Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G20910 Arabidopsis lyrata HOM05D010067 ORTHO05D012286 3.7e-153 545.0 319 100.0
Thhalv10015516m.g Eutrema salsugineum HOM05D010067 ORTHO05D012286 5.3e-59 232.3 309 52.1
AL5G21590 Arabidopsis lyrata HOM05D010067 ORTHO05D012286 9.1e-59 231.5 322 47.5
AL5G21870 Arabidopsis lyrata HOM05D010067 ORTHO05D012286 4.5e-58 229.2 327 45.6
AT5G27130 Arabidopsis thaliana HOM05D010067 ORTHO05D012286 1.5e-53 214.2 315 45.4
Carub.0006s2537 Capsella rubella HOM05D010067 ORTHO05D012286 8.3e-52 208.4 170 63.5
AT1G48150 Arabidopsis thaliana HOM05D010067 ORTHO05D012286 1.0e-49 201.4 324 51.2
A02p38510 Brassica napus HOM05D010067 ORTHO05D012286 8.5e-49 198.4 310 43.2
BraA02t08829Z Brassica rapa HOM05D010067 ORTHO05D012286 7.2e-48 195.3 312 43.3
Carub.0005s0962 Capsella rubella HOM05D010067 ORTHO05D012286 3.6e-47 193.0 149 67.8
C02p57880 Brassica napus HOM05D010067 ORTHO05D012286 8.0e-47 191.8 314 42.7
BcaC03g17772 Brassica carinata HOM05D010067 ORTHO05D012286 2.3e-46 190.3 314 42.4
BolC2t11856H Brassica oleracea HOM05D010067 ORTHO05D012286 3.0e-46 189.9 314 42.0
AT1G50780 Arabidopsis thaliana HOM05D010067 ORTHO05D012286 1.3e-33 147.9 306 39.9
Aa31LG3G18740 Aethionema arabicum HOM05D010067 ORTHO05D012286 5.2e-22 109.4 160 43.8
Aa31LG3G4360 Aethionema arabicum HOM05D010067 ORTHO05D012286 6.8e-22 109.0 155 41.9
Aa31LG4G13760 Aethionema arabicum HOM05D010067 ORTHO05D012286 3.4e-21 106.7 135 44.4
Aa31LG4G13670 Aethionema arabicum HOM05D010067 ORTHO05D012286 7.5e-21 105.5 128 45.3
Aa31sc24G40 Aethionema arabicum HOM05D010067 ORTHO05D012286 2.9e-20 103.6 150 42.7
Aa31LG3G4380 Aethionema arabicum HOM05D010067 ORTHO05D012286 6.4e-20 102.4 153 42.5
Aa31LG3G620 Aethionema arabicum HOM05D010067 ORTHO05D012286 2.8e-15 87.0 152 39.5
THA.LOC104810605 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 1.2e-13 81.6 141 35.5
THA.LOC104810603 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 2.6e-13 80.5 141 34.8
THA.LOC104810604 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 2.6e-13 80.5 141 34.8
AT5G49420 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 7.6e-13 79.0 141 35.5
Carub.0002s1331 Capsella rubella HOM05D006070 ORTHO05D009119 9.9e-13 78.6 131 36.6
THA.LOC104823173 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 9.9e-13 78.6 136 38.2
CARHR059500 Cardamine hirsuta HOM05D006070 ORTHO05D009119 1.3e-12 78.2 162 34.0
Thhalv10023175m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 8.4e-12 75.5 138 37.7
AT5G38620 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 1.4e-11 74.7 124 37.9
A09p17140 Brassica napus HOM05D006070 ORTHO05D009119 1.9e-11 74.3 132 37.9
BraA09t37345Z Brassica rapa HOM05D006070 ORTHO05D009119 1.9e-11 74.3 132 37.9
Carub.0002s1330 Capsella rubella HOM05D006070 ORTHO05D009119 1.9e-11 74.3 162 29.6
CARHR058390 Cardamine hirsuta HOM05D006070 ORTHO05D009119 1.9e-11 74.3 167 32.9
A08p03790 Brassica napus HOM05D006070 ORTHO05D009119 2.4e-11 73.9 175 30.9
BcaB07g31239 Brassica carinata HOM05D006070 ORTHO05D009119 4.1e-11 73.2 132 37.1
