Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24700 Arabidopsis lyrata HOM05D000516 ORTHO05D079281 1.9e-56 222.2 109 100.0
AL4G10350 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 3.8e-49 198.0 107 90.7
AT2G21230 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 1.3e-41 172.9 111 82.0
Carub.0004s0026 Capsella rubella HOM05D000516 ORTHO05D000409 1.2e-39 166.4 114 77.2
Sp4g00410 Schrenkiella parvula HOM05D000516 ORTHO05D000409 5.5e-32 141.0 124 63.7
Thhalv10000129m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 8.0e-31 137.1 113 69.9
BcaC02g08809 Brassica carinata HOM05D000516 ORTHO05D000409 5.0e-25 117.9 110 61.8
A04p15960 Brassica napus HOM05D000516 ORTHO05D000409 4.7e-23 111.3 121 56.2
BolC4t26640H Brassica oleracea HOM05D000516 ORTHO05D021923 1.0e-22 110.2 123 55.3
BraA04t17232Z Brassica rapa HOM05D000516 ORTHO05D021923 1.0e-22 110.2 109 58.7
C04p50430 Brassica napus HOM05D000516 ORTHO05D014977 4.4e-21 104.8 86 70.9
BcaB08g34973 Brassica carinata HOM05D000516 ORTHO05D000409 1.3e-17 93.2 107 55.1
Thhalv10024895m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 2.3e-17 92.4 123 50.4
AT4G38900 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 8.6e-17 90.5 133 46.6
AL7G10780 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 1.1e-16 90.1 140 45.0
Aa31LG7G15260 Aethionema arabicum HOM05D000516 ORTHO05D000409 1.6e-15 86.3 95 57.9
Aa31LG7G15250 Aethionema arabicum HOM05D000516 ORTHO05D000409 8.0e-15 84.0 129 45.7
Sp7g36940 Schrenkiella parvula HOM05D000516 ORTHO05D000409 9.8e-13 77.0 129 45.7
THA.LOC104804107 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 4.9e-12 74.7 94 51.1
THA.LOC104807778 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 1.1e-11 73.6 131 43.5
Potri.004G163800 Populus trichocarpa HOM05D000516 ORTHO05D000409 1.4e-11 73.2 127 44.1
Manes.04G082600 Manihot esculenta HOM05D000516 ORTHO05D000409 1.9e-11 72.8 131 42.0
Sabra04G0110000 Salix brachista HOM05D000516 ORTHO05D000409 7.0e-11 70.9 127 43.3
Cfa005121 Carpinus fangiana HOM05D004284 ORTHO05D006610 1.6e-10 69.7 127 40.2
Haze_02228 Corylus avellana HOM05D000516 ORTHO05D000409 1.6e-10 69.7 127 40.2
Potri.009G125400 Populus trichocarpa HOM05D000516 ORTHO05D000409 2.0e-10 69.3 127 41.7
Thecc.02G073600 Theobroma cacao HOM05D000516 ORTHO05D000409 2.0e-10 69.3 150 38.7
Duzib052G0784 Durio zibethinus HOM05D000516 ORTHO05D000409 3.5e-10 68.6 146 39.0
BcaC01g00262 Brassica carinata HOM05D000516 ORTHO05D000409 2.3e-09 65.9 87 50.6
Dinv23447 Davidia involucrata HOM05D000516 ORTHO05D000409 2.3e-09 65.9 91 49.5
Duzib132G0332 Durio zibethinus HOM05D000516 ORTHO05D000409 2.3e-09 65.9 121 40.5
Gohir.A03G199700 Gossypium hirsutum HOM05D000516 ORTHO05D000409 2.3e-09 65.9 127 40.2
Cpa.g.sc150.7 Carica papaya HOM05D000516 ORTHO05D000409 3.0e-09 65.5 132 37.1
