Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G19150 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 4.0e-104 381.3 181 100.0
AL9U11090 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 1.4e-96 356.3 169 99.4
AL5G13790 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 4.1e-88 328.2 181 85.1
A04p22450 Brassica napus HOM05D000075 ORTHO05D014840 6.8e-19 98.2 161 39.1
BolC2t06135H Brassica oleracea HOM05D007309 ORTHO05D010099 8.9e-19 97.8 175 36.0
BcaC03g12956 Brassica carinata HOM05D007309 ORTHO05D010099 1.5e-18 97.1 175 36.0
C02p01790 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-18 97.1 175 36.0
BcaC02g08085 Brassica carinata HOM05D000075 ORTHO05D014840 5.8e-18 95.1 151 38.4
Thhalv10014870m.g Eutrema salsugineum HOM05D007309 ORTHO05D014840 4.9e-17 92.0 154 39.0
BcaB05g21746 Brassica carinata HOM05D007309 ORTHO05D010099 5.4e-16 88.6 179 39.1
C07p13270 Brassica napus HOM05D023794 ORTHO05D028264 5.4e-16 88.6 174 34.5
BolC2t06133H Brassica oleracea HOM05D007309 ORTHO05D021684 5.4e-16 88.6 176 36.9
C02p01800 Brassica napus HOM05D007309 ORTHO05D010099 9.2e-16 87.8 173 32.9
BcaB05g21792 Brassica carinata HOM05D007309 ORTHO05D010099 1.6e-15 87.0 174 34.5
BcaC03g13124 Brassica carinata HOM05D007309 ORTHO05D021684 1.6e-15 87.0 176 37.5
BcaC03g12964 Brassica carinata HOM05D007309 ORTHO05D010099 2.1e-15 86.7 176 37.5
C02p01710 Brassica napus HOM05D007309 ORTHO05D010099 2.1e-15 86.7 176 37.5
BcaC03g13128 Brassica carinata HOM05D007309 ORTHO05D021684 2.7e-15 86.3 179 36.9
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 3.5e-15 85.9 174 36.8
C02p01480 Brassica napus HOM05D007309 ORTHO05D010099 3.5e-15 85.9 188 35.1
C02p02060 Brassica napus HOM05D007309 ORTHO05D021684 3.5e-15 85.9 179 36.9
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 3.5e-15 85.9 174 36.8
BolC2t06164H Brassica oleracea HOM05D007309 ORTHO05D021684 4.6e-15 85.5 176 37.5
BraA02t04799Z Brassica rapa HOM05D007309 ORTHO05D010099 7.8e-15 84.7 177 35.6
BcaB05g21775 Brassica carinata HOM05D007309 ORTHO05D010099 2.3e-14 83.2 175 33.1
A01p09730 Brassica napus HOM05D007309 ORTHO05D010099 2.3e-14 83.2 133 40.6
C02p01340 Brassica napus HOM05D007309 ORTHO05D010099 2.3e-14 83.2 186 34.4
BcaC03g12986 Brassica carinata HOM05D007309 ORTHO05D010099 3.0e-14 82.8 186 34.4
BcaC09g51621 Brassica carinata HOM05D007309 ORTHO05D010099 3.0e-14 82.8 137 38.0
C02p01380 Brassica napus HOM05D007309 ORTHO05D010099 3.0e-14 82.8 186 34.4
BraA02t04794Z Brassica rapa HOM05D007309 ORTHO05D010099 3.9e-14 82.4 172 35.5
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 6.6e-14 81.6 162 37.0
BcaC03g12963 Brassica carinata HOM05D007309 ORTHO05D010099 8.6e-14 81.3 174 33.9
C02p01720 Brassica napus HOM05D007309 ORTHO05D010099 8.6e-14 81.3 174 33.9
BolC2t06167H Brassica oleracea HOM05D007309 ORTHO05D021684 8.6e-14 81.3 166 37.3
BraA01t00916Z Brassica rapa HOM05D007309 ORTHO05D010099 8.6e-14 81.3 137 38.0
BraA01t00993Z Brassica rapa HOM05D007309 ORTHO05D010099 8.6e-14 81.3 137 38.0
BcaB05g21785 Brassica carinata HOM05D007309 ORTHO05D010099 1.1e-13 80.9 176 35.2
AL4G33400 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.9e-13 80.1 165 37.6
BcaC03g12957 Brassica carinata HOM05D007309 ORTHO05D010099 1.9e-13 80.1 171 35.1
A05p24100 Brassica napus HOM05D000075 ORTHO05D014840 1.9e-13 80.1 165 39.4
C02p01780 Brassica napus HOM05D007309 ORTHO05D010099 1.9e-13 80.1 171 35.1
C02p01240 Brassica napus HOM05D007309 ORTHO05D010099 2.5e-13 79.7 172 34.3
C02p01750 Brassica napus HOM05D007309 ORTHO05D010099 2.5e-13 79.7 191 31.9
BcaC03g12970 Brassica carinata HOM05D007309 ORTHO05D010099 4.3e-13 79.0 173 32.9
C02p01630 Brassica napus HOM05D007309 ORTHO05D010099 4.3e-13 79.0 173 33.5
C02p01680 Brassica napus HOM05D007309 ORTHO05D014840 4.3e-13 79.0 157 35.0
BolC2t06110H Brassica oleracea HOM05D007309 ORTHO05D010099 5.6e-13 78.6 172 34.3
