Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G12820 Arabidopsis lyrata HOM05D001129 ORTHO05D080672 4.1e-162 574.7 296 100.0
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 3.4e-23 113.2 260 28.8
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 5.7e-23 112.5 250 30.8
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 7.5e-23 112.1 260 28.8
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 9.8e-23 111.7 245 31.0
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.2e-22 110.5 260 29.2
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 2.2e-22 110.5 260 29.2
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 2.8e-22 110.2 257 28.0
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 2.8e-22 110.2 260 28.8
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 4.8e-22 109.4 260 28.5
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 4.8e-22 109.4 260 28.5
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 8.3e-22 108.6 260 27.7
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 8.3e-22 108.6 260 28.1
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 8.3e-22 108.6 262 27.5
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 8.3e-22 108.6 262 27.5
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 8.3e-22 108.6 260 28.1
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 8.3e-22 108.6 262 27.5
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 8.3e-22 108.6 250 30.0
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 8.3e-22 108.6 252 31.0
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 1.1e-21 108.2 262 27.5
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.4e-21 107.8 257 27.6
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 1.4e-21 107.8 262 27.9
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 1.4e-21 107.8 262 27.9
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 1.4e-21 107.8 262 27.9
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-21 107.5 256 27.3
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 1.8e-21 107.5 250 30.8
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 2.4e-21 107.1 256 28.1
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 3.1e-21 106.7 257 27.6
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 3.1e-21 106.7 260 28.8
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 4.1e-21 106.3 252 30.6
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 7.0e-21 105.5 260 28.5
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 9.1e-21 105.1 259 28.6
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 1.2e-20 104.8 259 27.0
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 1.2e-20 104.8 263 33.5
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 2.0e-20 104.0 249 30.5
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 2.7e-20 103.6 249 28.1
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 3.5e-20 103.2 245 30.2
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 3.5e-20 103.2 261 28.4
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 3.5e-20 103.2 259 26.6
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 4.5e-20 102.8 255 27.1
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 4.5e-20 102.8 245 29.8
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 5.9e-20 102.4 250 31.2
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 5.9e-20 102.4 255 26.7
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 5.9e-20 102.4 259 26.6
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 5.9e-20 102.4 247 30.0
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 7.7e-20 102.1 249 29.3
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 7.7e-20 102.1 249 28.5
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 7.7e-20 102.1 249 29.7
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 7.7e-20 102.1 259 26.6
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.0e-19 101.7 261 29.9
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.0e-19 101.7 245 30.2
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 1.3e-19 101.3 247 27.9
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.3e-19 101.3 261 29.9
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 1.3e-19 101.3 249 28.1
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 1.3e-19 101.3 233 29.6
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 1.7e-19 100.9 259 26.3
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 1.7e-19 100.9 259 27.0
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 1.7e-19 100.9 249 27.3
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 2.3e-19 100.5 259 27.8
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 2.3e-19 100.5 259 27.8
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 2.3e-19 100.5 264 27.3
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 2.3e-19 100.5 255 26.7
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 2.3e-19 100.5 245 27.3
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 2.3e-19 100.5 249 28.5
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 2.9e-19 100.1 260 26.5
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 2.9e-19 100.1 245 30.2
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 2.9e-19 100.1 256 28.1
BcaB04g19613 Brassica carinata HOM05D001129 ORTHO05D031382 3.8e-19 99.8 200 34.5
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.8e-19 99.8 252 29.0
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 3.8e-19 99.8 255 27.5
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 3.8e-19 99.8 260 26.2
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 6.5e-19 99.0 259 25.9
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 6.5e-19 99.0 249 27.3
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 6.5e-19 99.0 260 28.5
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 6.5e-19 99.0 293 29.4
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 6.5e-19 99.0 257 29.6
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 1.1e-18 98.2 245 28.2
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 1.1e-18 98.2 249 29.7
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 1.5e-18 97.8 255 26.7