C09p72150 Brassica napus HOM05D006070 ORTHO05D020096 5.4e-11 72.8 120 36.7
BolC9t59959H Brassica oleracea HOM05D006070 ORTHO05D020096 5.4e-11 72.8 120 36.7
A10p31460 Brassica napus HOM05D006070 ORTHO05D020096 7.1e-11 72.4 120 36.7
BraA10t45192Z Brassica rapa HOM05D006070 ORTHO05D020096 7.1e-11 72.4 120 36.7
THA.LOC104820129 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 7.1e-11 72.4 117 41.0
THA.LOC104820177 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 7.1e-11 72.4 164 32.3
BcaC04g22285 Brassica carinata HOM05D006070 ORTHO05D009119 9.2e-11 72.0 132 37.9
C09p21210 Brassica napus HOM05D006070 ORTHO05D009119 9.2e-11 72.0 132 37.9
BcaC06g32177 Brassica carinata HOM05D006070 ORTHO05D020096 1.2e-10 71.6 120 35.8
C08p03750 Brassica napus HOM05D006070 ORTHO05D009119 2.1e-10 70.9 158 31.6
C08p03960 Brassica napus HOM05D006070 ORTHO05D009119 2.1e-10 70.9 158 31.6
A08p03550 Brassica napus HOM05D006070 ORTHO05D009119 2.7e-10 70.5 179 31.3
Cpa.g.sc103.82 Carica papaya HOM05D006070 ORTHO05D009119 2.7e-10 70.5 167 30.5
BolC8t47189H Brassica oleracea HOM05D006070 ORTHO05D009119 3.5e-10 70.1 162 31.5
CARHR221010 Cardamine hirsuta HOM05D006070 ORTHO05D009119 3.5e-10 70.1 144 29.9
CARHR283580 Cardamine hirsuta HOM05D006070 ORTHO05D009119 3.5e-10 70.1 106 40.6
Sp5g22450 Schrenkiella parvula HOM05D006070 ORTHO05D020096 3.5e-10 70.1 120 35.0
THA.LOC104819459 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 3.5e-10 70.1 130 31.5
BcaC07g37029 Brassica carinata HOM05D006070 ORTHO05D009119 6.0e-10 69.3 162 31.5
Aa31LG3G4370 Aethionema arabicum HOM05D010067 ORTHO05D012286 7.8e-10 68.9 109 36.7
AT5G49490 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 1.0e-09 68.6 143 33.6
Thhalv10015623m.g Eutrema salsugineum HOM05D006070 ORTHO05D020096 1.3e-09 68.2 136 32.4
BraA08t32389Z Brassica rapa HOM05D006070 ORTHO05D009119 1.7e-09 67.8 179 30.7
BcaB04g17293 Brassica carinata HOM05D006070 ORTHO05D009119 2.3e-09 67.4 118 33.9
BolC9t55023H Brassica oleracea HOM05D006070 ORTHO05D009119 3.0e-09 67.0 132 37.1
BraA08t32408Z Brassica rapa HOM05D006070 ORTHO05D009119 3.0e-09 67.0 120 35.8
Cpa.g.sc43.109 Carica papaya HOM05D006070 ORTHO05D009119 3.9e-09 66.6 150 30.0
AT1G46408 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 5.1e-09 66.2 145 30.3
Carub.0007s2769 Capsella rubella HOM05D006070 ORTHO05D009119 5.1e-09 66.2 126 30.2
BolC7t44495H Brassica oleracea HOM05D006070 ORTHO05D009119 6.6e-09 65.9 169 29.6
Sp6g07320 Schrenkiella parvula HOM05D006070 ORTHO05D009119 6.6e-09 65.9 154 32.5
BcaB04g17320 Brassica carinata HOM05D006070 ORTHO05D009119 8.6e-09 65.5 118 33.9
Cpa.g.sc1046.4 Carica papaya HOM05D006070 ORTHO05D009119 8.6e-09 65.5 79 45.6
BcaB04g17295 Brassica carinata HOM05D006070 ORTHO05D009119 1.1e-08 65.1 118 33.1
BcaC08g43039 Brassica carinata HOM05D006070 ORTHO05D009119 1.1e-08 65.1 163 31.3
BcaC08g43048 Brassica carinata HOM05D006070 ORTHO05D009119 1.1e-08 65.1 163 31.3
CARHR116680 Cardamine hirsuta HOM05D006070 ORTHO05D009119 1.5e-08 64.7 188 32.4
BcaB04g17318 Brassica carinata HOM05D006070 ORTHO05D009119 1.9e-08 64.3 118 33.1
