Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 3.4e-151 538.5 314 100.0
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 2.5e-138 495.7 322 89.1
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 5.9e-127 458.0 313 87.2
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 1.5e-125 453.4 319 80.9
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 4.7e-124 448.4 314 83.8
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 1.0e-123 447.2 313 83.4
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 1.0e-115 420.6 314 78.0
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 1.0e-115 420.6 314 78.0
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 5.2e-115 418.3 314 77.7
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 3.4e-114 415.6 230 93.0
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 4.1e-112 408.7 230 88.7
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 1.2e-111 407.1 230 92.2
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 2.7e-111 406.0 230 91.7
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 2.7e-108 396.0 240 85.4
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 2.3e-94 349.7 239 74.5
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 9.5e-77 291.2 252 61.1
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 9.5e-77 291.2 179 76.5
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 1.2e-76 290.8 243 62.6
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 2.3e-75 286.6 237 64.6
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 2.3e-75 286.6 192 74.5
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 6.8e-75 285.0 315 55.9
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 1.2e-74 284.3 252 59.9
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 1.5e-74 283.9 173 78.0
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 2.0e-74 283.5 254 59.4
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 2.0e-74 283.5 181 75.7
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 3.4e-74 282.7 176 75.6
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 4.4e-74 282.3 179 75.4
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 4.4e-74 282.3 179 73.7
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 5.8e-74 282.0 247 59.5
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 1.7e-73 280.4 176 72.2
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 3.7e-73 279.3 236 63.6
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 3.7e-73 279.3 181 74.0
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 1.1e-72 277.7 254 56.3
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 1.4e-72 277.3 186 71.5
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 1.4e-72 277.3 244 59.4
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 1.4e-72 277.3 179 72.6
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 5.4e-72 275.4 174 74.1
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 5.4e-72 275.4 181 73.5
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 7.1e-72 275.0 188 70.7
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 9.2e-72 274.6 203 66.0
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 1.6e-71 273.9 181 71.3
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 1.6e-71 273.9 173 72.8
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 1.6e-71 273.9 180 71.1
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 2.1e-71 273.5 181 71.3
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 2.7e-71 273.1 253 55.7
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 3.5e-71 272.7 181 70.7
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 3.5e-71 272.7 279 52.7
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 4.6e-71 272.3 181 71.8
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 7.8e-71 271.6 202 64.9
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 1.3e-70 270.8 179 70.9
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 2.3e-70 270.0 178 70.8
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 2.3e-70 270.0 179 70.9
CAN.G281.10 Capsicum annuum HOM05D006827 ORTHO05D008725 3.0e-70 269.6 188 69.7
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 5.1e-70 268.9 172 74.4
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 6.6e-70 268.5 173 74.0
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 8.6e-70 268.1 176 70.5
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 8.6e-70 268.1 176 70.5
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 1.5e-69 267.3 174 71.8
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 3.3e-69 266.2 198 66.7
PGR031G1277 Punica granatum HOM05D006827 ORTHO05D008725 9.6e-69 264.6 173 70.5
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 1.2e-68 264.2 182 68.7
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 1.2e-68 264.2 171 74.9
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 1.6e-68 263.8 202 64.9
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 1.6e-68 263.8 172 73.8