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 1.9e-18 97.4 258 26.0
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.9e-18 97.4 265 27.5
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 1.9e-18 97.4 260 27.7
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 2.5e-18 97.1 250 28.0
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 2.5e-18 97.1 257 27.6
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 3.2e-18 96.7 259 25.1
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 4.2e-18 96.3 255 25.9
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 4.2e-18 96.3 259 26.3
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 4.2e-18 96.3 268 28.4
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 5.5e-18 95.9 249 29.3
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 7.2e-18 95.5 258 26.0
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 9.5e-18 95.1 248 28.6
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 9.5e-18 95.1 245 27.8
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.2e-17 94.7 245 28.2
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 1.6e-17 94.4 259 25.1
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 2.1e-17 94.0 249 28.9
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.8e-17 93.6 254 30.3
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-17 93.2 249 28.9
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 4.7e-17 92.8 255 24.7
BcaC03g17727 Brassica carinata HOM05D001129 ORTHO05D017518 6.1e-17 92.4 267 27.0
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 6.1e-17 92.4 250 28.0
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 8.0e-17 92.0 242 28.9
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 8.0e-17 92.0 277 26.4
FvH4_3g40410 Fragaria vesca HOM05D001129 ORTHO05D003814 1.0e-16 91.7 276 26.4
A02p38070 Brassica napus HOM05D001129 ORTHO05D017518 1.4e-16 91.3 267 27.3
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.4e-16 91.3 249 26.9
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-16 90.9 250 25.6
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.3e-16 90.5 253 27.3
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 3.0e-16 90.1 256 27.3
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.0e-16 90.1 253 27.3
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 4.0e-16 89.7 247 28.3
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 8.8e-16 88.6 253 26.5
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 8.8e-16 88.6 213 26.8
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 1.5e-15 87.8 251 27.5
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 4.4e-15 86.3 249 25.7
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 5.7e-15 85.9 263 24.7
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.7e-15 85.9 249 25.7
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.5e-15 85.5 254 26.0
BcaC09g48997 Brassica carinata HOM05D001129 ORTHO05D018671 9.8e-15 85.1 243 24.7
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 1.3e-14 84.7 252 27.0
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.7e-14 84.3 249 26.1
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 3.7e-14 83.2 250 26.8
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.3e-14 82.0 288 26.7
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.3e-14 82.0 251 25.9
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.1e-13 80.1 258 25.2
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 4.1e-13 79.7 293 23.9
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 1.6e-12 77.8 249 26.1
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 2.7e-12 77.0 288 26.0
A02p38190 Brassica napus HOM05D001129 ORTHO05D017518 5.9e-12 75.9 262 24.0
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.9e-12 75.9 237 28.3
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 7.8e-12 75.5 245 25.7
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 1.1e-10 71.6 244 23.8
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 1.1e-10 71.6 263 25.1
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 5.6e-10 69.3 180 27.8
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 2.1e-09 67.4 175 28.0
BcaC07g42543 Brassica carinata HOM05D001129 ORTHO05D003814 1.0e-08 65.1 158 30.4
Pp3c1_4220 Physcomitrium patens HOM05D001129 ORTHO05D003814 1.0e-08 65.1 253 23.7
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 1.4e-08 64.7 190 27.4
Gohir.D09G051901 Gossypium hirsutum HOM05D001129 ORTHO05D003814 3.0e-08 63.5 102 36.3
Gorai.006G004900 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.0e-08 63.5 123 34.1
Gorai.007G260700 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.0e-08 63.5 123 34.1
Gorai.009G402100 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.0e-08 63.5 102 36.3
Medtr5g095180 Medicago truncatula HOM05D001129 ORTHO05D003814 4.0e-08 63.2 239 23.0
Gohir.D11G291701 Gossypium hirsutum HOM05D001129 ORTHO05D015145 5.2e-08 62.8 102 35.3
Actinidia25196 Actinidia chinensis HOM05D001129 ORTHO05D003814 6.8e-08 62.4 118 28.0
FvH4_3g40413 Fragaria vesca HOM05D001129 ORTHO05D003814 1.2e-07 61.6 201 24.9
Gorai.009G417200 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.2e-07 61.6 102 35.3
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 2.6e-07 60.5 199 23.6
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.6e-07 60.5 106 30.2
Gohir.D07G130166 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.6e-07 60.5 102 36.3
Oeu015569.1 Olea europaea HOM05D001129 ORTHO05D003814 3.4e-07 60.1 111 35.1
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 4.4e-07 59.7 125 26.4
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 5.7e-07 59.3 141 34.0
C02p57350 Brassica napus HOM05D001129 ORTHO05D026758 5.7e-07 59.3 131 31.3
SEGI_13924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 5.7e-07 59.3 106 30.2
CAN.G3.33 Capsicum annuum HOM05D001129 ORTHO05D003814 6.4e-06 55.8 89 36.0
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 8.3e-06 55.5 125 25.6


User provided reference genes

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