Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G17720 Arabidopsis lyrata HOM05D003528 ORTHO05D015900 0.0e+00 2000.7 1006 100.0
AT3G66652 Arabidopsis thaliana HOM05D003528 ORTHO05D015900 0.0e+00 1578.1 1017 81.6
Carub.0003s0612 Capsella rubella HOM05D003528 ORTHO05D015900 0.0e+00 1384.0 1032 73.3
CARHR081190 Cardamine hirsuta HOM05D003528 ORTHO05D015900 0.0e+00 1217.6 1050 66.0
Sp3g05600 Schrenkiella parvula HOM05D003528 ORTHO05D015900 0.0e+00 1086.2 1045 61.0
Thhalv10019983m.g Eutrema salsugineum HOM05D003528 ORTHO05D015900 1.4e-294 1016.5 1042 58.6
A03p34760 Brassica napus HOM05D003528 ORTHO05D015900 1.3e-252 877.1 1041 53.4
BolC3t16504H Brassica oleracea HOM05D003528 ORTHO05D015900 1.4e-246 857.1 1053 52.2
C03p42300 Brassica napus HOM05D003528 ORTHO05D015900 7.9e-242 841.3 1067 51.7
BraA03t12657Z Brassica rapa HOM05D003528 ORTHO05D015900 6.3e-239 831.6 1049 51.9
THA.LOC104827097 Tarenaya hassleriana HOM05D003528 ORTHO05D015900 4.8e-130 469.9 1120 36.2
PGSC0003DMG400004621 Solanum tuberosum HOM05D007976 ORTHO05D002678 1.6e-21 109.4 417 29.3
COL.COLO4_34619 Corchorus olitorius HOM05D007976 ORTHO05D002678 1.8e-20 105.9 571 26.8
Potri.010G145150 Populus trichocarpa HOM05D007976 ORTHO05D002678 1.5e-19 102.8 1238 23.5
Sopen12g033960 Solanum pennellii HOM05D007976 ORTHO05D002678 1.5e-19 102.8 488 28.3
Nitab4.5_0002150g0130 Nicotiana tabacum HOM05D007976 ORTHO05D002678 2.0e-19 102.4 254 33.9
GSVIVG01034996001 Vitis vinifera HOM05D007976 ORTHO05D002678 2.6e-19 102.1 527 25.8
TWI09G1545 Tripterygium wilfordii HOM05D007976 ORTHO05D002678 2.9e-18 98.6 766 24.3
Cfa015318 Carpinus fangiana HOM05D007976 ORTHO05D002678 3.2e-17 95.1 1281 23.7
Cpa.g.sc9.60 Carica papaya HOM05D007976 ORTHO05D002678 2.1e-16 92.4 1292 22.9
Solyc12g099280.2 Solanum lycopersicum HOM05D007976 ORTHO05D002678 2.1e-16 92.4 651 25.8
MD16G1154500 Malus domestica HOM05D007976 ORTHO05D002678 2.7e-16 92.0 738 25.9
PSO357G0305 Papaver somniferum HOM05D007976 ORTHO05D002678 2.7e-16 92.0 309 30.1
ECA246G2174 Erigeron canadensis HOM05D007976 ORTHO05D002678 1.0e-15 90.1 329 29.8
Cc03_g00860 Coffea canephora HOM05D007976 ORTHO05D002678 3.0e-15 88.6 526 26.8
CAN.G484.60 Capsicum annuum HOM05D007976 ORTHO05D002678 3.9e-15 88.2 331 29.3
Ca_21441_v3 Cicer arietinum L. HOM05D007976 ORTHO05D002678 6.7e-15 87.4 385 27.8
Nn4g25570 Nelumbo nucifera HOM05D007976 ORTHO05D002678 6.7e-15 87.4 1124 23.5
FAN12G1581 Fragaria x ananassa HOM05D007976 ORTHO05D002678 8.7e-15 87.0 179 31.8
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.5e-14 86.3 185 30.8
Aqoxy5G03581 Aquilegia oxysepala HOM05D007976 ORTHO05D002678 2.5e-14 85.5 476 27.1
Gohir.A13G184900 Gossypium hirsutum HOM05D003779 ORTHO05D002678 3.3e-14 85.1 163 31.3
Gorai.013G217400 Gossypium raimondii HOM05D003779 ORTHO05D002678 3.3e-14 85.1 163 31.3
