Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29990 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.5e-173 612.8 335 100.0
AT3G17010 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.5e-131 472.6 336 74.7
Sp3g15230 Schrenkiella parvula HOM05D007600 ORTHO05D009132 9.8e-104 380.9 326 69.3
Thhalv10015617m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.8e-97 360.1 325 60.9
Thhalv10022138m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 3.0e-97 359.4 325 66.5
Carub.0003s1676 Capsella rubella HOM05D007600 ORTHO05D009132 9.8e-96 354.4 303 64.7
BcaB04g18922 Brassica carinata HOM05D007600 ORTHO05D009132 7.0e-94 348.2 338 57.1
CARHR092260 Cardamine hirsuta HOM05D007600 ORTHO05D009132 1.2e-90 337.4 339 58.7
A05p32720 Brassica napus HOM05D007600 ORTHO05D009132 1.4e-86 323.9 319 55.8
BraA05t22094Z Brassica rapa HOM05D007600 ORTHO05D009132 1.0e-84 317.8 319 55.2
BcaB06g25793 Brassica carinata HOM05D007600 ORTHO05D009132 1.9e-83 313.5 328 60.1
A03p40020 Brassica napus HOM05D007600 ORTHO05D009132 3.4e-80 302.8 327 52.6
BolC5t33688H Brassica oleracea HOM05D007600 ORTHO05D009132 9.2e-78 294.7 319 58.6
C03p48550 Brassica napus HOM05D007600 ORTHO05D009132 2.0e-77 293.5 323 57.0
C05p49420 Brassica napus HOM05D007600 ORTHO05D009132 4.6e-77 292.4 317 57.4
BraA03t13150Z Brassica rapa HOM05D007600 ORTHO05D009132 8.6e-76 288.1 327 52.3
BolC3t17133H Brassica oleracea HOM05D007600 ORTHO05D009132 1.9e-75 287.0 350 48.9
BcaC01g03795 Brassica carinata HOM05D007600 ORTHO05D009132 1.7e-71 273.9 330 53.0
A08p33850 Brassica napus HOM05D007600 ORTHO05D009132 1.7e-71 273.9 328 48.8
BraA08t35300Z Brassica rapa HOM05D007600 ORTHO05D009132 1.7e-71 273.9 328 48.8
C03p48540 Brassica napus HOM05D007600 ORTHO05D009132 1.9e-70 270.4 321 47.4
BcaB06g25788 Brassica carinata HOM05D007600 ORTHO05D009132 3.2e-70 269.6 321 47.4
BolC3t17132H Brassica oleracea HOM05D007600 ORTHO05D009132 7.1e-70 268.5 321 47.0
BcaC01g03796 Brassica carinata HOM05D007600 ORTHO05D009132 9.2e-70 268.1 321 47.0
A03p40010 Brassica napus HOM05D007600 ORTHO05D009132 1.6e-69 267.3 321 47.7
BcaC05g28837 Brassica carinata HOM05D007600 ORTHO05D009132 6.8e-65 251.9 287 56.8
BcaC07g38580 Brassica carinata HOM05D007600 ORTHO05D009132 1.2e-64 251.1 311 46.0
BcaB04g18921 Brassica carinata HOM05D007600 ORTHO05D009132 4.4e-64 249.2 328 47.3
Thhalv10015705m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 3.8e-63 246.1 328 43.3
BraA04t18175Z Brassica rapa HOM05D007600 ORTHO05D009132 2.4e-62 243.4 326 46.3
AT5G18000 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 9.2e-62 241.5 323 42.7
BcaC07g38617 Brassica carinata HOM05D007600 ORTHO05D009132 9.2e-62 241.5 309 45.3
Sp6g26290 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.2e-61 241.1 323 46.7
BolC4t27889H Brassica oleracea HOM05D007600 ORTHO05D009132 1.0e-60 238.0 315 46.3
AL6G29100 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 3.9e-60 236.1 324 43.5
BraA03t13149Z Brassica rapa HOM05D007600 ORTHO05D009132 5.6e-59 232.3 320 43.4
BolC2t06864H Brassica oleracea HOM05D007600 ORTHO05D009132 1.6e-58 230.7 327 46.2
Sp6g26220 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.1e-57 228.0 327 40.1
AL6G29290 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.2e-56 224.6 320 38.8
CARHR195070 Cardamine hirsuta HOM05D007600 ORTHO05D009132 1.2e-56 224.6 325 39.7
BcaC03g13563 Brassica carinata HOM05D007600 ORTHO05D009132 2.0e-56 223.8 324 46.0
