Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 3.5e-152 541.6 274 100.0
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 2.8e-141 505.4 274 93.8
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 4.5e-139 498.0 274 92.0
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 9.7e-134 480.3 274 88.0
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.7e-125 451.8 275 84.0
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.4e-124 449.1 277 84.5
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-122 443.0 275 82.9
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 8.5e-122 440.7 275 81.5
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 8.5e-122 440.7 275 81.5
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 4.2e-121 438.3 275 82.9
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-120 436.4 275 81.8
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 4.1e-116 421.8 292 76.4
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 2.4e-108 396.0 279 79.6
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 2.4e-108 396.0 279 79.6
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 2.4e-108 396.0 279 79.6
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 2.0e-107 392.9 280 79.6
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 3.5e-107 392.1 280 79.6
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 2.4e-100 369.4 287 70.7
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.7e-98 363.2 290 70.3
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 4.6e-67 258.8 296 55.7
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 4.7e-64 248.8 301 52.5
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 8.1e-64 248.1 289 57.1
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.8e-63 246.9 301 54.5
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 4.0e-63 245.7 302 54.0
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 5.2e-63 245.4 302 54.0
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.2e-62 244.2 301 54.2
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 1.3e-61 240.7 290 54.5
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.9e-60 236.9 308 51.9
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-59 233.8 300 52.3
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-56 223.8 274 54.0
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 5.4e-52 208.8 302 46.7
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 2.1e-51 206.8 269 52.0
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 2.7e-51 206.5 150 76.7
BcaC09g51982 Brassica carinata HOM05D008873 ORTHO05D005982 7.1e-36 155.2 100 79.0
C01p06990 Brassica napus HOM05D008873 ORTHO05D005982 1.8e-34 150.6 108 72.2
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 3.1e-31 139.8 277 38.6
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 3.2e-28 129.8 168 51.8
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 4.3e-25 119.4 331 31.7
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 3.1e-23 113.2 290 30.0
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 7.6e-22 108.6 355 29.9
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-21 107.8 334 27.8
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 1.7e-21 107.5 297 31.3
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 2.9e-21 106.7 289 30.4
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 3.8e-21 106.3 343 30.6
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 5.0e-21 105.9 333 30.0
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 8.5e-21 105.1 327 30.3
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 1.9e-20 104.0 331 29.0
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.9e-20 104.0 333 28.8
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.2e-19 101.3 334 28.4
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.2e-19 101.3 341 29.6
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.6e-19 100.9 326 29.1
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.1e-19 100.5 344 29.4
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.7e-19 100.1 334 29.3
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.6e-19 99.4 338 28.4
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.3e-18 97.1 320 30.9
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 2.5e-17 93.6 305 29.5
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 4.3e-17 92.8 343 27.4
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 4.3e-17 92.8 306 28.1
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 5.7e-17 92.4 327 30.6
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.3e-16 91.3 288 31.6
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.3e-16 91.3 303 29.0
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 2.2e-16 90.5 287 28.2
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 3.1e-15 86.7 296 26.7
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 3.1e-15 86.7 341 28.4
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 6.9e-15 85.5 330 27.3
BolC3t12886H Brassica oleracea HOM05D008873 ORTHO05D005982 6.9e-15 85.5 87 58.6
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 1.2e-14 84.7 307 26.1
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.0e-14 84.0 277 30.7
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 2.6e-14 83.6 121 43.8
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.4e-14 83.2 276 30.4
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 4.5e-14 82.8 329 27.1
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 4.5e-14 82.8 314 26.4
BolC1t05243H Brassica oleracea HOM05D008873 ORTHO05D005982 5.9e-14 82.4 62 69.4
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 7.7e-14 82.0 316 25.3
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 7.7e-14 82.0 294 28.6
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.0e-13 81.6 229 30.6
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 1.0e-13 81.6 319 26.6
C03p03440 Brassica napus HOM05D008873 ORTHO05D005982 2.9e-13 80.1 84 58.3
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 8.5e-13 78.6 115 40.9
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.9e-12 77.4 333 27.3
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.5e-12 77.0 293 29.4
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.5e-12 77.0 293 29.4
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 2.5e-12 77.0 313 26.2
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 3.2e-12 76.6 342 25.4
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 3.2e-12 76.6 287 25.4
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 4.2e-12 76.3 136 32.4
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 4.2e-12 76.3 277 28.9
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 5.5e-12 75.9 301 26.6
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 5.5e-12 75.9 228 30.7
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 7.2e-12 75.5 293 28.3
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.2e-11 74.7 280 25.4
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 2.1e-11 73.9 210 30.5
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 2.1e-11 73.9 101 42.6
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 2.7e-11 73.6 244 29.9
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 4.7e-11 72.8 280 28.2
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 6.1e-11 72.4 327 25.7
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 7.9e-11 72.0 110 38.2
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.0e-10 71.6 220 31.4
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.3e-10 70.5 108 38.0
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.3e-10 70.5 178 33.7
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 2.3e-10 70.5 102 42.2
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 2.3e-10 70.5 300 28.0
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 3.9e-10 69.7 108 37.0
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 3.9e-10 69.7 108 37.0
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 8.8e-10 68.6 290 25.5
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.1e-09 68.2 271 28.8
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.5e-09 67.8 212 31.1
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 2.0e-09 67.4 221 29.9
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 3.3e-09 66.6 316 27.8
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 9.7e-09 65.1 320 27.8
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 9.7e-09 65.1 123 39.0
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.7e-08 64.3 110 39.1
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 1.7e-08 64.3 137 39.4
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.2e-08 63.9 321 26.2
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.8e-08 62.8 108 38.9
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 6.3e-08 62.4 279 26.9
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 6.3e-08 62.4 122 38.5
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 6.3e-08 62.4 122 38.5
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.1e-07 61.6 153 30.1
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.1e-07 61.6 109 40.4
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.4e-07 61.2 119 35.3
Aa31LG1G17760 Aethionema arabicum HOM05D003662 ORTHO05D001824 3.1e-07 60.1 123 29.3
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 4.1e-07 59.7 95 41.1
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 5.3e-07 59.3 185 30.3
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 1.2e-06 58.2 192 28.6
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 1.2e-06 58.2 109 38.5
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 1.5e-06 57.8 232 26.7
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 1.5e-06 57.8 113 35.4
CDE04G1684 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 2.0e-06 57.4 127 31.5
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.0e-06 57.4 115 32.2
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 3.4e-06 56.6 105 39.0
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 4.5e-06 56.2 231 32.0
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 4.5e-06 56.2 252 27.4
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 4.5e-06 56.2 106 37.7
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 4.5e-06 56.2 271 28.4
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 4.5e-06 56.2 114 36.8
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 4.5e-06 56.2 113 32.7
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 5.9e-06 55.8 122 33.6
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 5.9e-06 55.8 163 30.7
BcaB07g29728 Brassica carinata HOM05D003662 ORTHO05D001824 7.7e-06 55.5 116 31.0


User provided reference genes

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