Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL307U10030 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 0.0e+00 1195.6 608 100.0
AL4G25950 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 0.0e+00 1172.1 609 98.4
BraA06t23482Z Brassica rapa HOM05D003089 ORTHO05D003544 1.7e-218 763.1 626 67.3
A06p02740 Brassica napus HOM05D003089 ORTHO05D003544 1.1e-217 760.4 646 65.8
Carub.0001s3993 Capsella rubella HOM05D003089 ORTHO05D003544 7.0e-217 757.7 661 62.8
BcaC08g43274 Brassica carinata HOM05D003089 ORTHO05D003544 4.5e-216 755.0 659 64.6
C06p06220 Brassica napus HOM05D003089 ORTHO05D003544 4.5e-216 755.0 659 64.6
BolC6t35733H Brassica oleracea HOM05D003089 ORTHO05D003544 4.5e-216 755.0 659 64.6
BcaB07g33546 Brassica carinata HOM05D003089 ORTHO05D003544 5.5e-214 748.0 661 62.8
Thhalv10011177m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 2.4e-209 732.6 754 57.2
BcaC05g27516 Brassica carinata HOM05D003089 ORTHO05D003544 7.0e-209 731.1 741 57.9
BolC5t32215H Brassica oleracea HOM05D003089 ORTHO05D003544 7.0e-209 731.1 741 57.9
C05p34900 Brassica napus HOM05D003089 ORTHO05D003544 2.0e-208 729.6 741 57.8
BolC6t35540H Brassica oleracea HOM05D003089 ORTHO05D003544 3.2e-206 722.2 744 56.6
BcaB07g33678 Brassica carinata HOM05D003089 ORTHO05D003544 5.5e-206 721.5 743 57.2
BcaC08g43133 Brassica carinata HOM05D003089 ORTHO05D003544 5.5e-206 721.5 744 56.6
Carub.0001s3852 Capsella rubella HOM05D003089 ORTHO05D003544 9.4e-206 720.7 755 56.4
AL1G56300 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.0e-204 717.2 748 56.8
CARHR039330 Cardamine hirsuta HOM05D003089 ORTHO05D003544 1.4e-204 716.8 753 56.4
C06p04080 Brassica napus HOM05D003089 ORTHO05D003544 1.8e-204 716.5 745 56.1
BraA06t23597Z Brassica rapa HOM05D003089 ORTHO05D003544 8.8e-204 714.1 742 56.7
A05p20670 Brassica napus HOM05D003089 ORTHO05D003544 3.4e-203 712.2 734 57.8
BraA05t20975Z Brassica rapa HOM05D003089 ORTHO05D003544 3.4e-203 712.2 734 57.8
AT1G49340 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 5.7e-203 711.4 756 55.4
A06p03880 Brassica napus HOM05D003089 ORTHO05D003544 5.7e-203 711.4 742 56.6
Aa31LG10G4610 Aethionema arabicum HOM05D003089 ORTHO05D003544 3.7e-202 708.8 799 53.3
Sp1g36200 Schrenkiella parvula HOM05D003089 ORTHO05D003544 1.6e-200 703.4 755 56.0
THA.LOC104804915 Tarenaya hassleriana HOM05D003089 ORTHO05D003544 3.5e-200 702.2 754 54.9
BcaB02g11071 Brassica carinata HOM05D003089 ORTHO05D003544 4.2e-198 695.3 738 55.6
Aa31LG10G3360 Aethionema arabicum HOM05D003089 ORTHO05D003544 1.9e-190 669.8 683 56.7
Gohir.D04G158700 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.2e-181 640.6 718 52.4
Gorai.012G146100 Gossypium raimondii HOM05D003089 ORTHO05D003544 8.0e-181 637.9 718 52.2