C02p09570 Brassica napus HOM05D007600 ORTHO05D009132 2.0e-56 223.8 325 43.1
Thhalv10014143m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.2e-55 220.3 339 41.3
A02p04630 Brassica napus HOM05D007600 ORTHO05D009132 2.9e-55 219.9 327 45.6
BraA02t05424Z Brassica rapa HOM05D007600 ORTHO05D009132 8.4e-55 218.4 320 46.2
AT5G18090 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.2e-53 214.5 320 40.0
Carub.0006s1638 Capsella rubella HOM05D007600 ORTHO05D009132 2.1e-53 213.8 334 38.0
BcaB05g23317 Brassica carinata HOM05D007600 ORTHO05D009132 4.6e-53 212.6 333 42.0
Sp1g09320 Schrenkiella parvula HOM05D007600 ORTHO05D009132 5.1e-52 209.1 191 60.2
BolC8t49021H Brassica oleracea HOM05D007600 ORTHO05D009132 8.7e-52 208.4 261 47.9
Aa31LG8G13300 Aethionema arabicum HOM05D007600 ORTHO05D009132 1.1e-51 208.0 318 40.9
CARHR194980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 1.9e-51 207.2 318 37.4
AT2G35310 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 6.2e-50 202.2 320 38.8
AL457U10020 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.1e-49 201.4 318 39.0
AT5G09780 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.8e-49 200.7 311 43.4
BcaB08g36708 Brassica carinata HOM05D007600 ORTHO05D009132 3.1e-49 199.9 334 35.0
AL6G20180 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 4.0e-49 199.5 319 38.2
Carub.0003s2950 Capsella rubella HOM05D007600 ORTHO05D009132 4.0e-49 199.5 324 39.2
C09p58890 Brassica napus HOM05D007600 ORTHO05D009132 2.0e-48 197.2 314 36.6
AL3G52300 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 5.8e-48 195.7 324 38.0
BcaC04g18726 Brassica carinata HOM05D007600 ORTHO05D009132 5.8e-48 195.7 315 36.8
BolC9t58734H Brassica oleracea HOM05D007600 ORTHO05D009132 5.8e-48 195.7 315 36.8
AT2G16210 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 6.4e-47 192.2 323 37.2
A10p21410 Brassica napus HOM05D007600 ORTHO05D009132 2.4e-46 190.3 312 35.6
Carub.0006s0819 Capsella rubella HOM05D007600 ORTHO05D009132 1.8e-44 184.1 324 35.8
BraA10t44204Z Brassica rapa HOM05D007600 ORTHO05D009132 1.9e-43 180.6 321 37.4
Aa31LG11G11510 Aethionema arabicum HOM05D007600 ORTHO05D009132 4.3e-43 179.5 286 37.4
BcaB06g25789 Brassica carinata HOM05D007600 ORTHO05D009132 4.8e-42 176.0 207 47.8
CARHR291980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 1.4e-41 174.5 335 36.4
BcaB04g18919 Brassica carinata HOM05D007600 ORTHO05D009132 3.2e-38 163.3 118 61.0
C08p13860 Brassica napus HOM05D007600 ORTHO05D009132 9.3e-38 161.8 159 55.3
CARHR106010 Cardamine hirsuta HOM05D007600 ORTHO05D009132 8.7e-36 155.2 309 33.7
Carub.0006s1619 Capsella rubella HOM05D007600 ORTHO05D009132 3.3e-35 153.3 242 40.9
THA.LOC104819596 Tarenaya hassleriana HOM05D007600 ORTHO05D009132 5.6e-35 152.5 320 30.3
A04p26690 Brassica napus HOM05D007600 ORTHO05D009132 1.3e-34 151.4 304 31.6
Thhalv10023054m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.8e-33 147.5 290 32.4
C04p64110 Brassica napus HOM05D007600 ORTHO05D009132 4.0e-33 146.4 302 30.8
A04p33230 Brassica napus HOM05D007600 ORTHO05D009132 6.9e-33 145.6 314 31.2
C04p70920 Brassica napus HOM05D007600 ORTHO05D009132 1.2e-32 144.8 314 31.5
BolC4t28592H Brassica oleracea HOM05D007600 ORTHO05D009132 1.2e-32 144.8 314 31.5
BcaC02g07741 Brassica carinata HOM05D007600 ORTHO05D009132 5.8e-32 142.5 118 54.2
BraA04t18782Z Brassica rapa HOM05D007600 ORTHO05D009132 2.9e-31 140.2 314 31.2
Thhalv10022780m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 5.5e-30 136.0 350 30.0