Glyma.12G036400 Glycine max HOM05D000516 ORTHO05D000409 3.0e-09 65.5 124 40.3
TWI79G1629 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 3.0e-09 65.5 142 38.0
BcaB03g12229 Brassica carinata HOM05D000516 ORTHO05D000409 3.9e-09 65.1 109 46.8
COL.COLO4_10617 Corchorus olitorius HOM05D004284 ORTHO05D006610 3.9e-09 65.1 151 37.7
BcaNung01296 Brassica carinata HOM05D000516 ORTHO05D000409 5.0e-09 64.7 125 40.8
Sabra09G0096400 Salix brachista HOM05D000516 ORTHO05D000409 5.0e-09 64.7 127 40.2
Gohir.A13G086400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 6.6e-09 64.3 156 35.9
Gohir.D13G090900 Gossypium hirsutum HOM05D000516 ORTHO05D000409 6.6e-09 64.3 156 35.9
Gorai.001G243800 Gossypium raimondii HOM05D000516 ORTHO05D000409 6.6e-09 64.3 156 35.9
Gohir.D02G221000 Gossypium hirsutum HOM05D000516 ORTHO05D000409 8.6e-09 63.9 127 40.2
Duzib248G1035 Durio zibethinus HOM05D000516 ORTHO05D000409 1.1e-08 63.5 152 38.2
Lj9A383G58 Lonicera japonica HOM05D000516 ORTHO05D000409 1.1e-08 63.5 96 47.9
Nitab4.5_0007623g0020 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.1e-08 63.5 97 47.4
Nitab4.5_0008276g0020 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.1e-08 63.5 97 47.4
QL11p046604 Quercus lobata HOM05D000516 ORTHO05D000409 1.1e-08 63.5 125 39.2
A08p23960 Brassica napus HOM05D000516 ORTHO05D000409 1.5e-08 63.2 77 54.5
Nitab4.5_0005266g0040 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.5e-08 63.2 97 47.4
CARHR247860 Cardamine hirsuta HOM05D000516 ORTHO05D000409 1.9e-08 62.8 128 39.1
Gorai.005G248900 Gossypium raimondii HOM05D000516 ORTHO05D000409 1.9e-08 62.8 127 39.4
Dinv41990 Davidia involucrata HOM05D000516 ORTHO05D000409 2.5e-08 62.4 96 49.0
Peaxi162Scf00538g00237 Petunia axillaris HOM05D000516 ORTHO05D000409 4.3e-08 61.6 97 46.4
TWI75G0980 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 4.3e-08 61.6 98 43.9
SalBow6G2178 Salvia bowleyana HOM05D000516 ORTHO05D000409 5.6e-08 61.2 93 46.2
Ciclev10028062m.g Citrus clementina HOM05D000516 ORTHO05D000409 7.3e-08 60.8 99 42.4
FvH4_2g10670 Fragaria vesca HOM05D000516 ORTHO05D000409 7.3e-08 60.8 110 41.8
FAN15G2661 Fragaria x ananassa HOM05D000516 ORTHO05D000409 7.3e-08 60.8 110 41.8
FAN20G2885 Fragaria x ananassa HOM05D000516 ORTHO05D000409 7.3e-08 60.8 110 41.8
FAN24G0034 Fragaria x ananassa HOM05D000516 ORTHO05D000409 7.3e-08 60.8 110 41.8
FAN27G2934 Fragaria x ananassa HOM05D000516 ORTHO05D000409 7.3e-08 60.8 110 41.8
CSS0001216 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 9.5e-08 60.5 95 48.4
RcHm_v2.0_Chr6g0268361 Rosa chinensis HOM05D000516 ORTHO05D000409 9.5e-08 60.5 124 40.3
Phvul.011G038200 Phaseolus vulgaris HOM05D000516 ORTHO05D000409 1.2e-07 60.1 99 43.4
Solyc01g110480.4 Solanum lycopersicum HOM05D000516 ORTHO05D000409 1.2e-07 60.1 97 44.3