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 4.3e-14 84.7 54 63.0
ATR0739G197 Amborella trichopoda HOM05D003779 ORTHO05D002678 5.7e-14 84.3 234 27.4
Gorai.001G031400 Gossypium raimondii HOM05D003779 ORTHO05D002678 7.4e-14 84.0 185 30.3
CiPaw.15G174200 Carya illinoinensis HOM05D003779 ORTHO05D002678 9.7e-14 83.6 114 38.6
Atru.chr7.134 Acer truncatum HOM05D003779 ORTHO05D002678 1.3e-13 83.2 165 30.9
Manes.06G037900 Manihot esculenta HOM05D003779 ORTHO05D002678 1.3e-13 83.2 162 30.2
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 1.3e-13 83.2 96 40.6
CiPaw.16G114900 Carya illinoinensis HOM05D003779 ORTHO05D002678 1.7e-13 82.8 95 40.0
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.7e-13 82.8 163 30.7
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 1.7e-13 82.8 52 65.4
Ciclev10007258m.g Citrus clementina HOM05D003779 ORTHO05D002678 2.2e-13 82.4 211 28.0
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 2.2e-13 82.4 152 35.5
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 2.2e-13 82.4 152 35.5
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.2e-13 82.4 185 30.3
Medtr4g122070 Medicago truncatula HOM05D007976 ORTHO05D002678 2.2e-13 82.4 1090 24.2
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 2.8e-13 82.0 52 61.5
Nitab4.5_0008534g0010 Nicotiana tabacum HOM05D003779 ORTHO05D002678 2.8e-13 82.0 52 65.4
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 3.7e-13 81.6 52 65.4
THA.LOC104817824 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 3.7e-13 81.6 55 63.6
TWI34G0110 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 3.7e-13 81.6 52 63.5
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 3.7e-13 81.6 52 63.5
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 4.8e-13 81.3 185 29.7
HanXRQChr05g0146071 Helianthus annuus HOM05D007976 ORTHO05D002678 4.8e-13 81.3 329 27.7
MBI15_g10629_MAGBIO Magnolia biondii HOM05D003779 ORTHO05D002678 4.8e-13 81.3 118 34.7
MD13G1154900 Malus domestica HOM05D007976 ORTHO05D002678 4.8e-13 81.3 1212 22.9
PGR102G2779 Punica granatum HOM05D003779 ORTHO05D002678 4.8e-13 81.3 52 63.5
Haze_19235 Corylus avellana HOM05D003779 ORTHO05D002678 6.3e-13 80.9 52 63.5
FAN26G3236 Fragaria x ananassa HOM05D003779 ORTHO05D002678 6.3e-13 80.9 52 61.5
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 8.2e-13 80.5 52 63.5
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 8.2e-13 80.5 185 30.8
MD02G1009900 Malus domestica HOM05D003779 ORTHO05D002678 8.2e-13 80.5 52 65.4
Duzib212G0249 Durio zibethinus HOM05D007976 ORTHO05D002678 1.1e-12 80.1 1319 23.6
PSO017G3118 Papaver somniferum HOM05D003779 ORTHO05D002678 1.1e-12 80.1 54 59.3
Thecc.04G300200 Theobroma cacao HOM05D007976 ORTHO05D002678 1.4e-12 79.7 1302 23.2