Thhalv10001785m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 8.7e-28 128.6 317 36.3
Sp4g26250 Schrenkiella parvula HOM05D007600 ORTHO05D009132 3.3e-19 100.1 244 32.4
BcaB06g29362 Brassica carinata HOM05D007600 ORTHO05D009132 1.1e-17 95.1 276 30.1
AT5G46915 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 9.1e-17 92.0 306 31.0
BcaC02g07740 Brassica carinata HOM05D007600 ORTHO05D009132 2.0e-16 90.9 84 52.4
Duzib248G0282 Durio zibethinus HOM05D000823 ORTHO05D009132 5.0e-15 86.3 297 26.3
CARHR037480 Cardamine hirsuta HOM05D007600 ORTHO05D009132 6.5e-15 85.9 235 32.3
BolC9t57576H Brassica oleracea HOM05D007600 ORTHO05D009132 1.1e-14 85.1 248 29.4
GSVIVG01031850001 Vitis vinifera HOM05D000823 ORTHO05D009132 7.2e-14 82.4 275 26.2
Eucgr.I01210 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.4e-12 78.2 310 23.9
Thecc.02G093100 Theobroma cacao HOM05D000823 ORTHO05D000088 2.3e-12 77.4 268 26.1
Actinidia27929 Actinidia chinensis HOM05D000823 ORTHO05D009132 9.7e-11 72.0 78 42.3
Eucgr.D00268 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.7e-10 71.2 306 24.8
Sp3g16060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 6.3e-10 69.3 107 30.8
Aqoxy1G00852 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.1e-09 68.6 298 26.2
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.4e-09 68.2 305 23.3
Eucgr.D00269 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.4e-09 67.4 306 24.2
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 4.1e-09 66.6 133 29.3
BcaC01g03721 Brassica carinata HOM05D008662 ORTHO05D010843 4.1e-09 66.6 109 29.4
A06p36170 Brassica napus HOM05D008662 ORTHO05D010843 5.3e-09 66.2 85 35.3
C03p49300 Brassica napus HOM05D008662 ORTHO05D010843 5.3e-09 66.2 144 29.2
BolC3t17219H Brassica oleracea HOM05D008662 ORTHO05D010843 5.3e-09 66.2 109 29.4
FAN27G1325 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.3e-09 66.2 266 22.6
FAN23G1978 Fragaria x ananassa HOM05D000823 ORTHO05D009132 7.0e-09 65.9 303 25.1
Gohir.D02G212900 Gossypium hirsutum HOM05D007600 ORTHO05D009132 9.1e-09 65.5 249 23.7
BraA06t26539Z Brassica rapa HOM05D008662 ORTHO05D010843 1.2e-08 65.1 65 38.5
MBI16_g19885_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 1.2e-08 65.1 289 23.2
BcaB04g18973 Brassica carinata HOM05D008662 ORTHO05D010843 2.0e-08 64.3 128 28.1
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 2.0e-08 64.3 276 21.7
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 2.0e-08 64.3 304 23.7
Sp2g22060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 2.0e-08 64.3 86 31.4
A03p40460 Brassica napus HOM05D008662 ORTHO05D010843 2.6e-08 63.9 162 26.5
BraA03t13204Z Brassica rapa HOM05D008662 ORTHO05D010843 2.6e-08 63.9 165 26.7
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 2.6e-08 63.9 319 22.3
TAR376G0237 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.6e-08 63.9 306 23.5
C07p42350 Brassica napus HOM05D008662 ORTHO05D010843 3.4e-08 63.5 80 33.8
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 3.4e-08 63.5 80 33.8
BcaB06g25856 Brassica carinata HOM05D008662 ORTHO05D010843 7.7e-08 62.4 150 28.7
FvH4_2g07300 Fragaria vesca HOM05D000823 ORTHO05D000088 1.3e-07 61.6 262 31.3
FvH4_4g19990 Fragaria vesca HOM05D000823 ORTHO05D009132 1.3e-07 61.6 305 23.3
FAN24G0466 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.3e-07 61.6 262 31.3
TWI79G1075 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.3e-07 61.6 307 22.1
