Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 0.0e+00 1112.4 563 100.0
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 0.0e+00 1084.7 563 97.2
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 0.0e+00 1083.6 563 97.2
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.1e-309 1065.8 563 95.4
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 2.1e-308 1061.6 563 94.8
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 7.9e-308 1059.7 563 94.7
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.4e-307 1058.9 563 94.7
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 3.0e-307 1057.7 563 94.5
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 3.1e-304 1047.7 561 94.5
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 4.1e-304 1047.3 563 93.6
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 2.8e-297 1024.6 585 89.6
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 2.4e-296 1021.5 564 90.6
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 5.2e-275 950.7 570 85.1
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 3.0e-246 855.1 575 76.3
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 8.1e-244 847.0 572 75.9
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.8e-243 845.9 571 75.8
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.2e-243 844.3 572 75.5
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 6.8e-243 844.0 573 76.1
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 2.2e-241 839.0 568 76.2
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 8.4e-241 837.0 574 75.1
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 1.4e-240 836.3 569 76.1
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 3.2e-240 835.1 571 75.3
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 3.2e-240 835.1 573 74.5
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 5.4e-240 834.3 573 74.9
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 7.8e-239 830.5 572 75.5
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.3e-238 829.7 572 74.8
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.3e-238 829.7 568 75.4
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 2.3e-238 828.9 573 74.3
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 8.7e-238 827.0 570 74.7
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 2.5e-237 825.5 573 74.5
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 4.3e-237 824.7 573 74.0
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.1e-236 822.4 570 75.1
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.8e-235 819.3 570 74.6
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.1e-235 818.5 570 74.6
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 6.9e-235 817.4 577 73.8
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 9.0e-235 817.0 568 74.3
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 1.5e-234 816.2 572 73.8
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 2.2e-233 812.4 573 72.1
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 1.1e-232 810.1 640 67.5
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.4e-232 808.9 561 75.2
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.1e-231 805.8 579 72.9
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 4.6e-231 804.7 574 71.6
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.6e-231 804.7 575 72.9
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 6.0e-231 804.3 569 72.8
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 3.9e-230 801.6 566 72.1
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 5.1e-230 801.2 562 72.8
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 1.1e-229 800.0 566 72.8
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.1e-229 800.0 569 71.4
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 1.9e-229 799.3 569 72.6
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 7.3e-229 797.3 555 74.8
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.4e-227 793.1 549 74.5
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 1.8e-227 792.7 567 72.3
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 9.0e-227 790.4 552 74.5
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.2e-226 790.0 574 72.3
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.2e-226 790.0 573 70.5
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 3.4e-226 788.5 632 67.4
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 3.4e-226 788.5 573 70.3
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.4e-224 783.1 568 72.0
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.9e-224 782.7 551 74.4
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 7.9e-223 777.3 567 70.2
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 1.8e-222 776.2 573 71.0
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 5.1e-222 774.6 592 68.8
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 8.7e-222 773.9 557 71.5
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 1.5e-221 773.1 565 70.6
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.5e-221 773.1 559 71.2
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 3.3e-221 771.9 567 69.7
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 6.9e-219 764.2 563 70.5
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 2.0e-218 762.7 563 69.6
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.6e-218 762.3 572 71.3
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.3e-217 760.0 563 69.8
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 4.9e-217 758.1 564 69.9
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 2.5e-216 755.7 576 69.1
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.1e-215 752.7 618 66.2
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.7e-215 752.3 569 69.1
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.6e-215 751.5 573 70.0
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 4.6e-215 751.5 568 69.0
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.6e-212 743.0 591 67.5
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 4.0e-211 738.4 557 69.8
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 3.8e-209 731.9 558 68.6
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 9.3e-208 727.2 540 71.5
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 5.3e-203 711.4 566 64.5
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 5.9e-202 708.0 566 65.9
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.1e-200 703.7 575 67.0
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 7.2e-200 701.0 612 63.9
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 4.3e-197 691.8 589 64.5
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 9.7e-197 690.6 517 69.2
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 6.9e-195 684.5 554 66.1
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 9.4e-184 647.5 433 77.6
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.4e-173 612.5 444 72.5
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 1.8e-171 606.7 567 56.3
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 3.0e-166 589.3 321 93.8
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 1.2e-165 587.4 690 50.0
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 3.4e-165 585.9 568 54.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.3e-153 547.4 561 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 3.7e-148 529.3 568 50.5
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.7e-137 493.8 555 50.3
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 7.4e-104 382.1 273 68.1
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.5e-98 363.2 277 68.6
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 8.7e-89 332.0 277 62.1
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 2.2e-84 317.4 225 73.3
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.7e-68 264.6 197 68.5
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 2.1e-50 204.5 164 64.6
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.3e-47 195.3 302 45.0
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.8e-47 194.1 242 43.0
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.8e-41 174.9 120 72.5
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.5e-40 171.8 116 72.4
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.9e-39 166.8 120 70.0
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 5.9e-37 159.8 149 56.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 4.7e-34 150.2 129 58.9
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 1.9e-30 138.3 117 63.2
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 9.5e-27 125.9 178 46.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.6e-24 117.9 174 43.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.7e-23 114.0 94 60.6
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.4e-22 110.2 191 39.8
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 1.1e-17 95.9 123 43.1
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 2.2e-15 88.2 84 56.0
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.4e-14 85.5 95 46.3
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.4e-14 85.5 137 42.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 7.8e-13 79.7 45 82.2
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 9.6e-11 72.8 57 73.7
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-10 72.0 212 29.7
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.1e-10 69.7 176 31.8
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.1e-09 69.3 51 74.5
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.4e-09 68.9 130 36.9
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 4.0e-09 67.4 158 33.5
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 1.2e-08 65.9 37 86.5
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 3.8e-07 60.8 94 38.3


User provided reference genes

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