Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 7.1e-99 364.0 192 100.0
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 5.6e-96 354.4 192 97.4
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.1e-86 323.6 197 90.4
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 2.0e-85 319.3 196 87.8
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 2.6e-85 318.9 196 89.3
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.0e-81 307.0 199 85.4
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 5.6e-80 301.2 200 85.0
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 9.6e-80 300.4 200 85.0
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 9.6e-80 300.4 200 85.0
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 1.6e-79 299.7 197 86.3
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 6.2e-79 297.7 197 85.8
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 8.1e-79 297.4 199 84.4
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 2.4e-78 295.8 194 84.0
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 2.4e-78 295.8 197 85.3
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 3.4e-77 292.0 194 84.0
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-76 290.0 196 83.2
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.7e-76 289.7 196 82.7
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.7e-76 289.7 196 82.7
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 5.5e-75 284.6 198 82.3
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 5.5e-75 284.6 198 82.3
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 5.5e-75 284.6 202 80.7
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.0e-73 280.4 198 80.8
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.8e-73 279.6 198 78.3
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 7.4e-72 274.2 197 77.2
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 6.2e-71 271.2 198 76.8
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 3.5e-66 255.4 204 71.6
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.3e-64 248.8 198 70.2
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 5.7e-64 248.1 209 68.4
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 7.4e-64 247.7 194 72.7
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.3e-63 246.9 198 70.2
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.3e-63 246.9 198 70.2
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.3e-63 246.9 194 72.7
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.6e-63 246.5 198 70.2
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.7e-63 245.4 194 71.6
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 8.2e-63 244.2 208 67.8
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 8.2e-63 244.2 198 69.2
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.8e-62 243.0 197 71.1
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.8e-62 243.0 213 66.2
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.8e-62 243.0 207 68.6
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.4e-62 242.7 208 68.3
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 4.1e-62 241.9 194 71.1
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.9e-62 241.1 196 70.9
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.0e-62 240.7 196 70.4
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 9.0e-62 240.7 196 70.4
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 9.0e-62 240.7 194 71.6
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 2.0e-61 239.6 206 67.0
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 2.6e-61 239.2 193 73.1
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 2.6e-61 239.2 214 65.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 7.6e-61 237.7 194 70.1
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 1.7e-60 236.5 201 66.7
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 1.7e-60 236.5 203 68.0
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 2.2e-60 236.1 196 69.9
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 6.5e-60 234.6 211 65.4
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 6.5e-60 234.6 199 66.8
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 8.5e-60 234.2 211 65.4
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 8.5e-60 234.2 202 66.3
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.1e-59 233.8 207 65.7
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.1e-59 233.8 191 68.6
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 2.5e-59 232.6 194 68.6
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 3.2e-59 232.3 164 76.8
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 4.2e-59 231.9 205 67.3
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 5.5e-59 231.5 193 67.9
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 5.5e-59 231.5 209 63.6
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 2.1e-58 229.6 196 68.9
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 2.7e-58 229.2 211 63.0
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 3.6e-58 228.8 192 67.2
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.8e-57 226.5 212 62.7
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.8e-57 226.5 201 64.7
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 1.8e-57 226.5 208 64.4
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.3e-57 226.1 197 66.0
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 2.3e-57 226.1 194 66.0
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 3.9e-57 225.3 208 66.3
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 3.9e-57 225.3 207 65.2
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 3.9e-57 225.3 192 65.6
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 3.9e-57 225.3 209 64.1
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 8.8e-57 224.2 210 66.2
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 8.8e-57 224.2 174 71.8
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 8.8e-57 224.2 196 66.8
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 8.8e-57 224.2 196 66.3
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.5e-56 223.4 209 66.0
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 1.5e-56 223.4 206 65.0
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.5e-56 223.4 203 63.1
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 1.9e-56 223.0 194 66.0
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 2.5e-56 222.6 206 65.0
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 5.7e-56 221.5 146 78.1
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 7.4e-56 221.1 211 65.4
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 7.4e-56 221.1 194 65.5
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 7.4e-56 221.1 194 64.9
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 9.7e-56 220.7 192 65.1
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.3e-55 220.3 210 61.9
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 1.7e-55 219.9 194 66.0
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.7e-55 219.9 197 66.5
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.7e-55 219.9 197 66.5
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.7e-55 219.9 197 66.5
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.7e-55 219.9 211 64.5
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 2.2e-55 219.5 198 63.1
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 2.8e-55 219.2 165 75.8
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.8e-55 219.2 192 67.2
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 3.7e-55 218.8 202 63.4
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 4.8e-55 218.4 197 67.0
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.3e-55 218.0 192 65.1
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 6.3e-55 218.0 202 66.3
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.8e-54 216.5 194 64.9
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 3.1e-54 215.7 202 63.4
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 3.1e-54 215.7 203 61.6
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 3.1e-54 215.7 195 63.1
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 3.1e-54 215.7 162 72.2
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 4.1e-54 215.3 202 63.4
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 5.3e-54 214.9 206 63.6
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 5.3e-54 214.9 207 64.3
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 9.1e-54 214.2 206 64.6
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 9.1e-54 214.2 192 63.0
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 9.1e-54 214.2 198 67.2
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.5e-53 213.4 201 62.7
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.5e-53 211.8 205 63.4
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.5e-53 211.8 104 98.1
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 7.7e-53 211.1 115 90.4
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 7.7e-53 211.1 192 65.1
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.0e-52 210.7 190 64.2
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.2e-52 209.5 104 97.1
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 2.2e-52 209.5 192 63.0
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 3.8e-52 208.8 104 96.2
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-51 207.2 104 97.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.1e-51 207.2 111 89.2
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 1.1e-51 207.2 205 62.0
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.9e-51 206.5 104 95.2
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 4.2e-51 205.3 202 61.9
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.2e-50 203.8 193 61.1
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 2.7e-50 202.6 192 59.9
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 1.4e-49 200.3 192 59.4
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.3e-49 199.5 164 68.9
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 3.0e-49 199.1 193 58.0
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.0e-49 199.1 112 88.4
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 3.0e-49 199.1 189 63.5
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.4e-46 190.3 103 92.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 2.4e-46 189.5 100 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.2e-43 179.1 104 80.8
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 3.9e-41 172.2 190 55.8
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 6.7e-41 171.4 170 57.6
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.6e-40 169.5 191 56.0
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 4.4e-40 168.7 194 53.6
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.8e-38 163.3 192 50.5
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.6e-37 159.5 101 75.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.6e-34 150.2 197 46.2
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 6.7e-33 144.8 115 60.0
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 2.2e-31 139.8 149 55.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 5.3e-30 135.2 121 55.4
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.3e-23 114.0 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 3.8e-20 102.4 137 43.1
BolC1t05144H Brassica oleracea HOM05D004814 ORTHO05D005778 2.9e-12 76.3 104 55.8
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 4.1e-06 55.8 192 32.3


User provided reference genes

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