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 7.3e-13 78.2 164 33.5
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 7.3e-13 78.2 164 33.5
BcaB06g28307 Brassica carinata HOM05D000075 ORTHO05D014840 9.6e-13 77.8 136 36.0
BcaC05g26633 Brassica carinata HOM05D007309 ORTHO05D010099 1.2e-12 77.4 175 33.7
BraA05t21290Z Brassica rapa HOM05D000075 ORTHO05D014840 2.1e-12 76.6 165 38.8
C04p58590 Brassica napus HOM05D000075 ORTHO05D014840 1.1e-11 74.3 76 48.7
BcaC03g12960 Brassica carinata HOM05D007309 ORTHO05D010099 1.8e-11 73.6 177 31.1
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 3.1e-11 72.8 173 31.8
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 3.1e-11 72.8 173 31.8
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 4.0e-11 72.4 144 35.4
BcaB05g21772 Brassica carinata HOM05D007309 ORTHO05D010099 6.8e-11 71.6 179 33.0
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 8.9e-11 71.2 178 33.1
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 2.0e-10 70.1 129 38.0
Sabra13G0002500 Salix brachista HOM05D001456 ORTHO05D002799 2.6e-10 69.7 174 31.0
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 4.4e-10 68.9 168 28.6
BolC4t27377H Brassica oleracea HOM05D000075 ORTHO05D014840 5.8e-10 68.6 63 52.4
C02p01450 Brassica napus HOM05D007309 ORTHO05D010099 1.7e-09 67.0 134 34.3
BolC7t41820H Brassica oleracea HOM05D023794 ORTHO05D028264 1.7e-09 67.0 146 34.2
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 1.7e-09 67.0 170 30.6
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 2.2e-09 66.6 172 29.7
PGR031G2409 Punica granatum HOM05D001456 ORTHO05D002799 2.2e-09 66.6 172 29.7
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 2.2e-09 66.6 172 29.7
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 2.9e-09 66.2 164 29.3
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 2.9e-09 66.2 175 29.7
Nitab4.5_0003841g0010 Nicotiana tabacum HOM05D001456 ORTHO05D002799 2.9e-09 66.2 162 29.6
PGR031G3055 Punica granatum HOM05D001456 ORTHO05D002799 3.8e-09 65.9 164 29.3
Eucgr.H01318 Eucalyptus grandis HOM05D001456 ORTHO05D002799 4.9e-09 65.5 175 28.0
AT3G60940 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 6.4e-09 65.1 167 29.3
BolC2t06144H Brassica oleracea HOM05D007309 ORTHO05D027345 6.4e-09 65.1 80 46.2
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 8.4e-09 64.7 164 27.4
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 8.4e-09 64.7 160 31.2
Sabra13G0002600 Salix brachista HOM05D001456 ORTHO05D002799 8.4e-09 64.7 157 33.1
DCAR_018246 Daucus carota HOM05D001456 ORTHO05D002799 1.1e-08 64.3 165 29.1
DCAR_018247 Daucus carota HOM05D000103 ORTHO05D002799 1.1e-08 64.3 165 29.1
Lalb_Chr04g0260301 Lupinus albus HOM05D001456 ORTHO05D002799 1.4e-08 63.9 168 29.2
Potri.013G003200 Populus trichocarpa HOM05D001456 ORTHO05D002799 1.4e-08 63.9 159 30.2
Potri.013G003301 Populus trichocarpa HOM05D001456 ORTHO05D002799 1.4e-08 63.9 158 27.8
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 1.4e-08 63.9 175 28.6
BcaC03g12961 Brassica carinata HOM05D007309 ORTHO05D010099 1.9e-08 63.5 185 29.7
Potri.013G003100 Populus trichocarpa HOM05D001456 ORTHO05D002799 1.9e-08 63.5 159 29.6
A09p07250 Brassica napus HOM05D001456 ORTHO05D002799 2.4e-08 63.2 166 28.3
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.4e-08 63.2 172 29.7
BcaC04g23460 Brassica carinata HOM05D001456 ORTHO05D002799 3.2e-08 62.8 166 28.3
C09p08100 Brassica napus HOM05D001456 ORTHO05D002799 3.2e-08 62.8 166 28.3
BolC9t53724H Brassica oleracea HOM05D001456 ORTHO05D002799 3.2e-08 62.8 166 28.3
Potri.013G003000 Populus trichocarpa HOM05D001456 ORTHO05D002799 3.2e-08 62.8 156 30.8
Sabra13G0002700 Salix brachista HOM05D001456 ORTHO05D002799 3.2e-08 62.8 159 28.9
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 4.2e-08 62.4 162 29.0
BcaC06g33211 Brassica carinata HOM05D001456 ORTHO05D002799 4.2e-08 62.4 159 27.7
