Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 1.7e-247 859.0 461 100.0
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 5.2e-241 837.4 461 97.2
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 4.2e-238 827.8 461 96.3
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 7.8e-237 823.5 461 94.1
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 4.0e-233 811.2 461 92.2
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 2.0e-232 808.9 461 92.6
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 4.6e-229 797.7 462 90.5
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 2.3e-228 795.4 461 90.0
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 8.1e-226 786.9 461 89.8
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 8.1e-226 786.9 461 89.8
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 8.1e-226 786.9 461 89.8
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 3.4e-224 781.6 462 89.2
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 7.6e-224 780.4 462 89.2
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 6.9e-193 677.6 464 74.1
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 1.2e-192 676.8 464 73.1
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 5.9e-192 674.5 464 73.9
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 5.0e-191 671.4 464 73.9
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 5.5e-190 667.9 463 74.1
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 2.7e-189 665.6 463 73.0
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 2.7e-189 665.6 463 73.0
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 4.7e-189 664.8 464 75.2
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 1.4e-188 663.3 464 73.9
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.8e-188 662.9 462 73.8
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.8e-188 662.9 464 75.9
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.8e-188 662.9 464 76.1
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 3.0e-188 662.1 464 74.1
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.5e-187 659.8 464 73.7
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 2.6e-187 659.1 463 74.7
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 4.4e-187 658.3 465 75.3
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 5.7e-187 657.9 464 71.6
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 9.7e-187 657.1 462 71.4
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 2.8e-186 655.6 468 73.9
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 2.8e-186 655.6 462 74.5
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 4.8e-186 654.8 416 77.9
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 4.8e-186 654.8 462 71.0
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 8.2e-186 654.1 461 71.8
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.1e-185 653.7 464 75.4
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.4e-185 653.3 465 73.3
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.8e-185 652.9 464 71.3
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 1.8e-185 652.9 464 71.3
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 1.8e-185 652.9 462 71.6
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 4.1e-185 651.7 464 73.3
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 4.1e-185 651.7 464 71.6
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 9.1e-185 650.6 464 72.6
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 9.1e-185 650.6 464 74.4
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 9.1e-185 650.6 461 72.5
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 3.5e-184 648.7 464 72.0
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 3.5e-184 648.7 468 73.7
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 5.9e-184 647.9 462 71.9
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 7.7e-184 647.5 464 71.1
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.3e-183 646.7 461 70.7
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 2.2e-183 646.0 465 75.1
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 5.0e-183 644.8 452 76.1
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 8.5e-183 644.0 461 71.8
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 1.5e-182 643.3 464 71.3
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 1.5e-182 643.3 469 73.6
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 1.9e-182 642.9 462 73.2
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 2.5e-182 642.5 464 73.3
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 2.1e-181 639.4 465 74.4
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 2.1e-181 639.4 464 72.0
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 3.0e-180 635.6 456 71.7
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 4.0e-180 635.2 465 73.1
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.7e-180 634.4 489 68.7
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.1e-179 633.6 468 72.4
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 7.5e-179 630.9 463 70.2
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 1.3e-178 630.2 467 70.7
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 1.7e-178 629.8 479 67.0
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.2e-178 629.4 463 70.0
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.8e-178 629.0 464 70.0
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.7e-178 628.6 469 72.5
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.1e-177 625.2 464 70.7
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 5.3e-177 624.8 462 69.7
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 7.0e-177 624.4 425 74.1
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.6e-176 623.2 425 73.9
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 7.7e-176 620.9 443 73.1
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 1.0e-175 620.5 465 69.7
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 5.0e-175 618.2 510 64.3
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 5.5e-174 614.8 467 69.6
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 9.4e-174 614.0 463 69.1
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 6.1e-173 611.3 487 67.1
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.0e-172 610.5 468 67.7
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 3.0e-172 609.0 465 69.7
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 2.6e-171 605.9 463 68.3
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 3.4e-171 605.5 467 67.7
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 4.4e-171 605.1 461 70.1
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 1.3e-170 603.6 469 67.8
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.2e-170 602.8 464 67.9
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.7e-170 602.1 492 65.9
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 8.3e-170 600.9 466 71.0
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.1e-169 600.5 461 69.6
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.8e-169 599.7 417 71.5
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 1.8e-169 599.7 463 69.1
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 2.4e-169 599.4 469 68.9
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 3.1e-169 599.0 464 69.8
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 9.1e-169 597.4 462 66.0
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 9.1e-169 597.4 469 68.7
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.6e-168 596.7 403 72.7
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.9e-167 592.4 466 70.8
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 6.5e-167 591.3 460 66.7
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 6.5e-167 591.3 468 67.9
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 4.2e-166 588.6 470 67.0
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 1.0e-164 583.9 418 70.6
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 4.9e-162 575.1 398 72.4
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 6.3e-162 574.7 456 67.3
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 1.7e-159 566.6 458 64.4
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 1.6e-157 560.1 462 64.9
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 4.4e-155 552.0 396 70.7
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 7.5e-155 551.2 415 69.4
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 1.3e-154 550.4 453 63.4
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.7e-154 550.1 416 64.9
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 3.0e-135 486.1 380 68.4
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 7.6e-131 471.5 322 73.3
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 2.4e-129 466.5 399 58.4
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 2.5e-126 456.4 420 55.5
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 2.1e-125 453.4 405 55.1
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.1e-110 404.4 423 52.0
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.2e-99 367.9 306 60.1
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 4.6e-96 355.9 403 49.6
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 6.3e-93 345.5 261 73.6
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 2.4e-92 343.6 543 37.8
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 4.1e-92 342.8 270 73.0
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 4.4e-78 296.2 255 69.4
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 5.7e-78 295.8 255 69.4
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 4.7e-72 276.2 188 74.5
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 6.1e-48 196.1 207 55.6
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 3.0e-47 193.7 148 71.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 7.0e-44 182.6 145 65.5
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 8.0e-40 169.1 125 72.0
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.6e-38 164.1 162 58.6
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 5.0e-34 149.8 122 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 4.3e-33 146.7 376 30.1
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 5.0e-26 123.2 60 98.3
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 3.6e-16 90.5 73 68.5
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.4e-15 88.6 57 73.7
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 2.0e-14 84.7 59 66.1
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 4.4e-06 57.0 65 49.2


User provided reference genes

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