Sp2g03770 Schrenkiella parvula HOM05D006070 ORTHO05D009119 1.9e-08 64.3 133 36.1
AT5G04640 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 2.5e-08 63.9 104 34.6
Thhalv10029256m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 2.5e-08 63.9 140 30.0
Sp2g03710 Schrenkiella parvula HOM05D006070 ORTHO05D009119 2.5e-08 63.9 133 36.1
C06p02990 Brassica napus HOM05D006070 ORTHO05D009119 5.6e-08 62.8 162 29.6
BolC6t35422H Brassica oleracea HOM05D006070 ORTHO05D009119 5.6e-08 62.8 162 29.6
BraA06t23652Z Brassica rapa HOM05D006070 ORTHO05D009119 5.6e-08 62.8 155 31.6
Sp6g06330 Schrenkiella parvula HOM05D006070 ORTHO05D009119 5.6e-08 62.8 129 35.7
BcaNung06358 Brassica carinata HOM05D006070 ORTHO05D009119 7.3e-08 62.4 170 31.2
BolC6t35592H Brassica oleracea HOM05D006070 ORTHO05D009119 7.3e-08 62.4 170 31.2
Potri.006G258500 Populus trichocarpa HOM05D000203 ORTHO05D000135 7.3e-08 62.4 75 50.7
C06p04630 Brassica napus HOM05D006070 ORTHO05D009119 9.6e-08 62.0 170 31.2
AL6G40380 Arabidopsis lyrata HOM05D010067 ORTHO05D080180 1.6e-07 61.2 73 49.3
BcaB07g33746 Brassica carinata HOM05D006070 ORTHO05D009119 1.6e-07 61.2 168 29.2
BcaB07g33759 Brassica carinata HOM05D006070 ORTHO05D009119 1.6e-07 61.2 176 28.4
BolC8t47175H Brassica oleracea HOM05D006070 ORTHO05D009119 2.8e-07 60.5 88 39.8
C06p03100 Brassica napus HOM05D006070 ORTHO05D009119 3.6e-07 60.1 164 29.3
BolC6t35429H Brassica oleracea HOM05D006070 ORTHO05D009119 3.6e-07 60.1 164 29.3
Potri.006G258550 Populus trichocarpa HOM05D000203 ORTHO05D000135 3.6e-07 60.1 75 48.0
Aqoxy3G04248 Aquilegia oxysepala HOM05D000203 ORTHO05D000135 4.7e-07 59.7 79 41.8
BcaB07g33520 Brassica carinata HOM05D006070 ORTHO05D009119 4.7e-07 59.7 144 30.6
BcaNung02584 Brassica carinata HOM05D006070 ORTHO05D009119 4.7e-07 59.7 180 28.3
C07p39720 Brassica napus HOM05D006070 ORTHO05D009119 4.7e-07 59.7 180 28.3
Potri.017G124000 Populus trichocarpa HOM05D000203 ORTHO05D000135 4.7e-07 59.7 75 48.0
A06p04480 Brassica napus HOM05D006070 ORTHO05D009119 6.2e-07 59.3 156 30.8
Thhalv10029235m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 6.2e-07 59.3 128 32.8
PSO210G5697 Papaver somniferum HOM05D000203 ORTHO05D000135 6.2e-07 59.3 127 33.1
BcaB04g17059 Brassica carinata HOM05D006070 ORTHO05D009119 8.1e-07 58.9 161 28.6
Cc09_g08870 Coffea canephora HOM05D000203 ORTHO05D000135 1.4e-06 58.2 110 39.1
Dinv05644 Davidia involucrata HOM05D000203 ORTHO05D000135 1.8e-06 57.8 147 29.9
PSO339G4623 Papaver somniferum HOM05D000203 ORTHO05D012050 1.8e-06 57.8 151 32.5
Potri.012G110100 Populus trichocarpa HOM05D000203 ORTHO05D000135 1.8e-06 57.8 71 49.3
Ciclev10018138m.g Citrus clementina HOM05D000203 ORTHO05D000135 3.1e-06 57.0 175 31.4
Thhalv10029380m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 3.1e-06 57.0 146 31.5
THA.LOC104820133 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 3.1e-06 57.0 101 38.6
PSO384G4243 Papaver somniferum HOM05D000203 ORTHO05D012050 8.9e-06 55.5 131 32.8


User provided reference genes

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