Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1974.5 1013 100.0
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1911.3 1014 96.8
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1884.8 1023 95.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1819.3 1015 90.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1796.2 1020 91.1
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1774.6 1018 89.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1770.7 1016 89.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1760.7 1018 88.6
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1756.9 1019 88.6
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1714.9 1025 86.7
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1714.5 1025 86.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1713.0 1025 86.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1699.5 1023 85.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1661.0 1019 84.2
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1660.6 1023 84.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1656.7 1015 84.2
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1639.8 1017 83.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1637.9 1035 82.1
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1571.6 1027 79.6
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1565.8 1035 79.4
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1437.2 906 81.5
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1423.3 984 74.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1412.9 1028 71.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1409.0 1027 72.2
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1407.5 1028 71.8
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1406.7 1032 71.6
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1406.0 1028 71.7
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1404.8 1007 72.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1029 70.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1394.8 1007 72.3
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1394.0 1007 72.4
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1389.0 1018 71.4
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1007 72.0
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1387.5 1018 71.4
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1386.3 1016 71.6
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1385.9 1028 71.3
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1380.9 1030 70.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1380.2 1006 71.6
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1374.8 1033 70.7
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1374.4 1025 71.1
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1371.7 1030 69.7
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1368.2 1005 70.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1368.2 1028 69.7
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1366.3 1030 69.5
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1361.7 998 70.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 971 72.5
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 1012 70.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1355.5 1044 69.4
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1355.1 1008 71.2
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 1005 70.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1354.0 1022 70.5
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1349.7 1034 68.8
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1349.3 1027 70.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1008 70.6
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1012 69.9
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1034 68.8
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1051 68.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1344.3 1013 70.2
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1343.9 1035 69.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 1040 68.6
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 1034 69.0
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1031 68.7
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1340.5 1012 69.6
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1005 69.8
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1034 68.7
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1336.6 1051 66.9
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 1017 68.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 1009 69.8
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1002 69.3
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 1027 67.9
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1330.9 1063 67.3
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 1030 68.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1327.8 1011 68.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1326.2 1012 69.7
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1323.1 1050 67.0
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1318.9 1014 69.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1318.9 1008 69.0
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1033 68.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1317.4 1005 69.0
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1315.1 1015 68.4
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1016 67.5
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1016 67.5
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1310.8 1011 68.2
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1310.0 1020 68.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1306.6 1010 67.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1303.9 1003 69.0
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1302.7 1030 67.7
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1029 68.2
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1300.0 1003 68.8
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1011 66.9
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1295.0 1005 68.7
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1293.5 1006 68.1
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1292.7 1052 66.4
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1291.2 1053 66.5
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 1005 67.1
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1285.4 1009 67.0
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1285.4 933 71.1
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 1016 66.6
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1280.0 1018 67.5
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1272.7 998 66.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1271.1 1033 65.5
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1270.8 1005 66.2
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 1021 66.9
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1022 65.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1263.8 1035 65.0
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1263.8 1035 64.8
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1252.3 1033 65.0
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1248.4 978 67.1
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1239.2 999 66.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1237.6 931 70.9
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1233.8 1032 63.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1227.6 897 73.0
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1224.9 992 65.9
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1222.6 897 72.6
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1214.9 1011 64.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1206.8 1039 62.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1198.7 1025 62.6
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1198.7 1041 62.8
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1163.3 1001 63.1
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1145.6 1004 61.7
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1142.1 932 65.6
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1136.3 1020 59.6
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1111.7 1017 61.5
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1107.4 1009 60.1
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1104.7 1026 60.5
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1087.8 1050 58.3
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1086.2 1058 57.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1080.5 985 59.1
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 8.7e-289 997.3 1004 56.8
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.3e-281 972.6 899 58.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 6.1e-274 948.0 1044 54.8
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.3e-273 946.8 809 64.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.0e-265 920.6 812 61.1
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.3e-252 877.1 1000 50.4
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.0e-249 865.5 969 49.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 7.5e-248 861.3 1026 49.2
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.5e-245 852.4 967 49.6
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.0e-244 850.9 738 65.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.5e-240 837.0 720 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.3e-225 786.6 967 46.5
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 9.2e-222 774.6 819 51.2
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 3.5e-213 746.1 798 51.8
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.3e-203 711.8 905 46.7
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 3.6e-194 682.9 405 85.2
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.6e-192 675.2 723 58.1
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.2e-190 669.8 654 57.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.6e-176 623.6 832 48.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.2e-167 594.0 947 40.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.2e-165 588.2 629 54.4
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.5e-147 528.1 610 50.8
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.7e-147 526.2 607 51.4
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 6.5e-143 512.7 653 49.0
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 7.0e-137 492.7 1105 34.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.5e-110 404.4 637 42.9
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.4e-105 386.7 539 44.9
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.1e-100 370.9 284 70.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.0e-83 315.1 244 70.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.2e-80 305.8 245 65.7
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.1e-78 299.3 316 55.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 4.5e-67 260.8 252 56.3
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 6.4e-66 256.9 625 33.0
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.1e-61 241.9 160 81.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-59 236.1 155 82.6
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 6.2e-53 213.8 1098 24.0
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.0e-51 208.8 215 51.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 4.2e-49 201.1 910 24.4
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.3e-45 187.2 152 57.9
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.7e-42 179.1 212 43.4
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.8e-31 142.5 166 50.0
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.8e-28 132.5 147 46.9
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.1e-28 131.3 130 51.5
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.8e-21 108.6 114 48.2
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.0e-20 104.0 95 50.5
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.0e-20 104.0 95 50.5
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.0e-14 85.9 63 71.4
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 2.2e-13 82.4 60 70.0
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.5e-11 74.7 64 56.2


User provided reference genes

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