9.7e-06 55.1 66 50.0
Prupe.7G215900 Prunus persica HOM05D000106 ORTHO05D000160 9.7e-06 55.1 63 42.9
Hund01392 Selenicereus undatus HOM05D000646 ORTHO05D000607 9.7e-06 55.1 32 75.0
TPR.G40340 Trifolium pratense HOM05D000106 ORTHO05D011406 9.7e-06 55.1 73 42.5


User provided reference genes

Program Settings