Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.2e-305 1052.4 513 100.0
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.8e-295 1018.5 510 97.3
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.8e-282 975.3 511 94.5
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.8e-282 975.3 511 94.5
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 4.0e-282 974.2 510 92.2
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-281 972.6 509 91.9
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.4e-279 965.7 507 91.3
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 7.0e-279 963.4 509 90.8
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 7.0e-279 963.4 509 90.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 9.2e-279 963.0 512 90.2
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 2.1e-278 961.8 509 90.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.5e-278 961.1 509 90.8
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.5e-278 961.1 509 90.8
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.0e-277 959.5 510 90.4
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.3e-277 958.4 512 90.2
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-275 952.6 508 90.2
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.2e-272 941.8 504 89.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 8.1e-267 923.3 499 88.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.7e-264 915.6 499 87.6
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.2e-264 915.2 500 87.0
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 8.4e-264 913.3 498 86.9
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.1e-263 912.9 506 86.0
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.4e-263 912.5 525 83.6
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.4e-263 912.5 525 83.6
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.4e-263 912.5 505 85.9
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 4.2e-263 911.0 516 84.1
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.1e-262 908.7 507 85.6
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 4.6e-262 907.5 507 85.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 6.0e-262 907.1 507 85.4
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 7.8e-262 906.7 507 85.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.0e-261 906.4 499 85.8
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.7e-261 905.6 499 85.8
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.3e-261 905.2 499 86.4
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.7e-261 903.3 512 84.4
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 8.7e-261 903.3 501 86.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-260 902.9 510 85.1
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.1e-260 902.9 510 85.1
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.9e-260 902.1 499 86.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 3.3e-260 901.4 510 84.5
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.3e-260 901.0 501 85.6
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 7.3e-260 900.2 499 86.0
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.3e-259 899.4 510 84.5
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.3e-259 899.4 499 85.2
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.6e-259 899.0 509 83.5
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.1e-259 898.7 506 84.2
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.8e-259 898.3 502 85.7
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.8e-259 898.3 498 85.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.6e-259 897.9 498 85.5
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 3.6e-259 897.9 512 84.2
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 4.8e-259 897.5 504 84.9
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.8e-259 897.5 510 84.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 8.1e-259 896.7 510 84.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-258 896.3 510 83.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.8e-258 895.6 499 85.4
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 2.4e-258 895.2 516 82.4
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 2.4e-258 895.2 516 82.4
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.1e-258 894.8 506 83.2
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.1e-258 894.8 506 84.0
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.0e-258 893.3 510 83.9
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 9.0e-258 893.3 516 82.2
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.5e-257 892.5 509 84.1
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.0e-257 892.1 510 83.7
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 4.4e-257 891.0 502 83.9
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 7.6e-257 890.2 505 84.2
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 2.2e-256 888.6 507 83.2
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.9e-256 888.3 538 79.7
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.9e-256 888.3 505 84.2
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.9e-256 888.3 501 84.4
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.9e-256 888.3 501 84.8
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.9e-256 888.3 499 83.8
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.9e-256 887.5 500 83.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 8.4e-256 886.7 505 84.0
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.4e-255 885.9 505 84.0
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.4e-255 885.9 507 83.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.4e-255 885.9 504 83.3
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.9e-255 885.6 505 83.0
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 4.2e-255 884.4 510 82.2
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 7.1e-255 883.6 498 83.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 7.1e-255 883.6 553 77.9
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 2.7e-254 881.7 501 82.4
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.5e-254 881.3 499 83.4
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 7.8e-254 880.2 500 83.2
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.0e-253 879.8 505 82.8
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.3e-253 879.4 513 80.7
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.3e-253 879.4 493 85.8
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.3e-253 879.4 499 83.4
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 3.9e-253 877.9 519 81.7
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 5.1e-253 877.5 504 81.7
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.1e-252 876.3 491 85.1
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.9e-252 875.5 498 83.7
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.9e-252 875.5 515 81.9
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.9e-252 875.5 493 84.8
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.5e-252 875.2 509 82.1
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.3e-252 874.8 502 81.7
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 7.3e-252 873.6 524 79.4
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.1e-251 872.1 502 82.5
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.8e-251 871.7 496 82.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.5e-249 865.9 510 81.4
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 2.0e-249 865.5 514 80.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 3.8e-248 861.3 510 80.6
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 3.8e-248 861.3 510 81.0
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.9e-245 851.3 511 77.5
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.7e-245 850.5 498 79.9
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.6e-241 838.6 498 77.7
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.9e-240 835.1 505 76.0
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 8.2e-235 817.0 515 76.7
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.4e-234 815.5 501 78.4
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 4.5e-233 811.2 505 74.5
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 6.1e-230 800.8 523 72.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.9e-229 798.1 538 72.9
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 7.4e-228 793.9 523 72.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.3e-227 790.8 509 78.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 4.5e-225 784.6 412 92.5
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 7.7e-225 783.9 506 71.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 8.5e-224 780.4 501 72.9
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.5e-223 778.9 510 77.5
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.1e-221 771.2 502 70.5
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.3e-220 768.5 502 69.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.3e-219 766.5 502 69.7
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.0e-216 756.9 473 78.9
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 7.9e-214 747.3 502 67.9
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.5e-207 726.5 501 68.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.4e-202 709.9 397 86.4
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.1e-198 696.0 492 64.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.3e-195 684.1 500 69.2
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.5e-188 663.3 379 83.9
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 4.9e-187 658.3 533 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.3e-184 650.2 501 62.3
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.5e-175 619.4 346 86.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 4.3e-175 618.6 419 74.5
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.3e-168 597.0 344 83.1
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.5e-164 583.6 355 82.5
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.9e-154 550.1 507 57.4
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.8e-153 544.7 356 80.3
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 5.6e-151 538.5 491 51.5
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.5e-143 513.1 285 84.2
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 2.4e-141 506.5 268 86.9
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 3.3e-135 486.1 510 49.4
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 7.6e-132 474.9 275 83.6
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.5e-127 459.9 285 81.4
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.5e-127 459.9 502 48.2
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 7.2e-90 335.5 172 88.4
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.1e-85 321.6 409 41.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 6.6e-59 232.6 317 43.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.9e-58 231.1 405 38.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.3e-50 202.6 104 91.3
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.0e-39 167.9 93 84.9
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.8e-32 144.8 77 87.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.8e-31 139.8 79 81.0
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.2e-23 115.5 68 76.5
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 6.0e-20 103.2 63 73.0
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.5e-15 88.6 72 63.9
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.2e-12 79.0 125 40.0
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 5.6e-10 70.1 48 62.5
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 3.4e-07 60.8 35 74.3


User provided reference genes

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