Gohir.A04G117000 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.5e-179 633.6 718 52.1
Ciclev10027664m.g Citrus clementina HOM05D003089 ORTHO05D003544 4.4e-179 632.1 740 50.5
Duzib052G1069 Durio zibethinus HOM05D003089 ORTHO05D003544 1.7e-178 630.2 739 49.9
Thecc.02G123600 Theobroma cacao HOM05D003089 ORTHO05D003544 7.0e-177 624.8 739 49.8
COL.COLO4_32443 Corchorus olitorius HOM05D003089 ORTHO05D003544 1.7e-175 620.2 738 49.2
Duzib132G0336 Durio zibethinus HOM05D003089 ORTHO05D003544 1.9e-174 616.7 744 49.2
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 9.5e-174 614.4 680 52.2
Prupe.8G100100 Prunus persica HOM05D003089 ORTHO05D003544 4.7e-173 612.1 752 48.8
Potri.009G113700 Populus trichocarpa HOM05D003089 ORTHO05D003544 6.2e-173 611.7 755 48.6
CANSAT25G2870 Cannabis sativa HOM05D003089 ORTHO05D003544 1.4e-172 610.5 762 47.2
Manes.15G165000 Manihot esculenta HOM05D003089 ORTHO05D003544 3.1e-172 609.4 748 48.0
MD05G1068200 Malus domestica HOM05D003089 ORTHO05D003544 4.0e-172 609.0 753 48.5
Haze_02363 Corylus avellana HOM05D003089 ORTHO05D003544 5.2e-172 608.6 763 47.3
Sabra09G0087300 Salix brachista HOM05D003089 ORTHO05D003544 1.2e-171 607.4 755 48.1
Gorai.005G228400 Gossypium raimondii HOM05D003089 ORTHO05D003544 9.9e-171 604.4 704 50.1
RcHm_v2.0_Chr6g0263811 Rosa chinensis HOM05D003089 ORTHO05D003544 1.7e-170 603.6 756 47.5
Gohir.A03G179500 Gossypium hirsutum HOM05D003089 ORTHO05D003544 6.4e-170 601.7 704 49.7
Gohir.D02G202895 Gossypium hirsutum HOM05D003089 ORTHO05D003544 8.3e-170 601.3 704 49.9
QL11p043039 Quercus lobata HOM05D003089 ORTHO05D003544 1.4e-169 600.5 768 46.7
Rhsim11G0174300 Rhododendron simsii HOM05D003089 ORTHO05D003544 3.2e-169 599.4 742 49.2
CiPaw.06G137000 Carya illinoinensis HOM05D003089 ORTHO05D003544 5.4e-169 598.6 761 46.6
FAN27G3350 Fragaria x ananassa HOM05D003089 ORTHO05D003544 2.1e-168 596.7 754 47.1
Potri.004G152400 Populus trichocarpa HOM05D003089 ORTHO05D003544 2.7e-168 596.3 754 47.2
FvH4_2g08470 Fragaria vesca HOM05D003089 ORTHO05D003544 1.7e-167 593.6 754 47.3
Sabra04G0101100 Salix brachista HOM05D003089 ORTHO05D003544 2.3e-167 593.2 753 46.6
TAR622G0009 Trochodendron aralioides HOM05D003089 ORTHO05D003544 2.3e-167 593.2 762 47.4
Lalb_Chr23g0265471 Lupinus albus HOM05D003089 ORTHO05D003544 3.9e-167 592.4 741 46.6
CSS0027140 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 5.1e-167 592.0 756 47.5
CSS0026532 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 8.6e-167 591.3 756 47.5
FAN15G0570 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.1e-166 590.9 754 46.8
MD10G1078200 Malus domestica HOM05D003089 ORTHO05D003544 1.5e-166 590.5 754 47.3
FAN24G1972 Fragaria x ananassa HOM05D003089 ORTHO05D003544 3.3e-166 589.3 754 47.1
