Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 8.0e-152 540.4 277 100.0
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.0e-143 513.5 276 94.9
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.6e-134 482.3 278 89.9
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.7e-104 381.7 296 75.0
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.2e-99 367.1 263 77.9
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.5e-94 350.1 245 79.2
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 2.7e-91 339.3 256 76.2
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 4.6e-91 338.6 244 76.6
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 7.8e-91 337.8 256 75.8
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 5.6e-89 331.6 244 76.6
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 5.6e-89 331.6 244 76.6
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 5.6e-89 331.6 244 76.6
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 6.4e-77 291.6 278 64.0
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.9e-66 255.8 275 56.7
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 3.3e-65 252.7 275 56.4
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.3e-64 250.8 283 55.1
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.1e-64 250.0 249 59.8
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.8e-64 249.6 275 56.0
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 2.4e-63 246.5 245 59.2
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.1e-63 246.1 253 57.7
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.1e-63 246.1 253 57.7
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 3.1e-63 246.1 251 61.0
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 9.0e-63 244.6 270 55.9
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.5e-62 243.8 291 53.6
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 2.6e-62 243.0 267 56.6
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 5.9e-62 241.9 231 63.2
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 7.6e-62 241.5 255 58.0
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 7.6e-62 241.5 249 58.6
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.0e-61 241.1 229 63.3
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.0e-61 241.1 256 58.6
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.7e-61 240.4 179 76.5
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 2.9e-61 239.6 250 56.0
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 2.9e-61 239.6 267 55.4
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.8e-61 239.2 250 57.6
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 8.5e-61 238.0 268 53.7
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.2e-60 236.1 256 57.0
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 4.2e-60 235.7 229 61.6
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 4.2e-60 235.7 227 62.6
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.5e-60 235.3 256 56.6
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 5.5e-60 235.3 246 56.9
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 7.2e-60 235.0 239 60.3
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 7.2e-60 235.0 229 61.6
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.1e-59 233.4 253 57.3
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 2.7e-59 233.0 256 57.8
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 4.6e-59 232.3 251 57.4
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 6.1e-59 231.9 261 54.8
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.8e-58 230.3 229 61.1
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 8.7e-58 228.0 222 59.9
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 8.7e-58 228.0 222 59.9
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 1.1e-57 227.6 267 53.6
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.1e-57 227.6 249 55.0
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.5e-57 227.3 246 55.3
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.9e-57 226.9 267 54.7
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 2.5e-57 226.5 251 55.4
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.5e-57 226.5 248 56.0
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 4.3e-57 225.7 222 59.0
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 9.7e-57 224.6 254 55.1
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 9.7e-57 224.6 252 56.0
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.3e-56 224.2 253 55.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.3e-56 224.2 227 58.1
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.6e-56 223.8 269 54.3
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.6e-56 223.8 254 55.1
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 8.2e-56 221.5 276 52.2
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 8.2e-56 221.5 229 57.6
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.1e-55 221.1 228 59.2
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.1e-55 221.1 227 57.7
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.8e-55 220.3 204 62.3
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.1e-55 219.5 268 53.7
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.9e-55 218.4 210 59.5
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 6.9e-55 218.4 254 55.1
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 9.0e-55 218.0 249 53.8
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.2e-54 217.6 266 53.8
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.5e-54 217.2 301 49.2
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.6e-54 216.5 251 54.6
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 5.9e-54 215.3 229 57.2
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 7.7e-54 214.9 254 54.7
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.3e-53 214.2 200 61.5
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.7e-53 213.8 244 53.3
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.8e-53 212.6 254 53.1
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 6.5e-53 211.8 258 53.1
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 2.5e-52 209.9 193 62.2
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 7.2e-52 208.4 262 53.4
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 4.6e-51 205.7 321 45.2
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.4e-50 204.1 203 57.6
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.5e-49 200.7 260 50.0
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 1.5e-49 200.7 220 57.3
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.5e-49 200.7 220 57.3
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 9.7e-49 198.0 225 54.7
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.2e-48 196.8 264 48.9
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 4.8e-48 195.7 230 55.2
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 1.1e-47 194.5 203 58.6
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.7e-45 187.2 252 50.0
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 2.9e-45 186.4 237 51.1
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 8.5e-45 184.9 253 49.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 8.5e-45 184.9 198 56.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 3.2e-44 183.0 249 49.8
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 1.2e-43 181.0 269 48.0
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.2e-43 181.0 198 57.1
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 1.0e-42 177.9 236 50.0
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 3.9e-42 176.0 232 48.3
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 5.2e-42 175.6 200 56.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.6e-41 173.3 200 55.5
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.8e-40 169.9 232 48.3
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 4.8e-40 169.1 218 49.1
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 1.1e-39 167.9 239 49.0
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.1e-39 166.4 199 54.8
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 4.1e-39 166.0 205 54.6
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 7.7e-38 161.8 183 53.0
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 1.0e-37 161.4 162 63.0
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.1e-36 157.9 219 51.1
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 5.5e-36 155.6 199 49.7
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 9.4e-36 154.8 409 34.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 9.4e-36 154.8 209 51.2
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.4e-34 151.0 179 55.9
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 9.7e-33 144.8 191 50.3
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 4.8e-32 142.5 216 44.0
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 4.5e-30 136.0 255 41.2
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.2e-26 122.5 187 46.5
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 5.4e-23 112.5 265 36.2
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 3.5e-22 109.8 243 38.7
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.2e-21 107.1 235 40.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.9e-20 104.0 138 51.4
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 5.5e-20 102.4 212 40.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 7.5e-17 92.0 135 46.7
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 3.7e-16 89.7 56 76.8
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.2e-14 84.7 153 41.8
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 2.7e-14 83.6 82 54.9
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 4.3e-12 76.3 53 83.0
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 2.1e-11 73.9 59 59.3
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.8e-11 73.6 150 41.3
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 4.0e-10 69.7 46 84.8
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.5e-09 67.8 70 51.4
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 2.6e-09 67.0 59 71.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 4.4e-09 66.2 36 86.1
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 4.4e-09 66.2 36 86.1
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.7e-08 64.3 36 86.1
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.9e-08 63.5 36 83.3
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.1e-07 61.6 37 83.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.1e-07 61.6 37 83.8
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.1e-07 61.6 37 83.8
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.1e-07 61.6 37 83.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.1e-07 61.6 37 83.8
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.8e-07 60.8 36 80.6
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 3.2e-07 60.1 36 80.6
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 4.1e-07 59.7 36 80.6
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.1e-07 59.7 36 80.6


User provided reference genes

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