Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27910 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 3.8e-174 614.8 318 100.0
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 2.2e-121 439.5 230 97.8
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 8.3e-121 437.6 230 96.5
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 1.1e-120 437.2 230 97.4
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 1.1e-120 437.2 230 97.0
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 7.1e-120 434.5 229 96.5
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 1.0e-118 430.6 226 97.8
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 1.5e-114 416.8 227 93.4
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 1.4e-112 410.2 227 92.1
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 1.4e-112 410.2 227 92.1
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 1.4e-112 410.2 227 92.1
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 4.1e-112 408.7 227 91.6
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 1.0e-110 404.1 262 82.4
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 1.0e-110 404.1 262 82.4
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 6.6e-110 401.4 223 91.5
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 4.3e-109 398.7 223 91.5
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 4.3e-109 398.7 223 91.5
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 8.7e-102 374.4 232 81.5
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 1.8e-99 366.7 232 79.7
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 5.3e-99 365.2 232 79.3
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 2.0e-98 363.2 230 80.0
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 2.6e-98 362.8 230 80.9
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 4.5e-98 362.1 230 79.6
AL230U10050 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 3.8e-97 359.0 228 83.8
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 3.8e-97 359.0 230 78.3
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 3.8e-97 359.0 233 79.4
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 4.9e-97 358.6 232 78.9
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.9e-96 356.7 232 78.4
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 1.9e-96 356.7 232 78.4
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 3.2e-96 355.9 225 79.6
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 4.2e-96 355.5 230 77.0
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 5.4e-96 355.1 232 79.3
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 5.4e-96 355.1 230 78.3
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 7.1e-96 354.8 230 78.3
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 7.1e-96 354.8 230 78.3
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 9.3e-96 354.4 232 78.0
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 1.2e-95 354.0 230 78.7
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 1.6e-95 353.6 230 78.7
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 1.6e-95 353.6 230 78.7
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 1.6e-95 353.6 232 77.6
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 2.7e-95 352.8 232 77.2
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 6.0e-95 351.7 268 69.8
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 6.0e-95 351.7 230 78.3
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.0e-94 350.9 230 77.4
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 1.0e-94 350.9 227 78.4
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 8.7e-94 347.8 232 76.7
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.1e-93 347.4 230 77.0
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 1.5e-93 347.1 232 75.9
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 1.5e-93 347.1 230 77.0
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 5.6e-93 345.1 232 76.3
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 3.7e-92 342.4 228 75.4
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 3.7e-92 342.4 232 76.7
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 4.8e-92 342.0 232 74.1
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 8.1e-92 341.3 230 76.5
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 8.1e-92 341.3 232 75.4
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 8.1e-92 341.3 227 75.3
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 1.8e-91 340.1 232 75.4
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 3.1e-91 339.3 230 75.2
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 3.1e-91 339.3 232 75.0
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 4.0e-91 339.0 232 74.6
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 9.0e-91 337.8 230 76.1
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 1.2e-90 337.4 232 75.9
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 3.4e-90 335.9 230 75.7
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 4.5e-90 335.5 230 73.9
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 5.8e-90 335.1 223 76.2
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 5.8e-90 335.1 227 74.9
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 7.6e-90 334.7 232 75.0
Cc05_g12210 Coffea canephora HOM05D003356 ORTHO05D004362 7.6e-90 334.7 232 75.0
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 9.9e-90 334.3 232 75.4
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 1.3e-89 334.0 230 73.5
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 2.2e-89 333.2 232 74.6
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 2.2e-89 333.2 229 75.1
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 2.9e-89 332.8 224 74.1
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 6.4e-89 331.6 232 74.1
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 6.4e-89 331.6 232 73.3
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 6.4e-89 331.6 227 75.3
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 1.1e-88 330.9 232 74.1
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 1.4e-88 330.5 176 94.3
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 1.4e-88 330.5 227 74.4
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 1.9e-88 330.1 227 74.9
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 2.4e-88 329.7 227 74.9
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 3.2e-88 329.3 230 74.3
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 3.2e-88 329.3 230 74.3
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 4.2e-88 328.9 232 74.6
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 5.5e-88 328.6 232 72.0
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 7.1e-88 328.2 228 75.4
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 9.3e-88 327.8 232 73.3
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.6e-87 327.0 232 73.7
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 2.1e-87 326.6 232 71.1
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 3.5e-87 325.9 223 74.9
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 3.5e-87 325.9 232 71.6
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 6.0e-87 325.1 227 71.4
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 7.9e-87 324.7 230 72.6
