Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29040 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 1.6e-58 229.2 116 100.0
CARHR158320 Cardamine hirsuta HOM05D006749 ORTHO05D008352 3.2e-30 135.2 102 63.7
Thhalv10020273m.g Eutrema salsugineum HOM05D006749 ORTHO05D008352 2.9e-23 112.1 103 56.3
Carub.0003s1574 Capsella rubella HOM05D006749 ORTHO05D008352 5.0e-23 111.3 103 56.3
BcaC01g03842 Brassica carinata HOM05D006749 ORTHO05D008352 6.5e-23 110.9 103 56.3
C03p48040 Brassica napus HOM05D006749 ORTHO05D008352 6.5e-23 110.9 103 56.3
BolC3t17083H Brassica oleracea HOM05D006749 ORTHO05D008352 6.5e-23 110.9 103 56.3
Sp3g14360 Schrenkiella parvula HOM05D006749 ORTHO05D008352 6.5e-23 110.9 103 56.3
BraA03t13111Z Brassica rapa HOM05D006749 ORTHO05D008352 8.5e-23 110.5 103 55.3
AT3G16010 Arabidopsis thaliana HOM05D006749 ORTHO05D008352 1.5e-22 109.8 103 55.3
AL3G28660 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 1.9e-22 109.4 103 55.3
A03p39640 Brassica napus HOM05D006749 ORTHO05D008352 2.5e-22 109.0 103 54.4
Aa31LG8G3180 Aethionema arabicum HOM05D006749 ORTHO05D008352 4.2e-22 108.2 103 53.4
BcaB04g18873 Brassica carinata HOM05D006749 ORTHO05D008352 4.2e-22 108.2 103 55.3
CARHR091140 Cardamine hirsuta HOM05D006749 ORTHO05D008352 5.5e-22 107.8 103 54.4
THA.LOC104817996 Tarenaya hassleriana HOM05D006749 ORTHO05D008352 1.2e-21 106.7 103 52.4
Lj3g0002516 Lotus japonicus HOM05D006749 ORTHO05D008352 4.7e-21 104.8 103 51.5
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 4.7e-21 104.8 103 52.4
Atru.chr1.3269 Acer truncatum HOM05D006749 ORTHO05D008352 8.0e-21 104.0 103 52.4
Psat5g299040 Pisum sativum HOM05D006749 ORTHO05D008352 8.0e-21 104.0 103 53.4
Oeu025379.3 Olea europaea HOM05D006749 ORTHO05D008352 1.8e-20 102.8 103 48.5
Cpa.g.sc68.20 Carica papaya HOM05D006749 ORTHO05D008352 2.3e-20 102.4 103 50.5
Gohir.A06G188200 Gossypium hirsutum HOM05D006749 ORTHO05D008352 2.3e-20 102.4 103 51.5
Glyma.13G359600 Glycine max HOM05D006749 ORTHO05D008352 3.0e-20 102.1 103 50.5
Manes.04G123300 Manihot esculenta HOM05D006749 ORTHO05D008352 3.0e-20 102.1 103 52.4
Lj5C60T11 Lonicera japonica HOM05D006749 ORTHO05D008352 4.0e-20 101.7 103 51.5
TPR.G37281 Trifolium pratense HOM05D006749 ORTHO05D008352 5.2e-20 101.3 103 52.4
Gohir.D06G194300 Gossypium hirsutum HOM05D006749 ORTHO05D008352 6.8e-20 100.9 103 50.5
Gorai.010G228100 Gossypium raimondii HOM05D006749 ORTHO05D008352 6.8e-20 100.9 103 50.5
Peaxi162Scf00034g00085 Petunia axillaris HOM05D006749 ORTHO05D008352 6.8e-20 100.9 103 51.5
arahy.Tifrunner.gnm1.ann1.8GL56R Arachis hypogaea HOM05D006749 ORTHO05D008352 8.8e-20 100.5 103 52.4
arahy.Tifrunner.gnm1.ann1.SZQK1H Arachis hypogaea HOM05D006749 ORTHO05D008352 8.8e-20 100.5 103 52.4
arahy.Tifrunner.gnm1.ann1.TALZ6N Arachis hypogaea HOM05D006749 ORTHO05D008352 8.8e-20 100.5 103 52.4
Migut.I00863 Erythranthe guttata HOM05D006749 ORTHO05D008352 8.8e-20 100.5 103 50.5
