Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 2.5e-215 751.9 394 100.0
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 9.7e-212 740.0 394 98.5
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 3.1e-210 734.9 394 97.5
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.5e-207 726.1 394 95.9
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 8.3e-203 710.3 396 94.4
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.5e-199 699.5 394 93.1
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 6.1e-198 694.1 394 91.4
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 8.0e-198 693.7 399 92.0
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.4e-197 693.0 394 91.9
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 2.3e-197 692.2 394 91.9
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 2.3e-197 692.2 394 91.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.1e-191 673.3 378 93.1
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 2.1e-190 669.1 394 87.3
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.0e-189 666.8 394 85.0
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 6.2e-174 614.4 403 80.6
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 3.8e-163 578.6 394 77.9
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.5e-161 572.0 393 74.6
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.7e-160 569.7 392 74.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 6.6e-160 567.8 394 73.1
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.1e-159 567.0 392 73.7
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.1e-158 562.8 392 74.0
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 72.8
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.7e-158 561.6 392 73.7
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 5.2e-157 558.1 392 72.4
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 2.6e-156 555.8 392 72.7
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 72.6
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 4.4e-156 555.1 393 73.3
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 5.8e-156 554.7 392 71.9
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 7.6e-156 554.3 392 71.2
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 9.9e-156 553.9 394 72.3
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 9.9e-156 553.9 395 74.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 6.4e-155 551.2 395 74.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 8.4e-155 550.8 395 73.4
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-154 550.4 395 73.9
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-154 550.4 395 73.9
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.4e-154 550.1 392 72.4
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 4.2e-154 548.5 392 71.9
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.1e-154 547.7 395 73.7
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.1e-154 547.7 395 73.7
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 9.3e-154 547.4 395 73.4
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 9.3e-154 547.4 397 72.8
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 9.3e-154 547.4 394 72.6
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 3.5e-153 545.4 395 73.4
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 6.0e-153 544.7 393 73.3
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 6.0e-153 544.7 411 70.1
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 7.8e-153 544.3 394 71.8
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 2.3e-152 542.7 393 70.7
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 3.0e-152 542.3 396 72.5
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 3.9e-152 542.0 393 71.8
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 5.1e-152 541.6 394 71.3
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 6.6e-152 541.2 395 72.9
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 8.7e-152 540.8 395 72.2
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.1e-151 540.4 392 71.9
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 1.9e-151 539.7 394 69.8
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 2.5e-151 539.3 394 69.8
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 3.3e-151 538.9 394 72.1
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 5.6e-151 538.1 395 72.7
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 7.3e-151 537.7 394 71.3
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.3e-150 537.0 381 77.4
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 1.6e-150 536.6 394 70.3
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 3.6e-150 535.4 394 70.1
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 4.8e-150 535.0 395 70.9
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.5e-148 530.0 376 71.8
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 1.5e-148 530.0 394 69.3
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 4.5e-148 528.5 392 69.4
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 2.4e-146 522.7 397 68.8
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.6e-145 520.0 402 69.9
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 4.6e-145 518.5 396 69.2
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.0e-144 517.3 417 66.4
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.3e-144 516.9 392 66.1
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.9e-143 513.1 438 63.5
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.9e-143 513.1 394 69.0
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.1e-141 507.3 370 71.6
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 9.0e-141 504.2 370 71.9
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 5.8e-140 501.5 394 68.3
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 9.9e-140 500.7 397 68.0
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-139 500.4 397 67.8
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 3.8e-139 498.8 393 67.2
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 6.4e-139 498.0 394 67.3
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 9.3e-138 494.2 356 70.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.1e-137 493.0 394 66.5
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 2.1e-137 493.0 394 66.5
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.0e-136 490.7 394 67.0
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.9e-135 486.5 394 65.7
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 7.4e-135 484.6 413 63.4
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 3.7e-134 482.3 394 65.2
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 9.0e-133 477.6 392 65.8
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.5e-132 476.9 394 65.0
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.7e-131 473.4 396 64.4
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 6.5e-131 471.5 398 63.3
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.1e-130 470.7 394 65.0
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 2.5e-127 459.5 394 62.2
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 2.8e-126 456.1 426 59.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 6.9e-125 451.4 403 62.0
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.3e-123 447.2 398 62.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 3.7e-118 429.1 246 90.7
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.1e-117 427.6 395 62.8
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 3.0e-112 409.5 372 59.4
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 4.4e-111 405.6 392 54.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 3.7e-110 402.5 394 55.6
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 8.2e-102 374.8 398 52.0
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.4e-101 374.0 402 52.0
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.0e-99 367.9 393 53.9
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 5.0e-99 365.5 292 64.4
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 6.5e-91 338.6 285 64.6
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 9.4e-90 334.7 312 58.3
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.5e-79 300.8 331 54.7
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.8e-72 277.3 153 95.4
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.3e-72 276.9 378 45.8
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 2.6e-71 273.5 303 53.8
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 2.6e-71 273.5 389 47.0
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 5.8e-63 245.7 165 78.2
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.7e-60 236.9 295 48.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 7.8e-60 235.3 183 64.5
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.3e-59 234.6 542 33.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 8.6e-59 231.9 183 63.9
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 2.1e-57 227.3 170 65.9
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 9.2e-53 211.8 417 32.4
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 3.5e-52 209.9 125 89.6
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 3.3e-50 203.4 138 78.3
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.8e-48 197.6 122 79.5
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 3.1e-48 196.8 408 35.8
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.0e-47 194.1 150 70.0
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 2.0e-47 194.1 395 34.4
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 4.7e-41 172.9 207 50.2
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 8.1e-41 172.2 92 94.6
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.8e-40 171.0 146 65.8
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.5e-39 167.9 125 69.6
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.7e-38 164.5 116 75.9
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 2.9e-38 163.7 125 72.8
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 1.4e-29 134.8 178 53.9
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.6e-28 131.3 121 59.5
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.5e-26 124.8 69 76.8
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.5e-26 124.8 91 69.2
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.2e-25 119.4 148 43.9
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 6.9e-24 115.9 81 70.4
BolC7t41419H Brassica oleracea HOM05D004899 ORTHO05D006580 5.1e-19 99.8 63 73.0
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 5.1e-19 99.8 76 69.7
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.8e-17 93.2 50 78.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 8.2e-17 92.4 81 64.2
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.0e-14 85.5 57 73.7
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.9e-14 84.0 57 70.2
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.3e-11 75.1 44 81.8
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 4.1e-08 63.5 47 61.7
A04p04990 Brassica napus HOM05D004899 ORTHO05D006580 6.9e-08 62.8 43 69.8
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.2e-07 62.0 38 81.6
BolC1t02169H Brassica oleracea HOM05D004899 ORTHO05D006580 4.5e-07 60.1 36 86.1
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 5.9e-07 59.7 35 80.0
BcaB08g35980 Brassica carinata HOM05D042867 ORTHO05D094468 1.3e-06 58.5 83 47.0
BcaB06g28621 Brassica carinata HOM05D002665 ORTHO05D002991 3.8e-06 57.0 30 83.3
SalBow5G1052 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.8e-06 57.0 60 51.7
SalBow6G4382 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.8e-06 57.0 60 51.7
SalBow8G1246 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.8e-06 57.0 60 51.7


User provided reference genes

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