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 7.9e-87 324.7 230 72.2
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 1.3e-86 323.9 227 70.9
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 1.8e-86 323.6 224 72.8
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 1.8e-86 323.6 232 72.0
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 3.9e-86 322.4 232 72.4
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 5.1e-86 322.0 226 73.9
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 6.7e-86 321.6 224 72.8
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 1.1e-85 320.9 232 70.3
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 2.5e-85 319.7 230 71.3
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 3.3e-85 319.3 230 72.2
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 3.3e-85 319.3 228 71.1
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 4.3e-85 318.9 230 73.0
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 5.6e-85 318.5 230 72.2
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 5.6e-85 318.5 232 72.0
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 5.6e-85 318.5 233 70.8
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.3e-84 317.4 230 72.2
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 2.1e-84 316.6 230 71.7
Lalb_Chr25g0286481 Lupinus albus HOM05D003356 ORTHO05D004362 2.1e-84 316.6 230 73.0
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 2.8e-84 316.2 228 73.2
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 3.7e-84 315.8 233 70.0
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 4.8e-84 315.5 228 71.9
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 8.2e-84 314.7 230 71.3
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 8.2e-84 314.7 228 70.2
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 1.8e-83 313.5 231 70.6
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 3.1e-83 312.8 228 69.3
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 3.1e-83 312.8 232 70.7
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 5.3e-83 312.0 224 71.0
Dinv08306 Davidia involucrata HOM05D003356 ORTHO05D004362 6.9e-83 311.6 232 72.4
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 6.9e-83 311.6 224 71.4
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 9.0e-83 311.2 230 70.4
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 9.0e-83 311.2 231 70.1
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 9.0e-83 311.2 228 71.1
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 2.6e-82 309.7 227 70.9
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 7.6e-82 308.1 223 70.9
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 1.0e-81 307.8 232 69.4
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 1.7e-81 307.0 222 70.7
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 1.7e-81 307.0 223 69.5
Lalb_Chr19g0134291 Lupinus albus HOM05D003356 ORTHO05D004362 3.8e-81 305.8 228 69.3
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 2.5e-80 303.1 230 68.3
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 5.5e-80 302.0 230 68.3
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 1.2e-79 300.8 230 67.8
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 4.6e-79 298.9 222 68.9
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 6.0e-79 298.5 230 67.4
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 5.1e-78 295.4 226 64.2
HPP92_020871 Vanilla planifolia HOM05D003356 ORTHO05D004362 1.9e-77 293.5 222 63.5
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 4.1e-75 285.8 168 85.7
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 5.3e-75 285.4 232 66.8
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 2.0e-74 283.5 226 65.5
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 1.3e-73 280.8 229 63.8
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 1.4e-72 277.3 221 66.1
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 2.7e-71 273.1 224 63.4
ECA236G3466 Erigeron canadensis HOM05D003356 ORTHO05D004362 5.1e-70 268.9 217 64.1
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 4.8e-68 262.3 230 63.0
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 7.9e-63 245.0 221 55.7
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 7.9e-63 245.0 212 57.1
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 2.8e-60 236.5 168 71.4
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 1.4e-56 224.2 162 69.1
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 7.7e-50 201.8 130 79.2
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 1.0e-49 201.4 228 47.8
Pp3c13_16790 Physcomitrium patens HOM05D003356 ORTHO05D004362 2.5e-48 196.8 220 47.7
TAR626G1858 Trochodendron aralioides HOM05D003356 ORTHO05D004362 1.8e-46 190.7 119 79.8
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 6.7e-46 188.7 217 47.5
CBR_g34641 Chara braunii HOM05D003356 ORTHO05D004362 8.8e-46 188.3 217 47.0
MCO09G800 Micromonas commoda HOM05D003356 ORTHO05D004362 4.7e-39 166.0 220 42.3
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 4.0e-38 162.9 208 41.8
PRCOL_00004496 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 5.2e-38 162.5 219 39.7
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 5.9e-34 149.1 215 37.7
MCO04G353 Micromonas commoda HOM05D003356 ORTHO05D004362 4.2e-32 142.9 219 37.4
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 1.0e-30 138.3 93 71.0
Actinidia18761 Actinidia chinensis HOM05D003356 ORTHO05D004362 5.2e-30 136.0 102 68.6
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 1.7e-28 131.0 209 37.3
arahy.Tifrunner.gnm1.ann1.4J6IUL Arachis hypogaea HOM05D003356 ORTHO05D004362 1.1e-27 128.3 111 62.2
C06p20510 Brassica napus HOM05D000996 ORTHO05D021865 4.6e-18 96.3 63 74.6
BolC6t37232H Brassica oleracea HOM05D000996 ORTHO05D021865 4.6e-18 96.3 63 74.6
BcaB04g20929 Brassica carinata HOM05D003356 ORTHO05D031488 7.8e-18 95.5 53 88.7
HPP92_014741 Vanilla planifolia HOM05D003356 ORTHO05D004362 1.0e-17 95.1 114 49.1
Psat7g229040 Pisum sativum HOM05D003356 ORTHO05D004362 2.3e-17 94.0 63 71.4
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 5.0e-17 92.8 48 97.9
HPP92_014740 Vanilla planifolia HOM05D003356 ORTHO05D031488 1.5e-16 91.3 78 59.0
arahy.Tifrunner.gnm1.ann1.71RN23 Arachis hypogaea HOM05D003356 ORTHO05D014021 3.3e-16 90.1 90 50.0
arahy.Tifrunner.gnm1.ann1.H20E9K Arachis hypogaea HOM05D003356 ORTHO05D031488 1.1e-14 85.1 60 75.0
arahy.Tifrunner.gnm1.ann1.7XQU0B Arachis hypogaea HOM05D003356 ORTHO05D083362 1.5e-13 81.3 106 47.2
TPR.G17977 Trifolium pratense HOM05D003356 ORTHO05D030555 2.6e-13 80.5 61 65.6
PRCOL_00001912 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 4.4e-13 79.7 193 29.0
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 2.1e-10 70.9 63 60.3
Rhsim04G0019900 Rhododendron simsii HOM05D055487 ORTHO05D338639 1.7e-09 67.8 61 55.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 7.3e-08 62.4 179 26.8
arahy.Tifrunner.gnm1.ann1.93B9CG Arachis hypogaea HOM05D003356 ORTHO05D004362 2.1e-07 60.8 44 68.2
AL230U10040 Arabidopsis lyrata HOM05D052722 ORTHO05D080219 4.7e-07 59.7 67 53.7
AL3G27920 Arabidopsis lyrata HOM05D052722 ORTHO05D080175 4.7e-07 59.7 67 53.7


User provided reference genes

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