Medtr2g102210 Medicago truncatula HOM05D006749 ORTHO05D008352 1.2e-19 100.1 103 51.5
vmacro16952 Vaccinium macrocarpon HOM05D006749 ORTHO05D008352 1.2e-19 100.1 103 49.5
Thecc.06G087000 Theobroma cacao HOM05D006749 ORTHO05D008352 2.0e-19 99.4 103 50.5
CANSAT54G2088 Cannabis sativa HOM05D006749 ORTHO05D008352 3.4e-19 98.6 103 47.6
ClCG07G013030 Citrullus lanatus HOM05D006749 ORTHO05D008352 3.4e-19 98.6 103 50.5
Dinv38048 Davidia involucrata HOM05D006749 ORTHO05D008352 3.4e-19 98.6 103 50.5
Nitab4.5_0002438g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 3.4e-19 98.6 103 49.5
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 3.4e-19 98.6 103 50.5
TAR626G0678 Trochodendron aralioides HOM05D006749 ORTHO05D008352 3.4e-19 98.6 103 48.5
CiPaw.02G151100 Carya illinoinensis HOM05D006749 ORTHO05D008352 4.4e-19 98.2 103 51.5
Nitab4.5_0008982g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 4.4e-19 98.2 103 49.5
Rhsim12G0197800 Rhododendron simsii HOM05D006749 ORTHO05D008352 4.4e-19 98.2 103 48.5
Cc04_g03450 Coffea canephora HOM05D006749 ORTHO05D008352 5.7e-19 97.8 103 50.5
Lalb_Chr22g0351261 Lupinus albus HOM05D006749 ORTHO05D008352 5.7e-19 97.8 100 52.0
MBI04_g22013_MAGBIO Magnolia biondii HOM05D006749 ORTHO05D008352 5.7e-19 97.8 101 51.5
SHI10915 Sapria himalayana HOM05D006749 ORTHO05D008352 5.7e-19 97.8 103 53.4
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 7.5e-19 97.4 103 46.6
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 7.5e-19 97.4 103 49.5
Cfa002064 Carpinus fangiana HOM05D006749 ORTHO05D008352 9.7e-19 97.1 103 50.5
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 9.7e-19 97.1 103 50.5
Actinidia08976 Actinidia chinensis HOM05D006749 ORTHO05D008352 1.3e-18 96.7 103 48.5
Nn3g16958 Nelumbo nucifera HOM05D006749 ORTHO05D008352 1.3e-18 96.7 103 50.5
Duzib235G0398 Durio zibethinus HOM05D006749 ORTHO05D008352 1.7e-18 96.3 103 46.6
Phvul.005G171500 Phaseolus vulgaris HOM05D006749 ORTHO05D008352 1.7e-18 96.3 100 50.0
Prupe.3G071400 Prunus persica HOM05D006749 ORTHO05D008352 1.7e-18 96.3 102 49.0
VMungo1080G0367 Vigna mungo HOM05D006749 ORTHO05D008352 1.7e-18 96.3 100 51.0
GSVIVG01017111001 Vitis vinifera HOM05D006749 ORTHO05D008352 1.7e-18 96.3 103 47.6
Dinv30512 Davidia involucrata HOM05D006749 ORTHO05D008352 2.2e-18 95.9 103 48.5
MD17G1195500 Malus domestica HOM05D006749 ORTHO05D008352 2.2e-18 95.9 103 47.6
CAN.G572.47 Capsicum annuum HOM05D006749 ORTHO05D008352 2.8e-18 95.5 103 47.6
CSS0018907 Camellia sinensis var. sinensis HOM05D006749 ORTHO05D008352 3.7e-18 95.1 103 46.6
AUR62016443 Chenopodium quinoa HOM05D006749 ORTHO05D008352 3.7e-18 95.1 103 48.5
DCAR_026313 Daucus carota HOM05D006749 ORTHO05D008352 3.7e-18 95.1 103 47.6
PGSC0003DMG400031380 Solanum tuberosum HOM05D006749 ORTHO05D008352 3.7e-18 95.1 103 47.6
Eucgr.J02992 Eucalyptus grandis HOM05D006749 ORTHO05D008352 4.8e-18 94.7 103 48.5
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 1.1e-17 93.6 103 44.7