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 1.8e-12 79.3 96 39.6
Phvul.003G157600 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 1.8e-12 79.3 164 28.7
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.8e-12 79.3 52 61.5
Rhsim01G0045400 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.8e-12 79.3 52 61.5
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 1.8e-12 79.3 52 63.5
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.8e-12 79.3 55 63.6
HPP92_016075 Vanilla planifolia HOM05D003779 ORTHO05D002678 1.8e-12 79.3 139 34.5
Actinidia04285 Actinidia chinensis HOM05D003779 ORTHO05D002678 2.4e-12 79.0 52 63.5
Phvul.009G194000 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 2.4e-12 79.0 52 61.5
Glyma.15G205600 Glycine max HOM05D003779 ORTHO05D002678 3.1e-12 78.6 52 61.5
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 3.1e-12 78.6 52 63.5
Cpa.g.sc46.127 Carica papaya HOM05D003779 ORTHO05D002678 4.1e-12 78.2 52 61.5
QL02p092676 Quercus lobata HOM05D003779 ORTHO05D002678 4.1e-12 78.2 52 59.6
VMungo1309G0106 Vigna mungo HOM05D003779 ORTHO05D002678 4.1e-12 78.2 52 61.5
Phvul.006G117800 Phaseolus vulgaris HOM05D007976 ORTHO05D002678 5.3e-12 77.8 471 25.9
QL06p012216 Quercus lobata HOM05D007976 ORTHO05D002678 5.3e-12 77.8 1064 23.7
Cfa020847 Carpinus fangiana HOM05D003779 ORTHO05D002678 6.9e-12 77.4 52 61.5
Ca_14533_v3 Cicer arietinum L. HOM05D003779 ORTHO05D002678 6.9e-12 77.4 52 59.6
Gorai.011G199900 Gossypium raimondii HOM05D007976 ORTHO05D002678 6.9e-12 77.4 501 23.6
CSS0008137 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 9.1e-12 77.0 52 57.7
AUR62039282 Chenopodium quinoa HOM05D007976 ORTHO05D002678 9.1e-12 77.0 165 31.5
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 9.1e-12 77.0 54 57.4
arahy.Tifrunner.gnm1.ann1.MXR4WM Arachis hypogaea HOM05D003779 ORTHO05D002678 1.2e-11 76.6 52 59.6
arahy.Tifrunner.gnm1.ann1.Y7PKX5 Arachis hypogaea HOM05D003779 ORTHO05D002678 1.2e-11 76.6 52 59.6
AUR62039744 Chenopodium quinoa HOM05D003779 ORTHO05D002678 1.2e-11 76.6 52 59.6
Lalb_Chr08g0234021 Lupinus albus HOM05D003779 ORTHO05D002678 1.2e-11 76.6 52 59.6
SGA_v2.0_scaffold387G50508 Striga asiatica HOM05D003779 ORTHO05D002678 1.2e-11 76.6 120 38.3
VMungo1215G0704 Vigna mungo HOM05D003779 ORTHO05D002678 1.2e-11 76.6 97 37.1
BolC3t13903H Brassica oleracea HOM05D003779 ORTHO05D002678 1.5e-11 76.3 73 49.3
MELO3C010242.2 Cucumis melo HOM05D003779 ORTHO05D002678 1.5e-11 76.3 57 56.1
Glyma.09G097600 Glycine max HOM05D003779 ORTHO05D002678 1.5e-11 76.3 52 59.6
Os03g0308900 Oryza sativa ssp. japonica HOM05D003779 ORTHO05D002678 2.0e-11 75.9 483 24.6
SHI00143 Sapria himalayana HOM05D003779 ORTHO05D002678 2.0e-11 75.9 166 33.1
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 2.6e-11 75.5 52 59.6
