Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 3.2e-83 311.6 147 100.0
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 4.2e-83 311.2 147 99.3
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 7.1e-83 310.5 147 99.3
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.8e-78 295.8 147 95.9
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.4e-78 295.4 147 95.9
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 3.2e-75 285.0 147 93.9
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 3.2e-75 285.0 147 93.9
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 4.2e-75 284.6 147 93.2
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 7.9e-74 280.4 148 93.2
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 2.3e-73 278.9 147 89.1
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 4.3e-72 274.6 148 89.2
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.8e-71 271.9 148 89.2
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 8.2e-71 270.4 147 87.1
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.3e-70 267.7 147 87.1
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.0e-68 263.5 147 85.7
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.9e-68 261.9 147 85.0
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 8.4e-68 260.4 147 84.4
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 8.4e-68 260.4 147 85.0
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 2.3e-65 252.3 151 82.8
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.1e-64 250.0 146 80.1
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.5e-64 249.6 146 79.5
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.6e-63 246.1 150 80.7
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.2e-63 245.7 147 78.9
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 2.8e-63 245.4 147 78.9
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 3.7e-63 245.0 147 80.3
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 4.8e-63 244.6 143 80.4
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.8e-63 244.6 146 78.1
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 4.8e-63 244.6 147 80.3
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 8.2e-63 243.8 143 79.7
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 8.2e-63 243.8 144 80.6
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 3.1e-62 241.9 132 85.6
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 6.9e-62 240.7 132 84.8
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 6.9e-62 240.7 136 83.1
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 6.9e-62 240.7 132 85.6
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 6.9e-62 240.7 143 79.7
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 9.0e-62 240.4 148 79.7
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 9.0e-62 240.4 152 77.0
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.2e-61 240.0 146 78.8
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.5e-61 239.6 148 77.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.5e-61 239.6 147 78.9
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.0e-61 239.2 129 86.0
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 2.0e-61 239.2 141 81.6
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 2.6e-61 238.8 134 82.1
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 5.9e-61 237.7 147 79.6
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 5.9e-61 237.7 147 75.5
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.6e-61 237.3 147 78.9
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.6e-61 237.3 147 78.9
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.0e-60 236.9 148 76.4
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.0e-60 236.9 144 79.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.7e-60 236.1 112 97.3
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.8e-60 235.0 148 76.4
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 3.8e-60 235.0 147 76.9
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.8e-60 235.0 118 89.8
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 5.0e-60 234.6 146 78.1
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 5.0e-60 234.6 144 78.5
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 5.0e-60 234.6 144 78.5
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 6.5e-60 234.2 149 77.9
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 8.5e-60 233.8 147 76.2
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.1e-59 233.4 148 75.7
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.1e-59 233.4 149 73.8
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.1e-59 233.4 148 75.0
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 1.9e-59 232.6 135 81.5
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 2.5e-59 232.3 142 77.5
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 2.5e-59 232.3 149 75.8
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 3.2e-59 231.9 148 76.4
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 3.2e-59 231.9 147 74.8
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 3.2e-59 231.9 147 74.1
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 4.2e-59 231.5 135 80.7
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 4.2e-59 231.5 143 78.3
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.2e-59 231.5 157 72.0
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 7.2e-59 230.7 144 76.4
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 9.4e-59 230.3 146 75.3
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 1.2e-58 229.9 139 78.4
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.2e-58 229.9 147 76.2
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.6e-58 229.6 149 74.5
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 143 76.2
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.6e-58 229.6 149 75.2
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.6e-58 229.6 148 75.0
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.7e-58 228.8 150 74.7
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 2.7e-58 228.8 122 86.1
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 4.6e-58 228.0 147 74.1
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 6.1e-58 227.6 147 74.1
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 6.1e-58 227.6 112 90.2
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 134 78.4
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 134 78.4
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 134 78.4
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 2.3e-57 225.7 148 72.3
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 3.9e-57 224.9 138 77.5
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 3.9e-57 224.9 129 80.6
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 6.7e-57 224.2 143 72.7
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 8.8e-57 223.8 153 70.6
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.5e-56 223.0 142 73.2
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 1.9e-56 222.6 151 70.9
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 9.7e-56 220.3 130 78.5
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.2e-55 219.2 122 81.1
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 2.8e-55 218.8 146 73.3
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 6.3e-55 217.6 133 77.4
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 1.8e-54 216.1 112 84.8
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 9.1e-54 213.8 131 75.6
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.0e-53 212.6 162 64.8
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.0e-53 212.6 162 64.8
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 3.4e-53 211.8 134 76.1
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.4e-53 211.8 124 79.0
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 5.9e-53 211.1 120 79.2
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 7.7e-53 210.7 106 86.8
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 7.7e-53 210.7 146 68.5
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 5.0e-52 208.0 114 82.5
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 5.0e-52 208.0 159 64.8
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 6.5e-52 207.6 139 69.1
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 4.2e-51 204.9 105 87.6
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.6e-50 203.0 129 72.9
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 7.9e-50 200.7 120 75.0
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.0e-49 200.3 174 60.9
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 3.9e-49 198.4 122 71.3
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.5e-48 196.4 104 82.7
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.0e-48 196.1 112 84.8
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.4e-48 194.9 104 81.7
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 6.3e-47 191.0 157 65.6
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 6.3e-47 191.0 121 73.6
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.8e-44 181.8 149 64.4
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.9e-43 179.5 119 73.1
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.2e-43 178.7 153 62.1
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 9.4e-43 177.2 91 82.4
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 4.4e-40 168.3 114 72.8
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.1e-38 163.7 152 61.2
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 4.1e-38 161.8 88 85.2
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 7.7e-37 157.5 78 84.6
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.7e-36 156.4 114 67.5
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.5e-36 154.5 101 79.2
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.8e-31 138.3 87 81.6
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 8.2e-31 137.5 73 82.2
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.0e-28 130.6 104 61.5
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 8.8e-25 117.5 67 71.6
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 2.4e-22 109.4 62 74.2
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 1.0e-20 104.0 52 90.4
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.3e-17 92.8 305 26.9
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 3.7e-15 85.5 58 74.1
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.3e-15 84.3 52 69.2
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.4e-14 83.6 74 66.2
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.6e-13 80.1 42 88.1
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 5.6e-11 71.6 37 91.9
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.1e-10 68.2 40 70.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.0e-09 67.4 49 63.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 2.2e-07 59.7 41 73.2
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.9e-07 58.5 30 73.3


User provided reference genes

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