Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.4e-44 182.6 93 100.0
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.2e-43 179.5 93 97.8
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.3e-41 171.4 93 92.5
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.2e-40 169.5 93 91.4
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 1.6e-40 169.1 93 94.6
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.8e-40 168.3 93 93.5
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 8.9e-39 163.3 93 87.1
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.6e-38 161.8 93 90.3
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.4e-38 161.4 93 89.2
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 1.7e-37 159.1 93 88.2
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 2.9e-37 158.3 93 88.2
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 3.7e-37 157.9 93 86.0
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 2.4e-36 155.2 93 87.1
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 2.4e-36 155.2 93 87.1
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 2.4e-36 155.2 93 82.8
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.6e-35 152.5 93 80.6
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 7.8e-35 150.2 93 82.8
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 7.8e-35 150.2 93 82.8
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.0e-34 149.8 93 82.8
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.0e-34 149.8 91 80.2
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 1.3e-34 149.4 93 82.8
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 3.0e-34 148.3 93 80.6
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 9.5e-33 143.3 93 77.4
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.2e-32 142.9 93 77.4
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.6e-32 142.5 93 78.5
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.6e-32 142.5 93 78.5
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.7e-32 141.0 93 75.3
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.7e-32 141.0 93 74.2
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.7e-32 141.0 93 74.2
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.4e-31 139.4 95 75.8
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 2.3e-31 138.7 93 74.2
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 5.2e-31 137.5 83 79.5
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 8.9e-31 136.7 93 72.0
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.5e-30 136.0 93 71.0
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 2.6e-30 135.2 93 72.0
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.6e-30 135.2 79 79.7
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 3.4e-30 134.8 95 74.7
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 3.4e-30 134.8 88 71.6
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 4.4e-30 134.4 94 70.2
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 5.8e-30 134.0 94 72.3
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 5.8e-30 134.0 95 72.6
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 7.5e-30 133.7 93 69.9
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 1.7e-29 132.5 93 69.9
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.7e-29 132.5 93 67.7
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 68.8
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 68.8
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 68.8
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 68.8
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.2e-29 132.1 94 69.1
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.2e-29 132.1 94 69.1
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 2.2e-29 132.1 93 68.8
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 69.9
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 71.0
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 3.7e-29 131.3 93 71.0
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 3.7e-29 131.3 94 72.3
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 4.9e-29 131.0 93 73.1
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 6.4e-29 130.6 93 66.7
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 8.3e-29 130.2 92 71.7
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 70.2
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 70.2
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 70.2
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 1.1e-28 129.8 92 69.6
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 71.3
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 1.1e-28 129.8 93 68.8
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.4e-28 129.4 93 67.7
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.4e-28 129.4 92 68.5
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 69.9
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 69.9
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 3.2e-28 128.3 91 72.5
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 3.2e-28 128.3 95 69.5
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 3.2e-28 128.3 94 70.2
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 4.1e-28 127.9 95 67.4
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 4.1e-28 127.9 92 71.7
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 4.1e-28 127.9 93 67.7
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 4.1e-28 127.9 93 72.0
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 4.1e-28 127.9 92 67.4
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 4.1e-28 127.9 94 72.3
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 4.1e-28 127.9 94 69.1
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 4.1e-28 127.9 94 70.2
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.4e-28 127.5 93 69.9
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 7.1e-28 127.1 93 72.0
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 7.1e-28 127.1 93 68.8
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 7.1e-28 127.1 92 69.6
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 7.1e-28 127.1 94 69.1
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 7.1e-28 127.1 91 67.0
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 7.1e-28 127.1 94 70.2
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 9.2e-28 126.7 94 69.1
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 9.2e-28 126.7 92 68.5
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 9.2e-28 126.7 92 68.5
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 9.2e-28 126.7 92 68.5
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 9.2e-28 126.7 94 68.1
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 9.2e-28 126.7 93 68.8
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.2e-27 126.3 92 64.1
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.2e-27 126.3 92 67.4
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.2e-27 126.3 92 67.4
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.2e-27 126.3 91 62.6
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.2e-27 126.3 93 69.9
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.2e-27 126.3 93 69.9
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.6e-27 125.9 93 66.7
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.6e-27 125.9 94 67.0
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 2.1e-27 125.6 88 69.3
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 2.7e-27 125.2 93 68.8
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.7e-27 125.2 95 69.5
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 4.6e-27 124.4 80 70.0
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 4.6e-27 124.4 92 68.5
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 4.6e-27 124.4 91 67.0
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 6.0e-27 124.0 94 68.1
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 7.8e-27 123.6 93 62.4
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 7.8e-27 123.6 92 60.9
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 1.0e-26 123.2 94 70.2
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.3e-26 122.9 94 70.2
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 1.3e-26 122.9 94 64.9
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 1.3e-26 122.9 93 68.8
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 3.0e-26 121.7 91 61.5
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 3.0e-26 121.7 93 64.5
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 3.0e-26 121.7 94 62.8
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.9e-26 121.3 92 69.6
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 3.9e-26 121.3 92 66.3
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 5.1e-26 120.9 93 61.3
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 5.1e-26 120.9 92 63.0
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 5.1e-26 120.9 93 67.7
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 6.6e-26 120.6 91 67.0
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 8.6e-26 120.2 94 66.0
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 8.6e-26 120.2 94 68.1
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 1.1e-25 119.8 93 64.5
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.5e-25 119.4 94 67.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 1.5e-25 119.4 93 59.1
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.9e-25 119.0 94 64.9
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 2.5e-25 118.6 91 67.0
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 4.3e-25 117.9 84 63.1
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 4.3e-25 117.9 93 60.2
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.3e-25 117.9 91 63.7
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 5.6e-25 117.5 91 65.9
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 7.3e-25 117.1 91 61.5
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 9.5e-25 116.7 94 63.8
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 2.8e-24 115.2 94 60.6
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.1e-23 113.2 92 64.1
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.1e-23 113.2 90 58.9
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.8e-23 112.5 93 61.3
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 2.3e-23 112.1 92 59.8
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 2.3e-23 112.1 92 59.8
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 4.0e-23 111.3 91 58.2
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 5.2e-23 110.9 91 57.1
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 8.9e-23 110.2 91 59.3
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.2e-22 109.8 94 61.7
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 4.4e-22 107.8 82 70.7
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 9.9e-22 106.7 92 63.0
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 3.7e-21 104.8 81 66.7
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 8.4e-21 103.6 73 65.8
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 1.4e-20 102.8 84 66.7
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 2.4e-20 102.1 82 64.6
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 3.2e-20 101.7 81 64.2
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.6e-19 99.4 97 54.6
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.7e-19 98.6 92 56.5
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 4.6e-19 97.8 79 62.0
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 7.8e-19 97.1 81 64.2
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.0e-18 95.1 74 60.8
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.1e-17 93.2 65 69.2
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 7.3e-17 90.5 74 58.1
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 4.7e-16 87.8 60 66.7
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 2.0e-14 82.4 66 59.1
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.3e-13 79.7 86 40.7
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 1.3e-13 79.7 72 56.9
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 8.4e-13 77.0 73 43.8
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 1.1e-12 76.6 91 40.7
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.1e-11 72.4 56 55.4
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 6.0e-11 70.9 81 45.7
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.9e-10 68.2 52 67.3
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 3.9e-10 68.2 52 67.3
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 5.6e-09 64.3 38 73.7
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 1.8e-07 59.3 84 38.1
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 4.0e-07 58.2 73 34.2
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.0e-06 55.8 72 37.5


User provided reference genes

Program Settings