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 4.2e-08 62.4 159 27.7
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 4.2e-08 62.4 159 27.7
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 4.2e-08 62.4 166 27.7
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 4.2e-08 62.4 169 29.0
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 5.4e-08 62.0 179 27.9
Hma1.2p1_3304F.1_g335090 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 5.4e-08 62.0 179 27.4
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 5.4e-08 62.0 162 28.4
Sopen02g033570 Solanum pennellii HOM05D001456 ORTHO05D002799 5.4e-08 62.0 165 27.9
Manes.01G233600 Manihot esculenta HOM05D001456 ORTHO05D002799 7.1e-08 61.6 173 28.9
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 9.3e-08 61.2 166 27.1
Cc02_g35790 Coffea canephora HOM05D001456 ORTHO05D002799 9.3e-08 61.2 162 29.0
TAR362G0556 Trochodendron aralioides HOM05D001456 ORTHO05D002799 9.3e-08 61.2 154 29.9
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 1.2e-07 60.8 159 34.6
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 1.2e-07 60.8 157 31.2
CSS0023005 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 1.2e-07 60.8 157 29.3
CiPaw.08G083800 Carya illinoinensis HOM05D001456 ORTHO05D002799 1.2e-07 60.8 165 28.5
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 1.2e-07 60.8 167 28.7
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 1.2e-07 60.8 158 32.3
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 1.2e-07 60.8 158 32.3
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.2e-07 60.8 171 29.2
MD17G1283700 Malus domestica HOM05D001456 ORTHO05D002799 1.6e-07 60.5 166 28.3
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 1.6e-07 60.5 165 27.3
TWI59G0324 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 1.6e-07 60.5 162 28.4
GSVIVG01031320001 Vitis vinifera HOM05D001456 ORTHO05D002799 1.6e-07 60.5 159 29.6
Zm00001eb139430 Zea mays HOM05D004262 ORTHO05D004886 1.6e-07 60.5 127 28.3
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 2.1e-07 60.1 158 28.5
CANSAT25G0904 Cannabis sativa HOM05D001456 ORTHO05D002799 2.1e-07 60.1 157 29.9
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 2.1e-07 60.1 165 26.1
Hma1.2p1_0759F.1_g213950 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 2.1e-07 60.1 154 30.5
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 2.1e-07 60.1 156 28.8
Potri.005G003800 Populus trichocarpa HOM05D001456 ORTHO05D002799 2.1e-07 60.1 156 30.1
PGR142G0814 Punica granatum HOM05D001456 ORTHO05D002799 2.1e-07 60.1 160 30.6
Sabra05G0001000 Salix brachista HOM05D001456 ORTHO05D002799 2.1e-07 60.1 156 30.1
Sabra05G0015100 Salix brachista HOM05D001456 ORTHO05D002799 2.1e-07 60.1 156 30.1
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 2.7e-07 59.7 160 28.1
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 2.7e-07 59.7 160 28.1
BolC2t07109H Brassica oleracea HOM05D007309 ORTHO05D040036 2.7e-07 59.7 163 27.6
BraA01t00917Z Brassica rapa HOM05D007309 ORTHO05D027345 2.7e-07 59.7 53 52.8
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 2.7e-07 59.7 162 29.0
Atru.chr5.892 Acer truncatum HOM05D001456 ORTHO05D002799 3.5e-07 59.3 157 29.3
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 3.5e-07 59.3 172 27.9
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 3.5e-07 59.3 157 29.3
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 3.5e-07 59.3 166 26.5
RcHm_v2.0_Chr3g0486181 Rosa chinensis HOM05D001456 ORTHO05D002799 3.5e-07 59.3 160 29.4
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 3.5e-07 59.3 127 29.9
PGSC0003DMG400001456 Solanum tuberosum HOM05D001456 ORTHO05D002799 3.5e-07 59.3 128 30.5
TAR365G0439 Trochodendron aralioides HOM05D001456 ORTHO05D002799 3.5e-07 59.3 167 29.3
