Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24090 Arabidopsis lyrata HOM05D000886 ORTHO05D000525 6.5e-44 180.3 86 100.0
AT3G12460 Arabidopsis thaliana HOM05D000886 ORTHO05D000525 2.7e-26 121.7 58 93.1
AT3G12430 Arabidopsis thaliana HOM05D000886 ORTHO05D000525 4.1e-22 107.8 57 86.0
Carub.0003s1178 Capsella rubella HOM05D000886 ORTHO05D000525 5.9e-21 104.0 62 77.4
CARHR086960 Cardamine hirsuta HOM05D000886 ORTHO05D000525 4.0e-17 91.3 54 75.9
Carub.0003s1177 Capsella rubella HOM05D000886 ORTHO05D000525 5.2e-17 90.9 56 73.2
AT3G12440 Arabidopsis thaliana HOM05D000886 ORTHO05D000525 1.2e-16 89.7 56 80.4
Carub.0003s1179 Capsella rubella HOM05D000886 ORTHO05D000525 3.4e-16 88.2 57 73.7
AL3G24070 Arabidopsis lyrata HOM05D000886 ORTHO05D000525 2.2e-15 85.5 47 80.9
AT3G12410 Arabidopsis thaliana HOM05D000886 ORTHO05D000525 3.7e-15 84.7 56 69.6
Sp3g10600 Schrenkiella parvula HOM05D000886 ORTHO05D000525 6.3e-15 84.0 65 61.5
CARHR086940 Cardamine hirsuta HOM05D000886 ORTHO05D000525 1.8e-14 82.4 53 71.7
CARHR086950 Cardamine hirsuta HOM05D000886 ORTHO05D000525 4.1e-14 81.3 49 73.5
BolC1t05224H Brassica oleracea HOM05D000886 ORTHO05D000525 3.5e-13 78.2 53 67.9
AL3G53960 Arabidopsis lyrata HOM05D000886 ORTHO05D000525 4.5e-13 77.8 77 53.2
Sp7g04890 Schrenkiella parvula HOM05D000886 ORTHO05D000525 1.0e-12 76.6 71 54.9
Thhalv10028212m.g Eutrema salsugineum HOM05D000886 ORTHO05D000525 2.9e-12 75.1 57 66.7
AT2G36110 Arabidopsis thaliana HOM05D000886 ORTHO05D000525 5.0e-12 74.3 69 52.2
Carub.0004s1785 Capsella rubella HOM05D000886 ORTHO05D000525 1.1e-11 73.2 63 60.3
BcaC09g48236 Brassica carinata HOM05D000886 ORTHO05D000525 1.9e-11 72.4 52 67.3
Thhalv10022087m.g Eutrema salsugineum HOM05D000886 ORTHO05D000525 2.5e-11 72.0 65 55.4
Carub.0003s1180 Capsella rubella HOM05D000886 ORTHO05D000525 3.3e-11 71.6 60 56.7
Carub.0003s3542 Capsella rubella HOM05D000886 ORTHO05D000525 4.2e-11 71.2 46 71.7
AT3G12470 Arabidopsis thaliana HOM05D000886 ORTHO05D000525 7.2e-11 70.5 60 56.7
BcaC09g48243 Brassica carinata HOM05D000886 ORTHO05D000525 7.2e-11 70.5 55 61.8
Thhalv10021493m.g Eutrema salsugineum HOM05D000886 ORTHO05D000525 2.8e-10 68.6 69 52.2
BcaC09g48242 Brassica carinata HOM05D000886 ORTHO05D000525 3.6e-10 68.2 58 58.6
C01p52870 Brassica napus HOM05D000886 ORTHO05D000525 6.1e-10 67.4 49 65.3
Carub.0004s1787 Capsella rubella HOM05D000886 ORTHO05D000525 1.0e-09 66.6 66 53.0
CARHR130350 Cardamine hirsuta HOM05D000886 ORTHO05D000525 1.0e-09 66.6 68 47.1
BcaB04g21078 Brassica carinata HOM05D000886 ORTHO05D000525 3.0e-09 65.1 58 56.9
Aa31sc142G70 Aethionema arabicum HOM05D000886 ORTHO05D000525 5.2e-09 64.3 62 50.0
Aa31LG4G16820 Aethionema arabicum HOM05D000886 ORTHO05D000525 8.9e-09 63.5 59 54.2
C01p52770 Brassica napus HOM05D000886 ORTHO05D000525 8.9e-09 63.5 55 58.2
BolC1t05214H Brassica oleracea HOM05D000886 ORTHO05D000525 8.9e-09 63.5 55 58.2
PSO210G3345 Papaver somniferum HOM05D000886 ORTHO05D000525 2.0e-08 62.4 68 41.2
Aqoxy2G02688 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 2.6e-08 62.0 54 53.7
BolC1t05215H Brassica oleracea HOM05D000886 ORTHO05D000525 5.7e-08 60.8 52 55.8
AT3G12420 Arabidopsis thaliana HOM05D000886 ORTHO05D000525 7.5e-08 60.5 58 50.0
A03p37620 Brassica napus HOM05D002835 ORTHO05D003008 7.5e-08 60.5 54 57.4
BraA03t12916Z Brassica rapa HOM05D002835 ORTHO05D003008 7.5e-08 60.5 54 57.4
Rhsim04G0240900 Rhododendron simsii HOM05D000886 ORTHO05D000525 7.5e-08 60.5 62 40.3
Thhalv10017696m.g Eutrema salsugineum HOM05D000886 ORTHO05D000525 9.8e-08 60.1 54 53.7
AL3G24080 Arabidopsis lyrata HOM05D000886 ORTHO05D000525 1.3e-07 59.7 58 50.0
Hma1.2p1_0078F.1_g039890 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 3.7e-07 58.2 66 39.4
Rhsim04G0240800 Rhododendron simsii HOM05D000886 ORTHO05D000525 3.7e-07 58.2 62 38.7
BcaB04g18681 Brassica carinata HOM05D000886 ORTHO05D000525 4.9e-07 57.8 59 52.5
BcaC01g04049 Brassica carinata HOM05D000886 ORTHO05D000525 4.9e-07 57.8 59 52.5
C03p45610 Brassica napus HOM05D002835 ORTHO05D003008 4.9e-07 57.8 59 52.5
Lj6P561T19 Lonicera japonica HOM05D000886 ORTHO05D000525 1.4e-06 56.2 65 46.2
Manes.15G001700 Manihot esculenta HOM05D000886 ORTHO05D000525 1.4e-06 56.2 65 47.7
Thecc.04G304300 Theobroma cacao HOM05D000886 ORTHO05D000525 3.1e-06 55.1 59 45.8
Aqoxy2G02689 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 4.1e-06 54.7 53 45.3
THA.LOC104821485 Tarenaya hassleriana HOM05D000886 ORTHO05D000525 4.1e-06 54.7 61 44.3
CARHR086970 Cardamine hirsuta HOM05D000886 ORTHO05D000525 5.4e-06 54.3 60 48.3
TPR.G33857 Trifolium pratense HOM05D000886 ORTHO05D000525 9.2e-06 53.5 59 44.1


User provided reference genes

Program Settings