Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.5e-80 301.6 154 100.0
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.5e-67 259.6 133 99.2
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.7e-67 257.7 132 98.5
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.7e-67 257.7 132 98.5
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.3e-66 256.5 132 97.7
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.2e-66 255.8 131 98.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.8e-66 255.4 132 97.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.8e-66 255.4 132 97.7
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.8e-66 255.4 132 97.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.7e-66 255.0 132 97.7
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 4.9e-66 254.6 132 97.7
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.3e-66 253.8 132 96.2
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.5e-64 248.1 132 93.2
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.5e-64 248.1 132 93.9
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.0e-63 246.9 133 95.5
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.9e-63 245.4 132 92.4
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 4.0e-60 235.0 148 82.4
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 5.2e-60 234.6 132 89.4
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.7e-58 228.4 133 85.7
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 8.3e-58 227.3 132 84.1
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 5.4e-57 224.6 132 83.3
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 5.4e-57 224.6 132 83.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 7.0e-57 224.2 115 97.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 7.0e-57 224.2 132 83.3
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 9.2e-57 223.8 132 84.8
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.6e-56 223.0 132 84.1
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.6e-56 223.0 125 90.4
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.6e-56 223.0 132 84.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 2.0e-56 222.6 132 82.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.0e-56 222.6 132 82.6
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 2.0e-56 222.6 132 82.6
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 3.5e-56 221.9 132 82.6
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 3.5e-56 221.9 132 82.6
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 3.5e-56 221.9 131 81.7
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.6e-56 221.5 132 82.6
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.6e-56 221.5 132 82.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 5.9e-56 221.1 132 81.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 7.8e-56 220.7 114 94.7
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.3e-55 219.9 114 95.6
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.3e-55 219.9 132 81.1
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.3e-55 219.9 133 82.0
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.3e-55 219.9 132 81.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.3e-55 219.9 132 82.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.7e-55 219.5 131 84.7
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.3e-55 219.2 132 82.6
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.3e-55 219.2 132 82.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.9e-55 218.8 133 79.7
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.9e-55 218.8 132 81.1
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.9e-55 218.8 132 82.6
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.9e-55 218.8 132 83.3
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 3.9e-55 218.4 132 82.6
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.9e-55 218.4 132 81.8
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.0e-55 218.0 132 81.8
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 6.6e-55 217.6 131 80.2
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 6.6e-55 217.6 131 80.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.6e-55 217.6 131 80.9
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.6e-55 217.6 131 80.9
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 6.6e-55 217.6 131 80.9
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.6e-55 217.2 132 81.1
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 8.6e-55 217.2 132 81.1
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 8.6e-55 217.2 132 82.6
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-54 216.9 131 80.9
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.1e-54 216.9 132 81.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.9e-54 216.1 132 81.1
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.9e-54 216.1 132 78.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.5e-54 215.7 132 80.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 2.5e-54 215.7 131 78.6
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.5e-54 215.7 132 78.8
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 4.3e-54 214.9 131 80.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.3e-54 214.9 132 78.0
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 5.6e-54 214.5 132 76.5
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 5.6e-54 214.5 132 78.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 7.3e-54 214.2 131 80.9
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 7.3e-54 214.2 132 77.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.2e-53 213.4 132 78.0
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.6e-53 213.0 132 79.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.1e-53 212.6 132 76.5
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.8e-53 212.2 131 80.9
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 3.6e-53 211.8 131 78.6
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.6e-53 211.8 132 78.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.6e-53 211.8 132 79.5
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.6e-53 211.8 132 79.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 4.7e-53 211.5 132 76.5
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.7e-53 211.5 130 78.5
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.8e-52 209.5 132 76.5
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.8e-52 209.5 131 77.9
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.8e-52 209.5 132 79.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 5.2e-52 208.0 145 73.1
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 5.2e-52 208.0 130 77.7
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.2e-52 208.0 132 79.5
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 8.9e-52 207.2 131 77.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.2e-51 206.8 132 75.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.5e-51 206.5 132 78.0
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.6e-51 205.7 149 72.5
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.4e-51 205.3 148 70.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.4e-51 204.9 148 70.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.4e-51 204.9 148 70.9
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 4.4e-51 204.9 132 73.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 4.4e-51 204.9 132 75.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.3e-50 203.4 155 69.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.3e-50 203.4 126 83.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.9e-50 202.2 132 75.8
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.9e-50 202.2 114 86.8
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.9e-50 202.2 122 83.6
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-50 202.2 142 72.5
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-50 201.8 142 72.5
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 4.9e-50 201.4 114 86.8
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 8.3e-50 200.7 159 64.8
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.4e-49 199.9 115 85.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.4e-49 199.1 131 74.0
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.2e-48 196.8 122 80.3
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.2e-48 196.8 113 84.1
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 2.7e-48 195.7 132 69.7
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.5e-48 195.3 124 79.0
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 4.6e-48 194.9 114 84.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 7.8e-48 194.1 121 79.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-47 193.7 121 78.5
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-47 193.7 121 78.5
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.3e-47 192.6 121 77.7
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.9e-47 191.8 123 77.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 3.9e-47 191.8 170 60.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 6.6e-47 191.0 114 78.9
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.6e-47 190.7 108 85.2
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 8.6e-47 190.7 114 80.7
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.1e-46 190.3 104 92.3
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.5e-46 189.1 113 82.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 5.6e-46 188.0 122 78.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.6e-45 186.4 132 68.2
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 6.2e-45 184.5 110 81.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.8e-44 183.0 145 69.0
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.8e-44 183.0 131 67.2
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-43 179.9 114 78.1
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.5e-43 179.9 130 67.7
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.7e-42 175.3 131 63.4
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.9e-42 174.9 125 68.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.9e-41 172.9 131 63.4
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.2e-41 172.2 203 50.2
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.5e-38 163.3 91 84.6
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-38 162.9 106 77.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 4.0e-36 155.2 90 82.2
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 5.2e-36 154.8 89 83.1
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-35 153.3 94 83.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.4e-35 152.1 125 65.6
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.3e-34 150.2 88 78.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.3e-31 140.2 101 71.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 3.9e-31 138.7 83 83.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.5e-30 136.0 82 84.1
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.8e-28 129.8 112 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.9e-26 121.7 87 65.5
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.4e-26 121.3 74 82.4
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.4e-25 118.2 93 60.2
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.4e-25 118.2 73 82.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.9e-22 109.8 64 85.9
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-22 109.4 102 57.8
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.1e-20 102.4 65 83.1
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 5.8e-19 98.2 135 40.0
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 4.9e-18 95.1 55 80.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.5e-14 83.6 125 37.6
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 9.6e-14 80.9 108 50.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.6e-13 79.0 49 79.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.6e-13 79.0 49 79.6
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 1.7e-10 70.1 112 33.9
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.5e-08 62.4 43 72.1


User provided reference genes

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