VMungo1127G1459 Vigna mungo HOM05D000823 ORTHO05D000088 1.3e-07 61.6 287 24.0
Actinidia12970 Actinidia chinensis HOM05D000823 ORTHO05D000088 1.7e-07 61.2 101 33.7
Thhalv10021356m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 1.7e-07 61.2 89 29.2
Solyc07g054630.4 Solanum lycopersicum HOM05D000395 ORTHO05D000088 1.7e-07 61.2 89 33.7
TPR.G23993 Trifolium pratense HOM05D010195 ORTHO05D000088 1.7e-07 61.2 94 33.0
FAN07G2326 Fragaria x ananassa HOM05D000823 ORTHO05D009132 2.2e-07 60.8 305 23.0
Aqoxy5G01406 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 2.9e-07 60.5 300 22.3
FAN24G0699 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.9e-07 60.5 116 30.2
Ah.07g198620 Amaranthus hybridus HOM05D000888 ORTHO05D000740 3.8e-07 60.1 118 34.7
BcaC04g20154 Brassica carinata HOM05D007600 ORTHO05D009132 3.8e-07 60.1 244 24.6
A02p39720 Brassica napus HOM05D008662 ORTHO05D010843 3.8e-07 60.1 85 30.6
BraA02t08937Z Brassica rapa HOM05D008662 ORTHO05D010843 3.8e-07 60.1 85 30.6
FAN12G2331 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.8e-07 60.1 305 22.0
BraA09t36259Z Brassica rapa HOM05D008662 ORTHO05D010843 5.0e-07 59.7 66 37.9
C09p47210 Brassica napus HOM05D007600 ORTHO05D009132 6.5e-07 59.3 247 25.5
CANSAT01G0597 Cannabis sativa HOM05D000395 ORTHO05D000088 6.5e-07 59.3 310 22.9
DCAR_029419 Daucus carota HOM05D000823 ORTHO05D000088 6.5e-07 59.3 73 39.7
Lj4C136T19 Lonicera japonica HOM05D000395 ORTHO05D000088 6.5e-07 59.3 322 21.7
Carub.0006s2333 Capsella rubella HOM05D008662 ORTHO05D010843 8.5e-07 58.9 71 31.0
FvH4_2g07230 Fragaria vesca HOM05D000823 ORTHO05D000088 8.5e-07 58.9 55 41.8
Eucgr.I01211 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.1e-06 58.5 295 21.4
AL6G37260 Arabidopsis lyrata HOM05D008662 ORTHO05D010843 1.4e-06 58.2 156 26.9
Sopen07g028530 Solanum pennellii HOM05D000395 ORTHO05D000088 1.4e-06 58.2 89 32.6
FAN19G0591 Fragaria x ananassa HOM05D000823 ORTHO05D009132 1.9e-06 57.8 301 23.6
Solyc08g068540.4 Solanum lycopersicum HOM05D000395 ORTHO05D000088 2.5e-06 57.4 115 30.4
Migut.B01167 Erythranthe guttata HOM05D000823 ORTHO05D000088 3.2e-06 57.0 97 32.0
Lj2A600G55 Lonicera japonica HOM05D000395 ORTHO05D000088 3.2e-06 57.0 252 25.0
Nn7g36387 Nelumbo nucifera HOM05D000823 ORTHO05D000088 3.2e-06 57.0 294 21.4
C02p59500 Brassica napus HOM05D008662 ORTHO05D010843 4.2e-06 56.6 109 28.4
BolC2t12013H Brassica oleracea HOM05D008662 ORTHO05D010843 4.2e-06 56.6 109 28.4
Eucgr.G01240 Eucalyptus grandis HOM05D000395 ORTHO05D000088 4.2e-06 56.6 340 24.1
Thhalv10004752m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 5.5e-06 56.2 106 27.4
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 5.5e-06 56.2 111 29.7
vmacro16013 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 5.5e-06 56.2 297 23.9
VMungo0647G0793 Vigna mungo HOM05D001541 ORTHO05D000088 5.5e-06 56.2 118 28.8
Atru.chr5.2832 Acer truncatum HOM05D000823 ORTHO05D000088 7.2e-06 55.8 110 30.9
Aqoxy214s002 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 7.2e-06 55.8 271 22.5
AT5G25475 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 7.2e-06 55.8 117 28.2
RcHm_v2.0_Chr6g0259781 Rosa chinensis HOM05D000823 ORTHO05D000088 7.2e-06 55.8 107 30.8
AT5G25470 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 9.4e-06 55.5 142 28.2
Phvul.011G050700 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 9.4e-06 55.5 266 24.8


User provided reference genes

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