Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.3e-265 918.3 460 100.0
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 6.8e-249 863.6 460 93.9
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 1.2e-234 816.2 456 88.8
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 8.7e-228 793.5 458 87.3
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 6.2e-226 787.3 461 85.0
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 4.8e-218 761.1 462 84.6
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 1.2e-216 756.5 463 84.4
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 4.5e-216 754.6 463 84.0
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.9e-211 739.2 463 83.4
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 2.8e-210 735.3 494 79.1
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.4e-209 732.3 458 80.6
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 1.1e-193 680.2 462 74.5
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 3.0e-164 582.4 443 65.5
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 4.4e-163 578.6 442 66.3
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 7.5e-163 577.8 450 64.7
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 2.2e-162 576.2 450 65.3
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 4.1e-161 572.0 460 63.7
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 7.0e-161 571.2 436 65.8
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 3.5e-160 568.9 436 65.1
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 3.8e-159 565.5 433 65.6
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 4.2e-158 562.0 456 62.7
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 2.1e-157 559.7 447 64.4
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 2.1e-157 559.7 436 64.0
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.6e-157 558.9 456 62.3
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 6.1e-157 558.1 446 65.0
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 8.8e-156 554.3 445 63.6
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 4.4e-155 552.0 445 64.0
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 7.5e-155 551.2 449 62.6
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 9.8e-155 550.8 441 65.5
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 4.9e-154 548.5 451 59.9
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 4.9e-154 548.5 441 65.1
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 6.3e-154 548.1 450 63.8
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.1e-153 547.4 317 86.4
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 4.1e-153 545.4 459 59.5
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 7.0e-153 544.7 451 59.6
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.5e-152 542.3 450 63.6
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 3.5e-152 542.3 452 61.1
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 4.5e-152 542.0 444 61.0
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 7.7e-152 541.2 317 86.4
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 1.7e-151 540.0 437 61.3
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 8.6e-151 537.7 433 61.9
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 2.5e-150 536.2 414 64.5
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 3.3e-150 535.8 442 62.7
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.3e-150 535.8 454 62.8
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 7.3e-150 534.6 443 60.5
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 2.1e-149 533.1 457 59.7
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 3.6e-149 532.3 442 62.7
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 4.7e-149 531.9 433 63.3
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.0e-149 531.2 443 62.3
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.8e-148 530.0 408 64.5
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 8.9e-148 527.7 446 59.9
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.2e-147 527.3 458 60.0
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 1.5e-147 526.9 443 62.5
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 1.5e-147 526.9 402 66.7
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.5e-147 526.9 443 59.8
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 2.6e-147 526.2 433 61.0
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 3.7e-146 522.3 433 60.3
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 9.2e-145 517.7 453 58.3
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 9.2e-145 517.7 448 58.7
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 9.2e-145 517.7 441 61.0
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.0e-143 514.2 434 60.1
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.3e-143 513.8 434 59.0
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 2.5e-142 509.6 438 59.4
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 7.3e-142 508.1 460 58.7
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.2e-141 507.3 431 60.3
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 1.6e-141 506.9 447 57.3
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 2.8e-141 506.1 433 58.9
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 3.6e-141 505.8 438 59.1
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 3.6e-141 505.8 436 58.9
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.0e-140 504.2 443 59.6
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.3e-140 503.1 411 60.6
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 3.4e-139 499.2 441 58.7
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 2.9e-138 496.1 446 57.0
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 9.2e-137 491.1 391 63.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 1.6e-133 480.3 449 59.0
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 8.9e-132 474.6 400 61.0
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 4.4e-131 472.2 444 56.1
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 4.6e-128 462.2 437 56.5
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 8.6e-127 458.0 514 49.8
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 2.1e-125 453.4 438 53.4
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 4.4e-123 445.7 363 62.5
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 9.9e-123 444.5 452 52.0
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 2.9e-122 443.0 438 50.9
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.3e-118 429.1 443 54.0
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.0e-116 422.5 433 55.0
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 4.0e-116 422.5 447 51.0
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 5.2e-116 422.2 449 49.4
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 5.1e-111 405.6 320 64.7
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.9e-110 403.7 309 62.8
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 3.4e-107 392.9 365 53.4
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 4.5e-107 392.5 369 58.0
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 7.6e-107 391.7 715 36.2
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 2.7e-104 383.3 297 63.6
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 7.6e-99 365.2 304 58.9
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 9.9e-99 364.8 319 60.2
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.1e-97 361.3 375 47.7
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 4.6e-96 355.9 434 46.5
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.3e-95 353.6 385 47.8
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 2.6e-91 340.1 312 56.1
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 3.2e-89 333.2 311 57.2
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 6.5e-82 308.9 231 66.2
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 3.7e-77 293.1 347 47.6
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.7e-74 284.3 378 46.0
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.7e-69 267.7 452 38.5
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 6.7e-63 245.7 222 56.8
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 8.8e-63 245.4 248 54.8
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.8e-61 240.4 163 66.3
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 3.5e-59 233.4 229 55.9
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 6.5e-58 229.2 215 56.3
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 5.3e-52 209.5 212 52.8
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 8.3e-45 185.7 135 68.9
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 5.0e-42 176.4 238 43.7
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 6.5e-42 176.0 136 61.8
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 7.5e-38 162.5 157 53.5
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 2.7e-35 154.1 144 58.3
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.8e-32 144.1 136 59.6
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 4.1e-28 130.2 101 63.4
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 2.7e-27 127.5 135 54.8
AL1G13210 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.1e-24 117.9 62 95.2
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.7e-21 108.2 432 25.7
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 8.3e-21 105.9 105 46.7
AL1G10030 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.4e-20 105.1 54 96.3
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 1.9e-20 104.8 449 23.4
AL4G27190 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 4.1e-20 103.6 54 94.4
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 2.3e-18 97.8 425 24.7
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 4.7e-16 90.1 140 40.7
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 2.3e-15 87.8 75 60.0
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 4.4e-14 83.6 73 60.3
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.4e-07 61.2 35 80.0


User provided reference genes

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