Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.3e-73 279.6 144 100.0
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.7e-50 202.2 139 68.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 9.5e-48 193.7 130 73.1
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.7e-44 183.0 124 71.0
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.7e-44 183.0 124 71.0
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.7e-44 183.0 124 71.0
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 2.2e-44 182.6 123 71.5
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 6.4e-44 181.0 125 68.8
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 6.4e-44 181.0 125 68.8
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 5.4e-43 177.9 138 59.4
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 4.4e-29 131.7 115 56.5
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 8.4e-28 127.5 138 43.5
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 5.4e-27 124.8 134 43.3
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 3.0e-25 119.0 102 52.9
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.2e-23 113.6 126 50.8
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.6e-23 113.2 136 50.0
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 6.2e-23 111.3 136 44.9
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 6.2e-23 111.3 133 45.9
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.4e-22 109.4 135 39.3
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 5.2e-22 108.2 128 39.8
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 9.0e-22 107.5 103 44.7
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 1.2e-21 107.1 131 48.9
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 2.6e-21 105.9 128 40.6
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.3e-20 103.6 132 47.7
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.3e-20 103.6 131 46.6
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.7e-20 103.2 131 44.3
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.7e-20 103.2 136 41.9
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.7e-20 103.2 131 46.6
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.7e-20 103.2 132 46.2
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 2.2e-20 102.8 133 45.1
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 2.2e-20 102.8 131 45.0
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 2.2e-20 102.8 131 45.8
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.8e-20 102.1 138 37.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 4.9e-20 101.7 131 47.3
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 4.9e-20 101.7 138 43.5
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.9e-20 101.7 137 46.0
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 6.4e-20 101.3 139 43.9
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 8.4e-20 100.9 135 41.5
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.1e-19 100.5 132 43.9
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.1e-19 100.5 132 43.9
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.1e-19 100.5 132 43.9
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.4e-19 100.1 135 40.7
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 1.9e-19 99.8 133 43.6
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 2.4e-19 99.4 138 42.0
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 5.4e-19 98.2 131 42.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 7.1e-19 97.8 135 37.8
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 7.1e-19 97.8 86 48.8
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 7.1e-19 97.8 132 36.4
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 7.1e-19 97.8 126 44.4
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 9.3e-19 97.4 137 40.1
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.2e-18 97.1 137 43.1
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.2e-18 97.1 140 42.1
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.2e-18 97.1 138 42.0
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 2.7e-18 95.9 140 42.1
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 2.7e-18 95.9 132 43.2
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 2.7e-18 95.9 112 39.3
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 2.7e-18 95.9 133 42.9
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.7e-18 95.9 138 41.3
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 3.5e-18 95.5 131 44.3
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 3.5e-18 95.5 136 41.2
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 6.0e-18 94.7 133 41.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 7.8e-18 94.4 116 49.1
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 7.8e-18 94.4 133 44.4
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.0e-17 94.0 138 39.1
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.0e-17 94.0 94 45.7
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.3e-17 93.6 136 42.6
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 1.3e-17 93.6 138 42.0
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 2.3e-17 92.8 138 41.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 2.3e-17 92.8 138 41.3
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.3e-17 92.8 132 43.9
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.3e-17 92.8 132 43.9
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 3.0e-17 92.4 138 41.3
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 3.9e-17 92.0 132 40.2
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 3.9e-17 92.0 132 40.9
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 3.9e-17 92.0 133 40.6
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 3.9e-17 92.0 133 42.9
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 3.9e-17 92.0 116 45.7
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 5.1e-17 91.7 132 40.9
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.1e-17 91.7 136 41.9
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 5.1e-17 91.7 138 41.3
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 5.1e-17 91.7 138 39.9
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 8.7e-17 90.9 131 42.0
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.1e-16 90.5 140 42.1
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.1e-16 90.5 133 42.1
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 1.5e-16 90.1 133 42.1
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.9e-16 89.7 132 40.9
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 2.5e-16 89.4 116 46.6
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 4.3e-16 88.6 138 40.6
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 4.3e-16 88.6 133 39.8
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.6e-16 88.2 132 42.4
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 7.3e-16 87.8 133 42.1
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 7.3e-16 87.8 135 37.0
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.3e-16 87.8 132 42.4
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 7.3e-16 87.8 134 39.6
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 7.3e-16 87.8 134 39.6
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 9.6e-16 87.4 132 40.9
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 9.6e-16 87.4 131 40.5
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.3e-15 87.0 132 40.2
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.6e-15 86.7 127 40.2
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.6e-15 86.7 134 38.8
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 2.1e-15 86.3 134 39.6
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 2.8e-15 85.9 83 47.0
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 3.6e-15 85.5 136 32.4
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 3.6e-15 85.5 132 38.6
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 6.2e-15 84.7 132 40.2
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 2.4e-14 82.8 129 40.3
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 4.0e-14 82.0 132 40.2
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 4.0e-14 82.0 131 40.5
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 4.0e-14 82.0 142 38.7
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 4.0e-14 82.0 142 38.7
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 4.0e-14 82.0 130 39.2
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 5.3e-14 81.6 134 38.1
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.6e-13 79.3 124 40.3
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 2.9e-12 75.9 130 39.2
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 3.8e-12 75.5 133 37.6
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 2.4e-11 72.8 124 27.4
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 1.2e-10 70.5 94 36.2
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.2e-10 70.5 97 45.4
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 2.1e-10 69.7 114 32.5
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 7.9e-10 67.8 126 31.0
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-09 67.0 66 51.5
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 3.9e-09 65.5 117 33.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.9e-09 65.5 93 34.4
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 3.3e-08 62.4 62 45.2
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 7.4e-08 61.2 70 38.6
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 6.2e-07 58.2 95 37.9
BolC7t40460H Brassica oleracea HOM05D001969 ORTHO05D003463 1.4e-06 57.0 44 59.1


User provided reference genes

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