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 3.5e-07 59.3 157 29.9
Cfa004891 Carpinus fangiana HOM05D001456 ORTHO05D002799 4.6e-07 58.9 165 28.5
Haze_05129 Corylus avellana HOM05D001456 ORTHO05D002799 4.6e-07 58.9 165 28.5
MELO3C005198.2 Cucumis melo HOM05D001456 ORTHO05D002799 4.6e-07 58.9 162 27.8
Eucgr.K00579 Eucalyptus grandis HOM05D001456 ORTHO05D002799 4.6e-07 58.9 171 28.1
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 4.6e-07 58.9 168 27.4
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 4.6e-07 58.9 160 28.8
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 6.0e-07 58.5 159 27.7
BraA03t13802Z Brassica rapa HOM05D001456 ORTHO05D027445 6.0e-07 58.5 159 27.7
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 6.0e-07 58.5 162 27.2
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 6.0e-07 58.5 160 29.4
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 6.0e-07 58.5 167 27.5
Lj5C319T15 Lonicera japonica HOM05D001456 ORTHO05D002799 6.0e-07 58.5 161 28.6
MD09G1292400 Malus domestica HOM05D001456 ORTHO05D002799 6.0e-07 58.5 165 27.3
A08p32940 Brassica napus HOM05D001636 ORTHO05D009134 7.8e-07 58.2 171 28.1
BolC7t45010H Brassica oleracea HOM05D001456 ORTHO05D027445 7.8e-07 58.2 159 27.7
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 7.8e-07 58.2 175 28.0
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 7.8e-07 58.2 175 28.0
Peaxi162Scf00166g00428 Petunia axillaris HOM05D001456 ORTHO05D002799 7.8e-07 58.2 166 27.1
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 7.8e-07 58.2 158 29.1
AL4G34510 Arabidopsis lyrata HOM05D025464 ORTHO05D015909 1.0e-06 57.8 155 32.3
AL4G34550 Arabidopsis lyrata HOM05D025464 ORTHO05D015909 1.0e-06 57.8 155 32.3
Carub.0006s0826 Capsella rubella HOM05D004262 ORTHO05D004886 1.0e-06 57.8 135 27.4
Nn3g21913 Nelumbo nucifera HOM05D001456 ORTHO05D002799 1.0e-06 57.8 156 28.8
Sp2g24420 Schrenkiella parvula HOM05D001456 ORTHO05D002799 1.0e-06 57.8 146 28.1
Sopen02g033580 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 57.8 127 33.9
TWI23G1113 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 1.0e-06 57.8 157 28.7
TAR365G0880 Trochodendron aralioides HOM05D001456 ORTHO05D002799 1.0e-06 57.8 170 27.1
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 1.3e-06 57.4 173 26.6
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 1.3e-06 57.4 173 26.6
Cpa.g.sc519.4 Carica papaya HOM05D001456 ORTHO05D002799 1.3e-06 57.4 170 28.8
FAN19G2030 Fragaria x ananassa HOM05D001456 ORTHO05D002799 1.3e-06 57.4 160 28.8
FAN26G2486 Fragaria x ananassa HOM05D001456 ORTHO05D002799 1.3e-06 57.4 160 28.8
FAN28G1216 Fragaria x ananassa HOM05D001456 ORTHO05D002799 1.7e-06 57.0 157 29.3
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 1.7e-06 57.0 170 28.8
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 2.3e-06 56.6 159 27.0
C07p44860 Brassica napus HOM05D001456 ORTHO05D027445 2.3e-06 56.6 159 27.0
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 2.3e-06 56.6 166 28.9
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 2.3e-06 56.6 162 28.4
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 3.0e-06 56.2 160 30.0
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 3.0e-06 56.2 162 28.4
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 3.9e-06 55.8 160 30.6
A01p09740 Brassica napus HOM05D007309 ORTHO05D027345 5.1e-06 55.5 50 54.0
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 5.1e-06 55.5 160 30.0
Gohir.D11G108200 Gossypium hirsutum HOM05D001456 ORTHO05D002799 6.6e-06 55.1 157 29.3
Gorai.007G116200 Gossypium raimondii HOM05D001456 ORTHO05D002799 6.6e-06 55.1 157 29.3
Lsat_1_v5_gn_9_77400 Lactuca sativa HOM05D001456 ORTHO05D002799 6.6e-06 55.1 160 28.1
Solyc02g088860.2 Solanum lycopersicum HOM05D001456 ORTHO05D002799 6.6e-06 55.1 126 27.8


User provided reference genes

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