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 2.1e-68 263.5 173 72.3
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 2.1e-68 263.5 258 55.0
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 3.6e-68 262.7 172 69.2
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 4.7e-68 262.3 246 58.1
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 6.2e-68 261.9 180 69.4
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 8.1e-68 261.5 180 67.8
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 8.1e-68 261.5 179 67.0
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 8.1e-68 261.5 189 67.2
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 1.4e-67 260.8 173 69.9
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 1.8e-67 260.4 179 68.2
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 5.2e-67 258.8 171 70.2
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 6.8e-67 258.5 180 66.1
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 1.2e-66 257.7 181 69.1
Aqoxy2G02656 Aquilegia oxysepala HOM05D006827 ORTHO05D008725 1.5e-66 257.3 163 73.0
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 2.6e-66 256.5 170 71.2
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 4.4e-66 255.8 172 68.0
SGA_v2.0_scaffold227G43227 Striga asiatica HOM05D006827 ORTHO05D008725 4.4e-66 255.8 175 70.9
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 4.4e-66 255.8 195 63.6
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 7.6e-66 255.0 179 65.9
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 9.9e-66 254.6 209 58.9
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 1.7e-65 253.8 181 67.4
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 2.9e-65 253.1 186 64.5
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 1.4e-64 250.8 241 58.5
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 5.4e-64 248.8 175 67.4
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 1.2e-63 247.7 231 55.0
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 2.7e-63 246.5 241 54.4
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 4.6e-63 245.7 249 54.2
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 2.5e-61 240.0 175 66.9
Psat1g161800 Pisum sativum HOM05D006827 ORTHO05D008725 3.3e-61 239.6 162 67.9
Rhsim04G0242100 Rhododendron simsii HOM05D006827 ORTHO05D008725 5.6e-61 238.8 163 70.6
Peaxi162Scf00228g00735 Petunia axillaris HOM05D006827 ORTHO05D008725 8.1e-60 235.0 214 62.6
Lalb_Chr18g0058551 Lupinus albus HOM05D006827 ORTHO05D008725 2.4e-59 233.4 163 65.6
CsaV3_UNG230110 Cucumis sativus L. HOM05D006827 ORTHO05D008725 4.6e-55 219.2 166 65.1
vmacro07963 Vaccinium macrocarpon HOM05D006827 ORTHO05D008725 7.4e-53 211.8 150 68.0
CsaV3_6G028440 Cucumis sativus L. HOM05D006827 ORTHO05D008725 2.9e-49 199.9 253 47.0
Atru.chr4.3069 Acer truncatum HOM05D006827 ORTHO05D008725 7.1e-48 195.3 118 77.1
BcaC05g28821 Brassica carinata HOM05D006827 ORTHO05D023991 9.3e-48 194.9 323 44.6
MD16G1149200 Malus domestica HOM05D006827 ORTHO05D008725 5.6e-45 185.7 120 70.8
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 2.1e-44 183.7 112 75.9
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 7.9e-39 165.2 160 56.9
C05p49280 Brassica napus HOM05D006827 ORTHO05D008725 1.0e-38 164.9 145 68.3
Cpa.g.sc9.7 Carica papaya HOM05D001281 ORTHO05D008725 1.5e-34 151.0 154 58.4
SEGI_22692 Sequoiadendron giganteum HOM05D006827 ORTHO05D008725 1.7e-33 147.5 109 62.4
Pp3c14_11410 Physcomitrium patens HOM05D006827 ORTHO05D008725 1.1e-32 144.8 155 46.5
Pp3c14_11414 Physcomitrium patens HOM05D006827 ORTHO05D008725 1.1e-32 144.8 155 46.5
Mapoly0005s0049 Marchantia polymorpha HOM05D006827 ORTHO05D008725 5.5e-32 142.5 154 46.1
CBR_g38487 Chara braunii HOM05D006827 ORTHO05D008725 9.0e-27 125.2 146 43.8
SMO351G0308 Selaginella moellendorffii HOM05D006827 ORTHO05D008725 1.3e-25 121.3 98 53.1
AUR62032776 Chenopodium quinoa HOM05D006827 ORTHO05D008725 1.1e-24 118.2 87 60.9
A05p32600 Brassica napus HOM05D006827 ORTHO05D008725 1.6e-23 114.4 81 75.3
BraA05t22084Z Brassica rapa HOM05D006827 ORTHO05D008725 1.6e-23 114.4 81 75.3
Psat7g189800 Pisum sativum HOM05D006827 ORTHO05D008725 1.2e-18 98.2 71 63.4
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 5.2e-14 82.8 101 41.6
Hma1.2p1_0013F.1_g008240 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 5.7e-13 79.3 59 61.0
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 6.3e-12 75.9 123 35.8
BcaB06g25810 Brassica carinata HOM05D006827 ORTHO05D023991 2.9e-09 67.0 77 59.7
Psat4g040600 Pisum sativum HOM05D006827 ORTHO05D008725 8.5e-09 65.5 148 31.1
BolC5t33670H Brassica oleracea HOM05D064981 ORTHO05D023991 5.5e-08 62.8 110 40.0
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 1.6e-07 61.2 104 33.7
C05p49290 Brassica napus HOM05D064981 ORTHO05D023991 4.0e-06 56.6 106 39.6


User provided reference genes

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