DCAR_020882 Daucus carota HOM05D003779 ORTHO05D002678 2.6e-11 75.5 73 47.9
Lalb_Chr08g0233951 Lupinus albus HOM05D003779 ORTHO05D002678 2.6e-11 75.5 117 32.5
Dinv15173 Davidia involucrata HOM05D007976 ORTHO05D002678 3.4e-11 75.1 1304 23.5
Lj9C714G7 Lonicera japonica HOM05D003779 ORTHO05D002678 3.4e-11 75.1 119 31.9
Manes.03G204700 Manihot esculenta HOM05D007976 ORTHO05D002678 3.4e-11 75.1 1145 22.5
Mapoly0032s0123 Marchantia polymorpha HOM05D003779 ORTHO05D002678 3.4e-11 75.1 54 55.6
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 3.4e-11 75.1 209 27.8
HanXRQChr12g0357201 Helianthus annuus HOM05D003779 ORTHO05D002678 4.5e-11 74.7 52 57.7
Lj3A831T87 Lonicera japonica HOM05D007976 ORTHO05D002678 4.5e-11 74.7 204 30.9
Lj6g0022686 Lotus japonicus HOM05D003779 ORTHO05D002678 4.5e-11 74.7 52 57.7
Oeu050477.1 Olea europaea HOM05D003779 ORTHO05D002678 4.5e-11 74.7 52 59.6
Sed0025790 Sechium edule HOM05D003779 ORTHO05D002678 4.5e-11 74.7 52 57.7
Potri.006G187400 Populus trichocarpa HOM05D003779 ORTHO05D002678 5.9e-11 74.3 205 27.8
Sabra06G0143300 Salix brachista HOM05D003779 ORTHO05D002678 5.9e-11 74.3 42 69.0
SalBow1G6151 Salvia bowleyana HOM05D003779 ORTHO05D002678 5.9e-11 74.3 143 33.6
HPP92_020551 Vanilla planifolia HOM05D003779 ORTHO05D002678 5.9e-11 74.3 50 56.0
CDE05G1362 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 7.7e-11 73.9 52 53.8
Sabra06G0142300 Salix brachista HOM05D003779 ORTHO05D002678 7.7e-11 73.9 42 69.0
Sed0010991 Sechium edule HOM05D003779 ORTHO05D002678 7.7e-11 73.9 231 26.0
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 1.3e-10 73.2 121 34.7
Pp3c7_2840 Physcomitrium patens HOM05D003779 ORTHO05D002678 1.3e-10 73.2 54 50.0
Ah.14g078430 Amaranthus hybridus HOM05D003779 ORTHO05D002678 1.7e-10 72.8 280 26.4
Dinv17810 Davidia involucrata HOM05D003779 ORTHO05D002678 2.9e-10 72.0 74 44.6
PGR031G2802 Punica granatum HOM05D007976 ORTHO05D002678 2.9e-10 72.0 207 32.4
Haze_01305 Corylus avellana HOM05D007976 ORTHO05D002678 5.0e-10 71.2 1081 22.9
DCAR_019379 Daucus carota HOM05D003779 ORTHO05D002678 5.0e-10 71.2 67 50.7
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 5.0e-10 71.2 122 37.7
Potri.018G110100 Populus trichocarpa HOM05D003779 ORTHO05D002678 5.0e-10 71.2 195 27.7
SMO115G0353 Selaginella moellendorffii HOM05D003779 ORTHO05D002678 6.5e-10 70.9 57 50.9
MBI18_g32027_MAGBIO Magnolia biondii HOM05D007976 ORTHO05D002678 8.5e-10 70.5 624 23.6
Pp3c11_22610 Physcomitrium patens HOM05D003779 ORTHO05D002678 1.1e-09 70.1 93 34.4
CDE02G3961 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 1.9e-09 69.3 54 51.9
PSO170G4144 Papaver somniferum HOM05D007976 ORTHO05D002678 1.9e-09 69.3 1093 23.3
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.9e-09 69.3 43 62.8