Sopen01g052610 Solanum pennellii HOM05D000516 ORTHO05D000409 1.2e-07 60.1 97 44.3
PGSC0003DMG400001659 Solanum tuberosum HOM05D000516 ORTHO05D000409 1.2e-07 60.1 97 44.3
Ca_09577_v3 Cicer arietinum L. HOM05D000516 ORTHO05D000409 2.1e-07 59.3 107 42.1
CSS0041662 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 2.8e-07 58.9 85 48.2
ClCG02G004460 Citrullus lanatus HOM05D000516 ORTHO05D000409 2.8e-07 58.9 116 40.5
VMungo1127G0027 Vigna mungo HOM05D000516 ORTHO05D000409 2.8e-07 58.9 129 38.0
MELO3C013408.2 Cucumis melo HOM05D000516 ORTHO05D000409 3.6e-07 58.5 116 39.7
CsaV3_7G000510 Cucumis sativus L. HOM05D000516 ORTHO05D000409 3.6e-07 58.5 116 39.7
Rhsim05G0067700 Rhododendron simsii HOM05D000516 ORTHO05D000409 3.6e-07 58.5 91 48.4
Sed0022902 Sechium edule HOM05D000516 ORTHO05D000409 3.6e-07 58.5 115 38.3
CiPaw.06G127400 Carya illinoinensis HOM05D000516 ORTHO05D000409 4.7e-07 58.2 124 38.7
CiPaw.05G074200 Carya illinoinensis HOM05D000516 ORTHO05D000409 6.2e-07 57.8 122 37.7
Glyma.11G110400 Glycine max HOM05D000516 ORTHO05D000409 6.2e-07 57.8 134 35.8
Oeu002963.1 Olea europaea HOM05D000516 ORTHO05D000409 6.2e-07 57.8 97 45.4
TWI31G0661 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 8.0e-07 57.4 93 46.2
Actinidia20652 Actinidia chinensis HOM05D000516 ORTHO05D000409 1.1e-06 57.0 90 46.7
CSS0018311 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 1.1e-06 57.0 85 47.1
ClCG02G004450 Citrullus lanatus HOM05D000516 ORTHO05D000409 1.1e-06 57.0 99 43.4
CsaV3_7G000520 Cucumis sativus L. HOM05D000516 ORTHO05D000409 1.1e-06 57.0 126 39.7
Peaxi162Scf00016g00044 Petunia axillaris HOM05D000516 ORTHO05D000409 1.1e-06 57.0 99 42.4
Peaxi162Scf00362g01182 Petunia axillaris HOM05D000516 ORTHO05D000409 1.1e-06 57.0 99 42.4
BcaC07g41166 Brassica carinata HOM05D000516 ORTHO05D021923 1.4e-06 56.6 91 46.2
C08p41720 Brassica napus HOM05D000516 ORTHO05D098603 1.4e-06 56.6 91 46.2
C03p77380 Brassica napus HOM05D000516 ORTHO05D000409 1.8e-06 56.2 61 55.7
BolC3t19994H Brassica oleracea HOM05D000516 ORTHO05D000409 1.8e-06 56.2 61 55.7
BraA08t34354Z Brassica rapa HOM05D000516 ORTHO05D000409 1.8e-06 56.2 69 55.1
Sed0009067 Sechium edule HOM05D000516 ORTHO05D000409 2.3e-06 55.8 119 37.0
vmacro17412 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 2.3e-06 55.8 91 46.2
MELO3C013407.2 Cucumis melo HOM05D000516 ORTHO05D000409 4.0e-06 55.1 116 38.8
Hma1.2p1_0032F.1_g020030 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 4.0e-06 55.1 95 42.1
Atru.chr5.3173 Acer truncatum HOM05D000516 ORTHO05D000409 6.8e-06 54.3 94 41.5
Nn5g29259 Nelumbo nucifera HOM05D000516 ORTHO05D000409 6.8e-06 54.3 95 42.1
A09p58410 Brassica napus HOM05D000516 ORTHO05D021923 8.9e-06 53.9 91 46.2


User provided reference genes

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