Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 4.1e-182 642.1 585 100.0
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.5e-171 607.1 585 95.9
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.9e-166 590.1 585 95.4
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 5.8e-160 568.5 587 86.9
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.1e-158 564.3 585 92.8
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 7.3e-155 551.6 587 88.8
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 1.5e-152 543.9 584 88.9
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 9.9e-152 541.2 590 88.3
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.2e-144 517.7 590 86.6
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 8.7e-140 501.5 563 87.6
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 3.2e-134 483.0 562 87.2
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 6.6e-132 475.3 644 75.9
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 4.0e-129 466.1 585 83.2
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.0e-116 424.9 583 76.2
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 9.6e-115 418.3 585 75.9
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.3e-114 417.9 585 75.9
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 3.1e-113 413.3 585 77.9
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.8e-112 409.1 585 77.6
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 6.5e-111 405.6 518 88.0
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 2.1e-109 400.6 585 76.2
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.7e-109 400.2 585 74.4
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.0e-108 398.3 585 75.9
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 2.8e-106 390.2 581 74.4
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 3.7e-106 389.8 585 74.7
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 6.3e-106 389.0 581 76.1
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 3.1e-105 386.7 587 72.4
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.0e-103 381.7 583 74.4
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 3.2e-102 376.7 581 76.6
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 1.6e-101 374.4 582 68.6
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 5.7e-99 365.9 585 70.8
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 9.7e-99 365.2 583 72.2
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.2e-98 364.0 581 66.4
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.3e-97 359.4 655 62.0
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.3e-95 354.8 591 69.0
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.7e-95 354.4 581 70.9
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.0e-95 352.8 588 68.2
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.1e-94 351.7 585 71.5
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 4.7e-93 346.3 583 71.4
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 7.9e-93 345.5 585 69.1
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.0e-92 343.6 583 55.2
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 6.3e-90 335.9 583 67.4
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 8.2e-90 335.5 509 76.6
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.4e-89 334.7 591 68.5
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.2e-88 331.6 585 73.3
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 4.5e-88 329.7 505 73.5
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 5.9e-88 329.3 585 68.2
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.7e-87 327.8 585 68.9
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 3.8e-87 326.6 600 67.2
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 6.5e-87 325.9 585 69.1
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 6.5e-87 325.9 585 66.7
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.1e-86 325.1 574 59.4
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 5.5e-86 322.8 585 73.2
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.3e-84 317.4 585 69.9
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 5.7e-83 312.8 585 66.7
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 7.4e-83 312.4 581 68.7
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 2.8e-82 310.5 602 62.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 4.8e-82 309.7 585 68.2
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 5.9e-80 302.8 583 67.8
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 8.5e-79 298.9 509 70.7
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.5e-78 298.1 583 66.0
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.5e-78 298.1 588 56.5
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 7.2e-78 295.8 564 69.9
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 1.6e-77 294.7 534 68.7
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 2.7e-77 293.9 585 67.2
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 6.1e-77 292.7 585 67.4
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 2.3e-76 290.8 319 61.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 6.8e-76 289.3 564 73.4
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 2.0e-75 287.7 446 80.5
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.0e-75 287.7 314 63.1
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.7e-74 284.6 602 65.8
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.2e-74 284.3 582 66.3
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 4.8e-74 283.1 583 65.7
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 3.1e-73 280.4 630 62.9
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 5.3e-73 279.6 556 62.9
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 7.0e-73 279.3 509 58.3
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 3.8e-71 273.5 585 64.4
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 5.0e-71 273.1 685 58.1
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 6.5e-71 272.7 598 58.5
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.1e-70 271.9 592 61.1
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 7.2e-70 269.2 582 65.3
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.4e-68 265.0 582 64.8
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 3.0e-68 263.8 587 63.7
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 6.8e-68 262.7 585 60.2
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 1.5e-67 261.5 586 64.2
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 7.5e-67 259.2 596 57.0
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.8e-65 254.6 409 61.6
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 7.0e-65 252.7 328 67.4
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 9.1e-65 252.3 558 58.2
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.6e-64 251.5 592 62.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 5.9e-64 249.6 584 65.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 2.3e-63 247.7 584 61.6
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 4.2e-62 243.4 409 60.4
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 7.2e-62 242.7 562 64.4
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 8.0e-61 239.2 586 62.5
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 5.2e-60 236.5 594 58.4
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 2.2e-58 231.1 562 57.8
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.2e-58 231.1 583 62.4
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 6.3e-58 229.6 301 55.8
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 8.3e-58 229.2 588 61.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.6e-56 224.9 559 39.0
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.9e-49 201.4 584 60.8
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 6.6e-47 193.0 542 59.8
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 3.2e-41 174.1 225 56.4
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 3.6e-37 160.6 198 61.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 6.4e-34 149.8 146 56.8
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.4e-28 131.3 120 68.3
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.7e-23 115.2 244 33.2
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-22 112.1 144 62.5
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-22 112.1 144 62.5
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-22 112.1 144 62.5
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.6e-22 110.2 75 66.7
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 2.8e-21 107.8 75 68.0
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 2.8e-21 107.8 75 68.0
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 8.1e-21 106.3 75 66.7
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 1.8e-20 105.1 75 66.7
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.4e-19 100.5 98 56.1
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.6e-16 92.0 101 76.2
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.5e-14 85.5 150 40.7
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 7.3e-14 83.2 40 100.0
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.6e-13 82.0 97 75.3
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 2.1e-13 81.6 60 61.7
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 5.3e-12 77.0 135 39.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 2.6e-11 74.7 75 46.7
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.4e-11 74.3 237 43.0
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 5.8e-11 73.6 53 66.0
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 5.8e-11 73.6 301 29.6
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 3.8e-10 70.9 75 50.7


User provided reference genes

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