Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G12810 Arabidopsis lyrata HOM05D001129 ORTHO05D031382 3.9e-227 791.2 416 100.0
BcaB04g19613 Brassica carinata HOM05D001129 ORTHO05D031382 6.9e-67 258.8 406 35.7
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 2.2e-44 184.1 420 31.4
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 2.8e-44 183.7 420 31.4
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 2.8e-44 183.7 420 31.4
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 8.3e-44 182.2 385 32.5
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 1.8e-43 181.0 383 32.1
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 2.4e-43 180.6 381 33.1
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 5.4e-43 179.5 382 32.2
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 5.4e-43 179.5 420 31.7
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 1.2e-42 178.3 381 32.8
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 1.2e-42 178.3 383 32.4
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 1.6e-42 177.9 384 30.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.7e-42 177.2 381 32.8
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.7e-42 177.2 382 29.6
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 2.7e-42 177.2 423 31.2
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 3.5e-42 176.8 420 31.0
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 4.5e-42 176.4 381 32.8
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 5.9e-42 176.0 388 32.5
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 7.7e-42 175.6 383 32.4
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 1.0e-41 175.3 382 31.7
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 2.3e-41 174.1 384 29.9
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 3.8e-41 173.3 381 31.8
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 3.8e-41 173.3 381 33.1
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 3.8e-41 173.3 384 31.0
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 3.8e-41 173.3 420 29.8
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 5.0e-41 172.9 381 33.1
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 5.0e-41 172.9 421 29.7
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 6.5e-41 172.6 387 31.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 6.5e-41 172.6 381 33.1
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 6.5e-41 172.6 387 31.8
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 6.5e-41 172.6 423 30.0
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 6.5e-41 172.6 420 30.0
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 8.6e-41 172.2 381 32.8
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 8.6e-41 172.2 384 31.2
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.1e-40 171.8 382 30.6
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 1.1e-40 171.8 385 31.2
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.9e-40 171.0 422 30.1
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 1.9e-40 171.0 381 32.5
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.5e-40 170.6 382 29.1
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 2.5e-40 170.6 384 31.8
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 2.5e-40 170.6 386 30.6
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 3.2e-40 170.2 375 31.5
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 3.2e-40 170.2 420 29.5
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.2e-40 170.2 383 31.1
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 5.5e-40 169.5 386 30.6
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 5.5e-40 169.5 385 31.4
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 7.2e-40 169.1 385 29.6
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 7.2e-40 169.1 386 31.3
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 9.5e-40 168.7 382 31.7
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 9.5e-40 168.7 386 30.6
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 9.5e-40 168.7 385 31.2
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 1.2e-39 168.3 390 31.0
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 1.2e-39 168.3 385 31.4
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 1.6e-39 167.9 385 30.9
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 2.1e-39 167.5 403 30.5
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 2.1e-39 167.5 385 29.9
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 2.1e-39 167.5 386 31.1
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 2.8e-39 167.2 424 30.4
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 3.6e-39 166.8 385 30.9
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-39 166.8 383 30.8
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-39 166.8 380 28.9
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 4.7e-39 166.4 446 29.6
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 4.7e-39 166.4 383 30.8
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 6.1e-39 166.0 385 30.9
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.1e-39 166.0 380 29.7
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.0e-39 165.6 397 31.2
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 8.0e-39 165.6 385 31.2
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.0e-38 165.2 383 30.5
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 1.4e-38 164.9 384 31.0
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 1.8e-38 164.5 380 29.5
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.8e-38 164.5 397 31.0
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 2.3e-38 164.1 382 30.6
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 2.3e-38 164.1 423 30.5
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.0e-38 163.7 379 29.8
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 4.0e-38 163.3 384 29.7
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 4.0e-38 163.3 385 31.4
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 6.8e-38 162.5 385 30.6
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 6.8e-38 162.5 387 30.2
