Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 3292.3 1703 100.0
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 3171.7 1706 95.8
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 3051.2 1708 92.7
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 3020.7 1707 91.6
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 3001.1 1702 91.7
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2703.7 1713 83.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2702.9 1713 83.9
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2700.2 1711 83.9
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 2686.4 1732 82.9
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2666.7 1728 81.8
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2473.7 1747 75.8
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2469.1 1765 75.9
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2212.2 1830 66.1
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2191.8 1813 66.8
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2187.5 1840 65.2
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2184.8 1820 66.5
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2175.6 1871 64.6
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2173.7 1839 65.3
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2170.6 1755 67.5
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2168.3 1818 66.0
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2166.3 1840 65.1
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2161.0 1823 65.4
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2157.9 1812 65.8
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2152.5 1854 64.5
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2151.3 1816 64.8
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2149.4 1826 65.7
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2147.9 1825 65.6
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2146.7 1825 65.4
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2144.4 1827 65.3
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2142.1 1817 64.6
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2140.5 1814 65.5
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2139.4 1813 65.5
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2138.6 1837 63.5
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2137.5 1858 64.0
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2135.9 1829 64.8
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2128.6 1818 64.0
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 2122.8 1670 71.6
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2116.3 1826 63.9
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2115.5 1808 65.0
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2105.1 1825 64.4
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2104.3 1802 63.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2102.0 1807 64.1
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2100.5 1811 63.2
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2092.8 1824 63.1
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2092.4 1803 63.8
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2090.1 1825 63.6
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2088.9 1834 63.2
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2086.6 1809 62.2
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2086.6 1815 62.7
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2083.5 1781 63.8
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2081.2 1838 62.9
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2077.4 1825 62.2
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2076.2 1835 63.3
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2075.8 1819 62.3
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2072.4 1742 65.7
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2071.6 1826 62.3
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2065.8 1887 61.0
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2063.1 1821 61.6
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2062.7 1889 61.2
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2059.6 1820 62.8
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2057.0 1838 62.8
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2053.1 1833 61.5
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2051.9 1844 62.8
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2051.6 1823 61.2
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2050.0 1843 63.2
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2046.2 1837 61.5
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2044.2 1797 63.0
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2044.2 1817 62.2
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2042.7 1792 63.1
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2040.8 1819 62.7
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2040.0 1753 63.3
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2028.4 1799 63.0
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2023.1 1802 61.3
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2018.4 1828 62.1
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2017.7 1820 63.1
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2014.2 1819 61.5
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2014.2 1819 61.5
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2012.7 1805 61.8
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2009.2 1801 61.1
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2009.2 1794 62.1
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2004.6 1802 62.9
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1993.0 1733 62.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 1986.8 1787 61.4
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1976.4 1818 60.7
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1975.3 1739 62.9
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1971.4 1766 61.9
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 1958.0 1823 60.4
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1951.8 1780 60.6
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 1946.0 1707 63.2
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1922.1 1102 90.9
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1921.7 1735 62.0
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1806.6 1797 58.3
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1806.2 1699 60.4
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1796.2 1866 54.7
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1795.4 1743 58.2
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1746.5 1828 55.0
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1729.9 1771 54.7
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1697.6 1754 53.1
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1560.8 1405 62.8
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1523.1 1344 63.1
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1510.0 1657 53.8
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1474.9 1720 51.5
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1359.7 1331 58.7
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1358.2 1326 57.4
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1355.9 1323 57.1
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1345.5 1505 53.9
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1328.5 1226 60.8
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1281.2 1214 58.8
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1275.8 1983 41.4
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1198.0 1747 43.5
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1184.1 1180 55.8
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1164.4 1907 39.4
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1161.4 979 64.6
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1133.6 1944 38.2
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1130.5 1386 49.8
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1123.2 1906 39.2
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.4e-301 1039.3 1145 54.8
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.6e-239 834.3 816 57.4
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 4.9e-236 822.8 1301 41.9
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 3.3e-224 783.5 1399 38.0
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 7.7e-205 719.2 621 59.6
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 5.3e-198 696.4 528 70.8
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 2.2e-191 674.5 471 75.6
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 9.5e-171 605.9 463 67.8
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 1.6e-162 578.6 602 53.8
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.1e-161 575.9 489 68.1
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.7e-159 568.5 589 54.3
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 3.2e-158 564.3 382 78.8
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 1.1e-155 555.8 349 77.7
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 7.3e-147 526.6 431 59.4
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 2.0e-144 518.5 390 72.8
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.3e-140 505.0 354 70.6
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 7.3e-131 473.4 380 68.9
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.6e-130 472.2 564 50.0
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.0e-116 424.9 329 65.0
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 2.5e-107 395.2 257 86.4
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 4.3e-107 394.4 468 51.3
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 3.6e-101 374.8 270 74.1
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 8.0e-85 320.5 396 48.0
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 8.8e-76 290.4 382 47.1
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.3e-68 265.8 298 55.0
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 3.0e-68 265.4 296 55.7
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.7e-66 259.6 301 55.1
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 4.6e-48 198.4 123 79.7
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 2.4e-41 176.0 128 68.0
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 1.9e-22 113.2 70 82.9
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 2.1e-21 109.8 71 77.5
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 6.9e-20 104.8 90 60.0
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 3.4e-19 102.4 70 71.4
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 2.9e-18 99.4 592 22.6
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 7.4e-14 84.7 68 61.8
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.3e-13 84.0 66 63.6
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 2.1e-13 83.2 70 58.6
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 8.1e-13 81.3 70 58.6
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.8e-12 80.1 39 84.6
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 2.6e-11 76.3 204 26.0
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.2e-10 73.2 171 33.9
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 2.3e-07 63.2 37 81.1
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 5.6e-06 58.5 199 25.6
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 7.4e-06 58.2 88 45.5


User provided reference genes

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