Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.3e-109 399.8 213 100.0
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 3.5e-99 365.2 211 91.9
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 3.0e-98 362.1 213 91.1
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 6.9e-95 350.9 210 89.0
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 7.6e-94 347.4 211 88.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 7.6e-94 347.4 211 88.6
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 4.9e-93 344.7 213 87.8
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.8e-90 336.3 213 85.4
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 3.0e-90 335.5 213 84.5
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 8.7e-90 334.0 211 84.8
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.1e-89 333.6 211 84.8
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.5e-89 333.2 211 84.4
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.5e-89 333.2 211 84.4
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 9.6e-89 330.5 210 86.2
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 1.6e-88 329.7 210 84.8
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 1.4e-87 326.6 211 84.4
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 1.8e-87 326.2 211 84.4
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 9.0e-87 323.9 204 84.3
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 5.1e-74 281.6 208 73.6
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 8.2e-64 247.7 172 73.3
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 1.0e-45 187.6 183 53.0
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 5.0e-45 185.3 183 52.5
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 1.9e-44 183.3 168 56.0
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.5e-44 183.0 170 52.9
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.5e-44 183.0 169 54.4
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.2e-44 182.2 170 52.4
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 9.4e-44 181.0 171 57.3
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 1.2e-43 180.6 170 51.8
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.2e-43 180.6 171 55.0
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 1.6e-43 180.3 169 55.0
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.1e-43 179.9 208 46.2
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 2.7e-43 179.5 170 52.4
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 3.6e-43 179.1 169 55.0
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 1.8e-42 176.8 178 50.6
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.8e-42 176.8 204 49.0
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 2.3e-42 176.4 166 54.8
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.3e-42 176.4 172 51.7
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 3.0e-42 176.0 169 52.7
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 6.8e-42 174.9 209 46.9
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 6.8e-42 174.9 172 51.7
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 6.8e-42 174.9 170 52.4
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 8.8e-42 174.5 170 51.8
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.2e-41 174.1 206 45.6
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 2.0e-41 173.3 170 51.2
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 2.6e-41 172.9 168 53.0
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 3.4e-41 172.6 177 50.3
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 3.4e-41 172.6 166 54.2
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 5.7e-41 171.8 172 49.4
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 7.5e-41 171.4 172 51.2
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 9.8e-41 171.0 169 53.3
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 9.8e-41 171.0 169 51.5
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.7e-40 170.2 172 51.2
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.7e-40 170.2 168 52.4
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 2.2e-40 169.9 168 52.4
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 3.7e-40 169.1 169 50.3
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 4.8e-40 168.7 210 45.7
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.8e-40 168.7 169 52.7
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 4.8e-40 168.7 169 52.7
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 4.8e-40 168.7 170 49.4
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 8.3e-40 167.9 174 51.1
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 8.3e-40 167.9 170 50.6
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 8.3e-40 167.9 171 51.5
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 1.1e-39 167.5 178 51.1
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 1.1e-39 167.5 169 50.9
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.4e-39 167.2 169 50.9
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 1.8e-39 166.8 169 50.3
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 1.8e-39 166.8 170 48.8
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 1.8e-39 166.8 220 46.4
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 2.4e-39 166.4 171 50.9
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.1e-39 166.0 169 49.1
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 3.1e-39 166.0 169 49.7
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 4.1e-39 165.6 169 52.1
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 4.1e-39 165.6 169 52.1
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 5.4e-39 165.2 209 43.1
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 7.0e-39 164.9 168 50.0
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 9.1e-39 164.5 169 48.5
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 9.1e-39 164.5 168 50.6
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.6e-38 163.7 169 49.1
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 2.0e-38 163.3 168 50.6