PGR102G0966 Punica granatum HOM05D006749 ORTHO05D008352 1.1e-17 93.6 103 48.5
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 1.1e-17 93.6 100 48.0
Solyc12g043100.2 Solanum lycopersicum HOM05D006749 ORTHO05D008352 1.8e-17 92.8 103 47.6
Sopen12g022350 Solanum pennellii HOM05D006749 ORTHO05D008352 1.8e-17 92.8 103 47.6
Zm00001eb054940 Zea mays HOM05D006749 ORTHO05D008352 1.8e-17 92.8 102 43.1
Ciclev10023415m.g Citrus clementina HOM05D006749 ORTHO05D008352 2.4e-17 92.4 103 45.6
Zm00001eb378780 Zea mays HOM05D006749 ORTHO05D008352 3.1e-17 92.0 102 43.1
HanXRQChr09g0275241 Helianthus annuus HOM05D006749 ORTHO05D008352 4.1e-17 91.7 103 44.7
EL10Ac9g21998 Beta vulgaris HOM05D006749 ORTHO05D008352 5.3e-17 91.3 101 45.5
ATR0315G083 Amborella trichopoda HOM05D006749 ORTHO05D008352 7.0e-17 90.9 101 48.5
MSTRG.11079 Avicennia marina HOM05D006749 ORTHO05D008352 7.0e-17 90.9 103 45.6
CDE04G2662 Ceratophyllum demersum HOM05D006749 ORTHO05D008352 7.0e-17 90.9 101 44.6
CsaV3_3G025150 Cucumis sativus L. HOM05D006749 ORTHO05D008352 7.0e-17 90.9 103 45.6
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 7.0e-17 90.9 103 41.7
Aqoxy7G01745 Aquilegia oxysepala HOM05D001061 ORTHO05D007103 9.1e-17 90.5 103 44.7
Lsat_1_v5_gn_4_103720 Lactuca sativa HOM05D006749 ORTHO05D008352 9.1e-17 90.5 103 43.7
PSO229G0046 Papaver somniferum HOM05D006749 ORTHO05D008352 9.1e-17 90.5 103 41.7
SGA_v2.0_scaffold5G02592 Striga asiatica HOM05D006749 ORTHO05D008352 9.1e-17 90.5 103 48.5
MELO3C012957.2 Cucumis melo HOM05D006749 ORTHO05D008352 1.2e-16 90.1 103 45.6
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 1.6e-16 89.7 103 41.7
HPP92_021740 Vanilla planifolia HOM05D006749 ORTHO05D008352 1.6e-16 89.7 102 43.1
Zm00001eb279950 Zea mays HOM05D006749 ORTHO05D008352 4.5e-16 88.2 102 41.2
ECA248G2906 Erigeron canadensis HOM05D006749 ORTHO05D008352 7.7e-16 87.4 103 42.7
Ah.01g005340 Amaranthus hybridus HOM05D006749 ORTHO05D008352 1.3e-15 86.7 103 40.8
FvH4_6g31160 Fragaria vesca HOM05D006749 ORTHO05D008352 1.3e-15 86.7 103 44.7
FAN05G1436 Fragaria x ananassa HOM05D006749 ORTHO05D008352 1.3e-15 86.7 103 44.7
FAN09G1040 Fragaria x ananassa HOM05D006749 ORTHO05D008352 1.3e-15 86.7 103 44.7
FAN02G2386 Fragaria x ananassa HOM05D006749 ORTHO05D008352 1.7e-15 86.3 103 44.7
Os02g0266200 Oryza sativa ssp. japonica HOM05D006749 ORTHO05D008352 1.7e-15 86.3 102 39.2
FAN14G3575 Fragaria x ananassa HOM05D006749 ORTHO05D008352 2.9e-15 85.5 103 43.7
unitig_27.g25088 Utricularia gibba HOM05D006749 ORTHO05D008352 3.8e-15 85.1 103 42.7
Hund00615 Selenicereus undatus HOM05D006749 ORTHO05D008352 1.1e-14 83.6 99 44.4
RcHm_v2.0_Chr2g0137841 Rosa chinensis HOM05D006749 ORTHO05D008352 2.5e-14 82.4 103 42.7
SEGI_33426 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 1.8e-09 66.2 101 38.6
SEGI_33441 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 2.4e-09 65.9 101 39.6


User provided reference genes

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