Sabra18G0093100 Salix brachista HOM05D003779 ORTHO05D002678 1.9e-09 69.3 201 26.9
SHI02625 Sapria himalayana HOM05D003779 ORTHO05D002678 2.5e-09 68.9 44 63.6
TPR.G829 Trifolium pratense HOM05D007976 ORTHO05D002678 2.5e-09 68.9 90 38.9
Prupe.1G117900 Prunus persica HOM05D007976 ORTHO05D002678 4.2e-09 68.2 1254 22.5
RcHm_v2.0_Chr4g0425101 Rosa chinensis HOM05D007976 ORTHO05D002678 4.2e-09 68.2 762 22.2
Zm00001eb215820 Zea mays HOM05D003779 ORTHO05D002678 4.2e-09 68.2 53 52.8
Zm00001eb055800 Zea mays HOM05D003779 ORTHO05D002678 5.5e-09 67.8 53 52.8
AagrBONN_evm.TU.Sc2ySwM_344.140 Anthoceros agrestis HOM05D003779 ORTHO05D002678 1.6e-08 66.2 51 49.0
DCAR_015453 Daucus carota HOM05D003779 ORTHO05D002678 2.1e-08 65.9 48 54.2
arahy.Tifrunner.gnm1.ann1.M1AC1B Arachis hypogaea HOM05D007976 ORTHO05D002678 2.7e-08 65.5 984 22.7
SGA_v2.0_scaffold21G09645 Striga asiatica HOM05D003779 ORTHO05D002678 3.6e-08 65.1 84 38.1
TPR.G35880 Trifolium pratense HOM05D003779 ORTHO05D002678 3.6e-08 65.1 343 23.9
SGA_v2.0_scaffold206G41814 Striga asiatica HOM05D003779 ORTHO05D002678 4.7e-08 64.7 313 24.0
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 1.0e-07 63.5 357 24.1
Sabra10G0112100 Salix brachista HOM05D007976 ORTHO05D002678 1.0e-07 63.5 1284 22.6
CSS0029168 Camellia sinensis var. sinensis HOM05D007976 ORTHO05D002678 3.0e-07 62.0 1293 22.1
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.9e-07 61.6 699 23.2
Peaxi162Scf00120g00024 Petunia axillaris HOM05D007976 ORTHO05D002678 3.9e-07 61.6 1215 21.8
SalBow1G3877 Salvia bowleyana HOM05D003779 ORTHO05D002678 3.9e-07 61.6 324 23.1
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 3.9e-07 61.6 296 26.7
arahy.Tifrunner.gnm1.ann1.Q2FUX7 Arachis hypogaea HOM05D007976 ORTHO05D002678 5.1e-07 61.2 1005 22.5
Eucgr.C00363 Eucalyptus grandis HOM05D003779 ORTHO05D002678 5.1e-07 61.2 439 25.3
Rhsim04G0238500 Rhododendron simsii HOM05D007976 ORTHO05D002678 5.1e-07 61.2 653 23.7
Psat5g106280 Pisum sativum HOM05D000515 ORTHO05D002678 6.7e-07 60.8 91 39.6
Gohir.A10G172100 Gossypium hirsutum HOM05D007976 ORTHO05D002678 1.1e-06 60.1 820 23.2
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 1.1e-06 60.1 1158 22.8
A03p12430 Brassica napus HOM05D003779 ORTHO05D002678 1.5e-06 59.7 313 26.8
HanXRQChr10g0314671 Helianthus annuus HOM05D003779 ORTHO05D002678 1.5e-06 59.7 314 24.8
BcaB01g04473 Brassica carinata HOM05D003779 ORTHO05D002678 2.0e-06 59.3 325 23.4
Hund11973 Selenicereus undatus HOM05D007976 ORTHO05D002678 2.0e-06 59.3 378 24.3
Dinv44288 Davidia involucrata HOM05D007976 ORTHO05D002678 7.4e-06 57.4 1122 22.5
Gohir.A05G051500 Gossypium hirsutum HOM05D003779 ORTHO05D002678 9.7e-06 57.0 484 23.1


User provided reference genes

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