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 3.5e-38 162.5 212 43.4
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 5.9e-38 161.8 168 48.8
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 7.7e-38 161.4 165 51.5
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 1.0e-37 161.0 203 43.3
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.7e-37 160.2 165 51.5
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 1.7e-37 160.2 169 47.3
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 2.2e-37 159.8 192 46.9
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 2.9e-37 159.5 159 52.2
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.9e-37 159.5 147 54.4
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 3.8e-37 159.1 167 46.7
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 3.8e-37 159.1 208 40.9
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 5.0e-37 158.7 168 48.2
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 8.5e-37 157.9 182 47.3
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 8.5e-37 157.9 165 51.5
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.1e-36 157.5 161 50.3
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.1e-36 157.5 145 55.9
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 1.5e-36 157.1 175 48.0
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 2.5e-36 156.4 198 40.9
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 3.2e-36 156.0 169 46.2
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 3.2e-36 156.0 185 45.4
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 9.4e-36 154.5 167 44.9
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 1.2e-35 154.1 177 45.2
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 1.2e-35 154.1 215 41.4
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 1.6e-35 153.7 161 46.6
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 1.6e-35 153.7 161 46.6
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 1.6e-35 153.7 169 45.6
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 2.7e-35 152.9 182 44.5
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 4.7e-35 152.1 170 47.6
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 4.7e-35 152.1 168 48.2
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 1.4e-34 150.6 169 49.1
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.4e-34 150.6 168 47.0
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 2.3e-34 149.8 161 46.6
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 4.0e-34 149.1 168 47.6
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 4.0e-34 149.1 197 42.6
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 8.8e-34 147.9 197 43.7
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 3.4e-33 146.0 130 55.4
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 5.7e-33 145.2 170 46.5
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 7.5e-33 144.8 165 46.7
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 1.3e-32 144.1 203 41.4
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 1.1e-31 141.0 160 46.9
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.1e-31 141.0 167 44.3
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 1.8e-31 140.2 210 39.0
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 2.4e-31 139.8 169 45.0
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 3.1e-31 139.4 179 48.6
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.6e-30 137.1 160 46.9
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 8.6e-29 131.3 116 59.5
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.1e-28 131.0 170 42.9
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 4.0e-26 122.5 118 51.7
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.0e-25 120.2 110 53.6
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 3.2e-23 112.8 207 34.8
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 3.9e-21 105.9 169 39.6
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 9.8e-17 91.3 100 46.0
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 2.4e-15 86.7 98 42.9
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.6e-14 84.0 70 54.3
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 3.0e-13 79.7 99 41.4
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 9.5e-12 74.7 64 54.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.6e-11 73.9 77 48.1
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 5.2e-10 68.9 96 40.6
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 9.8e-09 64.7 68 47.1
Glyma.17G007400 Glycine max HOM05D002232 ORTHO05D002323 4.9e-08 62.4 169 29.6
SMO367G0421 Selaginella moellendorffii HOM05D002464 ORTHO05D002530 4.9e-08 62.4 114 33.3
Glyma.07G266800 Glycine max HOM05D002232 ORTHO05D002323 6.4e-08 62.0 169 30.2
Phvul.003G085300 Phaseolus vulgaris HOM05D002232 ORTHO05D002323 8.3e-08 61.6 169 29.0
CiPaw.04G002500 Carya illinoinensis HOM05D003184 ORTHO05D000394 5.4e-07 58.9 167 30.5
CiPaw.01G152600 Carya illinoinensis HOM05D001151 ORTHO05D001504 9.2e-07 58.2 162 29.6
SMO302G0046 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 9.2e-07 58.2 167 25.1
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.2e-06 57.8 183 26.8
Lj6A670T85 Lonicera japonica HOM05D001151 ORTHO05D001504 1.6e-06 57.4 164 28.7
HanXRQChr03g0080171 Helianthus annuus HOM05D001151 ORTHO05D001504 2.1e-06 57.0 180 28.3
Actinidia14319 Actinidia chinensis HOM05D001151 ORTHO05D001504 3.5e-06 56.2 169 33.1
Cpa.g.sc12.294 Carica papaya HOM05D002464 ORTHO05D002530 4.6e-06 55.8 160 29.4
Lsat_1_v5_gn_5_50201 Lactuca sativa HOM05D001151 ORTHO05D001504 4.6e-06 55.8 161 29.2
SMO164G0247 Selaginella moellendorffii HOM05D000085 ORTHO05D002323 4.6e-06 55.8 167 24.6
HanXRQChr13g0410881 Helianthus annuus HOM05D001151 ORTHO05D001504 6.0e-06 55.5 166 30.1
Actinidia00049 Actinidia chinensis HOM05D001151 ORTHO05D001504 7.8e-06 55.1 170 31.8
Hma1.2p1_0078F.1_g040790 Hydrangea macrophylla HOM05D001151 ORTHO05D001504 7.8e-06 55.1 164 31.1


User provided reference genes

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