Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 6.0e-132 474.2 236 100.0
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 1.8e-128 462.6 237 97.9
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 4.0e-120 434.9 238 92.4
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 1.1e-112 410.2 241 88.0
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 3.1e-112 408.7 236 87.3
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.2e-111 406.8 238 86.6
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.2e-111 406.8 238 86.6
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 1.2e-111 406.8 238 87.0
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 2.0e-111 406.0 238 86.6
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 7.8e-108 394.0 241 83.4
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 3.0e-107 392.1 241 83.4
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.0e-99 367.1 236 79.7
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.9e-98 362.8 217 81.6
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 7.4e-98 360.9 236 80.1
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.3e-94 350.1 222 76.1
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.2e-94 349.4 245 73.9
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 6.0e-92 341.3 186 85.5
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 7.9e-92 340.9 186 84.9
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 1.8e-91 339.7 186 84.9
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 2.3e-91 339.3 186 84.9
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 3.9e-91 338.6 237 71.7
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 5.1e-91 338.2 186 84.9
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 3.3e-90 335.5 186 83.9
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 9.6e-90 334.0 240 70.0
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 9.6e-90 334.0 237 71.3
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 3.7e-89 332.0 237 70.9
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.1e-88 328.9 239 68.6
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 6.9e-88 327.8 238 67.6
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 9.0e-88 327.4 238 67.6
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 9.0e-88 327.4 238 67.6
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 2.0e-87 326.2 239 66.9
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 3.4e-87 325.5 242 66.9
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 7.6e-87 324.3 243 67.5
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 1.7e-86 323.2 237 68.4
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 1.7e-86 323.2 240 69.6
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 2.2e-86 322.8 238 68.9
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 5.0e-86 321.6 215 72.1
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 5.0e-86 321.6 236 67.8
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 5.0e-86 321.6 236 67.4
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 8.4e-86 320.9 238 69.3
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 1.1e-85 320.5 244 66.0
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.4e-85 320.1 239 66.1
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.4e-85 320.1 241 68.9
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.9e-85 319.7 243 64.6
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.9e-85 319.7 234 67.5
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 3.2e-85 318.9 228 69.7
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.2e-85 318.5 242 68.6
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 4.2e-85 318.5 229 67.2
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 4.2e-85 318.5 229 66.4
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 5.5e-85 318.2 242 68.2
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.2e-84 317.0 203 79.8
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 2.1e-84 316.2 237 67.1
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.7e-84 315.8 242 67.8
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 6.1e-84 314.7 218 69.3
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 7.9e-84 314.3 231 68.0
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 7.9e-84 314.3 239 65.3
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 1.0e-83 313.9 229 68.1
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 1.3e-83 313.5 245 64.9
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.8e-83 313.2 242 67.4
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 2.3e-83 312.8 241 66.8
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.3e-83 312.8 218 67.9
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.3e-83 312.8 229 68.1
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 3.0e-83 312.4 237 64.6
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 3.9e-83 312.0 215 69.8
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 6.7e-83 311.2 227 67.4
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 1.5e-82 310.1 229 66.4
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 1.5e-82 310.1 237 62.9
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.5e-82 309.3 236 65.7
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 2.5e-82 309.3 236 65.3
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 3.3e-82 308.9 223 68.2
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 5.7e-82 308.1 186 80.6
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 5.7e-82 308.1 243 65.8
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 5.7e-82 308.1 245 64.1
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 7.4e-82 307.8 262 63.4
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.7e-82 307.4 260 63.8
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 9.7e-82 307.4 236 65.3
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 1.3e-81 307.0 237 65.8
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.3e-81 307.0 241 65.6
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 4.8e-81 305.1 227 65.6
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 6.3e-81 304.7 226 67.3
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 8.2e-81 304.3 238 64.3
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 8.2e-81 304.3 239 65.3
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 2.4e-80 302.8 227 67.8
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 5.3e-80 301.6 227 66.5
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 5.3e-80 301.6 219 68.5
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.2e-79 300.4 237 64.1
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.5e-79 300.1 214 65.4
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 2.0e-79 299.7 217 65.4
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 2.6e-79 299.3 214 65.0
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 3.4e-79 298.9 186 74.2
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 3.4e-79 298.9 199 74.4
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 5.9e-79 298.1 186 74.7
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 5.9e-79 298.1 224 63.4
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 7.7e-79 297.7 224 67.0
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 7.7e-79 297.7 239 62.3
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 1.7e-78 296.6 218 66.5
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.9e-78 295.8 215 65.6
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 5.0e-78 295.0 237 62.9
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 5.0e-78 295.0 241 63.1
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.9e-77 293.1 246 59.3
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 1.6e-76 290.0 236 61.9
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.0e-75 287.3 251 60.6
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.4e-75 287.0 236 63.6
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 1.4e-75 287.0 241 62.2
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 8.8e-75 284.3 210 65.2
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.5e-74 283.5 237 63.3
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.0e-74 283.1 197 67.5
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 1.2e-71 273.9 219 63.5
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 2.0e-71 273.1 235 57.4
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.0e-70 270.8 186 64.5
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 5.0e-70 268.5 240 60.4
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 2.1e-68 263.1 160 75.6
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.9e-68 261.2 163 74.2
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 2.3e-67 259.6 184 60.3
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 5.1e-67 258.5 211 65.4
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 1.7e-65 253.4 294 51.4
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 8.2e-65 251.1 185 66.5
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 5.9e-63 245.0 223 53.4
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 4.4e-58 228.8 183 57.9
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 3.1e-56 222.6 346 40.5
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 1.0e-54 217.6 203 52.2
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 4.2e-53 212.2 133 72.9
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 5.5e-45 185.3 129 62.8
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 3.5e-39 166.0 104 71.2
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 7.7e-39 164.9 104 75.0
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 9.5e-37 157.9 124 66.1
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 5.4e-24 115.5 87 64.4
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 1.5e-21 107.5 166 39.2
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.6e-20 102.8 186 25.8
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 5.8e-18 95.5 188 27.7
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.8e-18 95.5 184 25.0
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 7.5e-18 95.1 183 30.6
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 7.5e-18 95.1 180 27.8
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 6.4e-17 92.0 180 24.4
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 6.4e-17 92.0 183 26.8
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 8.3e-17 91.7 63 66.7
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 8.3e-17 91.7 180 26.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 2.4e-16 90.1 164 28.0
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 5.4e-16 89.0 183 25.7
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 1.6e-15 87.4 186 26.3
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 7.8e-15 85.1 240 26.2
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.0e-14 84.7 186 26.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 8.6e-14 81.6 184 23.9
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.1e-13 81.3 183 24.6
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.2e-12 77.8 234 23.1
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.1e-12 77.0 185 24.3
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 8.1e-12 75.1 231 26.4
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 6.8e-11 72.0 186 24.2
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 6.8e-11 72.0 165 26.7
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.2e-10 71.2 41 78.0
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.2e-08 63.2 40 70.0
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 2.1e-07 60.5 183 23.5


User provided reference genes

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