Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.0e-211 738.8 363 100.0
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 4.3e-206 721.1 363 97.2
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.4e-193 679.5 362 91.4
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 1.0e-191 673.3 361 90.6
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 2.5e-190 668.7 363 89.8
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 8.2e-189 663.7 361 89.2
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.1e-188 663.3 362 89.5
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 1.8e-188 662.5 361 88.6
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 4.1e-188 661.4 348 91.1
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 2.0e-187 659.1 350 90.6
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 7.6e-187 657.1 348 90.8
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 7.9e-184 647.1 348 89.1
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 3.7e-181 638.3 361 85.3
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.0e-175 620.2 363 82.1
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 7.4e-174 614.0 363 81.5
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 7.4e-174 614.0 353 82.2
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 4.8e-173 611.3 361 81.4
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 4.1e-172 608.2 362 80.9
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 2.9e-170 602.1 363 79.1
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 5.5e-169 597.8 355 79.2
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 6.1e-168 594.3 346 80.3
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 8.0e-168 594.0 361 76.7
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 1.4e-167 593.2 361 78.4
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 1.1e-166 590.1 359 77.2
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 3.3e-166 588.6 359 76.6
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.2e-165 585.9 359 76.6
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 3.7e-165 585.1 356 77.2
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 4.8e-165 584.7 346 79.2
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.4e-164 583.2 350 78.9
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.8e-164 582.8 362 77.1
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 3.1e-164 582.0 346 79.2
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.3e-164 581.3 362 77.1
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 5.3e-164 581.3 348 78.2
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 7.0e-164 580.9 362 77.1
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 9.1e-164 580.5 349 79.1
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 9.1e-164 580.5 343 79.6
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 1.2e-163 580.1 359 77.2
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.2e-163 580.1 356 77.0
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 2.0e-163 579.3 359 77.7
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 2.6e-163 578.9 358 76.5
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 4.5e-163 578.2 349 78.8
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 5.9e-163 577.8 356 76.4
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 7.7e-163 577.4 348 77.9
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.7e-162 576.2 347 78.1
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 2.9e-162 575.5 354 75.4
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 3.8e-162 575.1 347 78.4
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 6.5e-162 574.3 359 74.9
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 8.5e-162 573.9 346 77.7
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 1.1e-161 573.5 362 74.9
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 1.1e-161 573.5 348 77.6
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 1.9e-161 572.8 360 73.9
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 2.5e-161 572.4 348 77.3
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.5e-161 572.4 362 76.0
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 2.5e-161 572.4 362 75.1
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 4.2e-161 571.6 362 73.8
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 4.2e-161 571.6 353 75.9
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 4.2e-161 571.6 348 77.6
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 1.2e-160 570.1 356 75.6
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 1.2e-160 570.1 360 74.2
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 1.6e-160 569.7 353 76.5
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.6e-160 569.7 346 75.4
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 3.6e-160 568.5 353 76.8
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 4.7e-160 568.2 348 76.4
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 4.7e-160 568.2 348 77.3
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.0e-159 567.0 345 76.8
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.8e-159 566.2 352 75.3
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.8e-159 566.2 360 76.1
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 2.3e-159 565.8 346 76.6
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 5.2e-159 564.7 350 75.7
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.2e-158 563.5 348 77.6
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 2.0e-158 562.8 362 74.6
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 2.0e-158 562.8 348 75.9
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 2.0e-158 562.8 362 73.5
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 4.4e-158 561.6 346 76.0
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 4.4e-158 561.6 348 75.6
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 5.7e-158 561.2 389 71.7
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 2.8e-157 558.9 352 74.7
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 7.0e-156 554.3 365 74.8
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 9.1e-156 553.9 348 75.9
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 2.0e-155 552.7 343 75.8
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 2.9e-154 548.9 350 73.1
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 3.8e-154 548.5 342 75.1
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 3.8e-154 548.5 357 73.4
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 3.8e-154 548.5 347 74.1
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 1.1e-153 547.0 357 73.1
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.9e-153 546.2 347 76.4
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 2.5e-153 545.8 341 76.0
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 3.2e-153 545.4 371 73.3
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 3.2e-153 545.4 362 72.7
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 9.4e-153 543.9 360 72.5
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 8.8e-151 537.3 335 76.1
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 8.8e-151 537.3 346 72.5
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 7.5e-150 534.3 346 71.1
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.3e-149 533.5 346 73.7
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 4.8e-149 531.6 347 72.0
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 8.3e-149 530.8 353 72.0
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 8.3e-149 530.8 346 72.8
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 1.1e-148 530.4 342 74.0
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.1e-148 530.4 347 73.2
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 2.0e-147 526.2 346 72.5
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.0e-146 523.9 387 66.4
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 8.6e-146 520.8 346 71.7
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 7.2e-145 517.7 364 67.9
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 3.0e-143 512.3 364 68.7
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 1.2e-142 510.4 344 70.9
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 1.5e-142 510.0 356 68.3
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 3.7e-141 505.4 351 70.1
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 2.0e-139 499.6 323 74.6
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 9.5e-137 490.7 346 68.5
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.2e-136 490.3 339 67.8
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 4.6e-131 471.9 284 78.5
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 4.7e-128 461.8 337 65.3
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 2.6e-126 456.1 268 80.2
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 5.4e-124 448.4 272 77.2
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 6.0e-123 444.9 270 77.4
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 8.6e-122 441.0 348 63.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.2e-118 430.6 269 75.1
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 8.3e-117 424.5 265 75.1
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 7.8e-115 417.9 268 75.0
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 2.6e-110 402.9 373 57.9
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 1.3e-109 400.6 364 58.0
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.7e-109 400.2 235 80.9
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 3.2e-108 396.0 330 59.1
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 1.2e-107 394.0 348 56.6
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 2.1e-104 383.3 343 55.1
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 8.1e-104 381.3 250 72.4
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 9.9e-102 374.4 268 66.0
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 1.3e-101 374.0 336 58.3
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 6.4e-101 371.7 277 65.7
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.3e-89 332.8 355 51.3
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 2.1e-88 330.1 366 48.6
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 3.4e-86 322.8 204 73.0
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 4.6e-83 312.4 350 47.1
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 3.0e-82 309.7 347 48.4
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.9e-74 282.7 234 62.4
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 9.0e-71 271.6 161 77.6
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.1e-68 264.6 208 65.4
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.5e-62 244.2 229 56.3
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 2.1e-59 233.8 194 61.9
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 3.3e-49 199.9 112 79.5
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 1.6e-46 191.0 131 68.7
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 2.3e-34 150.6 113 62.8
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 5.4e-31 139.4 187 44.9
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 1.4e-26 124.8 70 82.9
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 5.9e-22 109.4 64 76.6
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 5.0e-21 106.3 78 62.8
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 1.1e-20 105.1 68 67.6
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 3.3e-12 77.0 44 75.0
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 1.4e-10 71.6 40 72.5
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 2.4e-07 60.8 212 27.8
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 2.1e-06 57.8 81 39.5


User provided reference genes

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