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 8.8e-38 162.2 423 30.0
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 1.5e-37 161.4 385 30.9
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 2.6e-37 160.6 384 29.2
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.4e-37 160.2 402 29.9
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 1.3e-36 158.3 385 30.4
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.7e-36 157.9 385 29.9
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 2.2e-36 157.5 383 27.9
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 2.8e-36 157.1 383 30.3
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 2.8e-36 157.1 418 28.9
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.7e-36 156.8 383 30.3
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.7e-36 156.8 392 28.8
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 4.9e-36 156.4 382 28.5
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 8.3e-36 155.6 383 29.2
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 1.1e-35 155.2 384 30.2
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 1.4e-35 154.8 384 29.2
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 2.4e-35 154.1 383 31.1
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 3.1e-35 153.7 402 30.1
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 3.1e-35 153.7 351 32.5
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 3.1e-35 153.7 418 29.7
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 9.2e-35 152.1 385 29.6
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.2e-34 151.8 383 28.5
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.7e-34 150.6 425 28.0
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 4.5e-34 149.8 380 30.0
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 5.9e-34 149.4 382 29.6
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 7.8e-34 149.1 360 30.6
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.8e-34 149.1 352 29.8
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 1.3e-33 148.3 384 28.1
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 3.8e-33 146.7 424 28.3
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 1.1e-32 145.2 390 30.8
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 4.3e-32 143.3 382 28.3
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 4.3e-32 143.3 405 28.6
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 1.4e-30 138.3 387 29.7
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 1.4e-30 138.3 381 28.6
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 5.2e-30 136.3 385 29.1
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 5.2e-30 136.3 381 28.3
C01p43680 Brassica napus HOM05D001129 ORTHO05D018671 1.2e-26 125.2 347 28.0
BolC1t04327H Brassica oleracea HOM05D001129 ORTHO05D018671 1.2e-26 125.2 347 28.0
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.1e-24 118.6 351 28.8
Ca_23248_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 2.8e-23 114.0 392 25.8
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 3.6e-23 113.6 385 24.4
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 4.7e-23 113.2 340 29.1
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 4.7e-23 113.2 340 29.1
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 1.4e-22 111.7 449 24.1
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 5.2e-22 109.8 388 26.3
A09p66710 Brassica napus HOM05D001129 ORTHO05D003814 1.2e-21 108.6 285 27.4
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 1.3e-20 105.1 388 25.0
BolC9t53447H Brassica oleracea HOM05D001129 ORTHO05D031382 6.4e-20 102.8 106 45.3
TPR.G27380 Trifolium pratense HOM05D001129 ORTHO05D003814 1.9e-19 101.3 313 26.2
Cpa.g.sc2.304 Carica papaya HOM05D001129 ORTHO05D003814 3.2e-19 100.5 248 31.0
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.7e-18 97.4 242 31.4
Medtr5g095180 Medicago truncatula HOM05D001129 ORTHO05D003814 3.5e-18 97.1 367 22.9
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 4.6e-18 96.7 294 28.2
Psat2g172400 Pisum sativum HOM05D001129 ORTHO05D003814 6.0e-18 96.3 158 34.8
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 1.3e-17 95.1 294 26.9
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.6e-17 92.4 231 31.2
FAN18G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.6e-17 92.4 231 31.2
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 1.5e-16 91.7 416 21.9
Pp3c1_4220 Physcomitrium patens HOM05D001129 ORTHO05D003814 4.3e-16 90.1 378 24.9
Oeu055223.1 Olea europaea HOM05D001129 ORTHO05D003814 4.7e-15 86.7 351 25.4
AT5G01440 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 6.2e-15 86.3 183 31.7
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 6.2e-15 86.3 363 25.9
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.1e-14 85.5 299 27.4
RcHm_v2.0_Chr1g0322401 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-14 84.7 220 30.9
HPP92_006786 Vanilla planifolia HOM05D001129 ORTHO05D003814 4.0e-14 83.6 295 24.7
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 8.9e-14 82.4 211 29.9
RcHm_v2.0_Chr5g0074151 Rosa chinensis HOM05D001129 ORTHO05D003814 8.3e-12 75.9 105 36.2
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 1.1e-11 75.5 139 33.8
BraA09t42010Z Brassica rapa HOM05D001129 ORTHO05D003814 2.1e-10 71.2 281 24.6
FvH4_3g40413 Fragaria vesca HOM05D001129 ORTHO05D003814 3.5e-10 70.5 215 29.8
FAN21G2271 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.0e-09 68.9 90 41.1
RcHm_v2.0_Chr5g0072891 Rosa chinensis HOM05D001129 ORTHO05D003814 1.3e-09 68.6 115 31.3
SHI11186 Sapria himalayana HOM05D001129 ORTHO05D003814 1.3e-09 68.6 88 39.8
TPR.G39949 Trifolium pratense HOM05D001129 ORTHO05D003814 7.3e-08 62.8 44 63.6
Peaxi162Scf00960g00119 Petunia axillaris HOM05D001129 ORTHO05D003814 2.8e-07 60.8 44 56.8
Pp3c16_8340 Physcomitrium patens HOM05D001129 ORTHO05D003157 8.1e-07 59.3 391 19.9
arahy.Tifrunner.gnm1.ann1.P9HJFB Arachis hypogaea HOM05D001129 ORTHO05D003814 6.8e-06 56.2 108 27.8
SEGI_03863 Sequoiadendron giganteum HOM05D001129 ORTHO05D019282 8.9e-06 55.8 145 32.4


User provided reference genes

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