FAN24G2674 Fragaria x ananassa HOM05D003089 ORTHO05D003544 3.3e-166 589.3 754 47.1
CsaV3_7G023410 Cucumis sativus L. HOM05D003089 ORTHO05D003544 4.3e-166 589.0 753 47.3
Lj9C368G4 Lonicera japonica HOM05D003089 ORTHO05D003544 5.6e-166 588.6 740 47.7
TAR369G0041 Trochodendron aralioides HOM05D003089 ORTHO05D003544 1.6e-165 587.0 761 46.6
Actinidia00513 Actinidia chinensis HOM05D003089 ORTHO05D003544 2.8e-165 586.3 751 46.7
Lj1g0018032 Lotus japonicus HOM05D003089 ORTHO05D003544 6.2e-165 585.1 760 45.9
MELO3C012545.2 Cucumis melo HOM05D003089 ORTHO05D003544 8.1e-165 584.7 759 46.6
PGR042G2422 Punica granatum HOM05D003089 ORTHO05D003544 1.4e-164 583.9 744 46.9
Nn1g03865 Nelumbo nucifera HOM05D003089 ORTHO05D003544 3.1e-164 582.8 735 47.1
TWI75G1044 Tripterygium wilfordii HOM05D003089 ORTHO05D003544 4.0e-164 582.4 739 47.9
vmacro02128 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 5.2e-164 582.0 738 47.4
Ca_15379_v3 Cicer arietinum L. HOM05D003089 ORTHO05D003544 6.8e-164 581.6 760 45.4
Sed0019364 Sechium edule HOM05D003089 ORTHO05D003544 1.2e-163 580.9 758 46.0
Sp1g37760 Schrenkiella parvula HOM05D003089 ORTHO05D003544 1.5e-163 580.5 506 64.6
arahy.Tifrunner.gnm1.ann1.U64SVT Arachis hypogaea HOM05D003089 ORTHO05D003544 2.6e-163 579.7 726 46.7
DCAR_003639 Daucus carota HOM05D003089 ORTHO05D003544 3.4e-163 579.3 729 47.1
Medtr3g116250 Medicago truncatula HOM05D003089 ORTHO05D003544 7.6e-163 578.2 758 45.1
ClCG02G005170 Citrullus lanatus HOM05D003089 ORTHO05D003544 9.9e-163 577.8 759 46.2
TPR.G38232 Trifolium pratense HOM05D003089 ORTHO05D003544 2.9e-162 576.2 734 46.0
Glyma.06G013800 Glycine max HOM05D003089 ORTHO05D003544 4.9e-162 575.5 758 45.8
ClCG11G004530 Citrullus lanatus HOM05D003089 ORTHO05D003544 8.4e-162 574.7 745 45.2
Lsat_1_v5_gn_9_109381 Lactuca sativa HOM05D003089 ORTHO05D003544 8.4e-162 574.7 726 46.8
Glyma.04G013900 Glycine max HOM05D003089 ORTHO05D003544 3.2e-161 572.8 758 45.0
Lalb_Chr00c44g0412571 Lupinus albus HOM05D003089 ORTHO05D003544 7.1e-161 571.6 753 45.2
Lalb_Chr08g0246561 Lupinus albus HOM05D003089 ORTHO05D003544 7.1e-161 571.6 753 45.2
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 9.2e-161 571.2 735 47.2
Sc18g0004600 Simmondsia chinensis HOM05D003089 ORTHO05D003544 9.2e-161 571.2 757 45.6
Lsat_1_v5_gn_5_118040 Lactuca sativa HOM05D003089 ORTHO05D003544 2.7e-160 569.7 668 48.5
Sed0010503 Sechium edule HOM05D003089 ORTHO05D003544 4.6e-160 568.9 729 45.5
Phvul.009G009000 Phaseolus vulgaris HOM05D003089 ORTHO05D003544 7.8e-160 568.2 757 44.5
Nn3g17070 Nelumbo nucifera HOM05D003089 ORTHO05D003544 3.9e-159 565.8 761 45.6
SalBow6G2407 Salvia bowleyana HOM05D003089 ORTHO05D003544 5.1e-159 565.5 728 45.9
SalBow6G4859 Salvia bowleyana HOM05D003089 ORTHO05D003544 5.1e-159 565.5 728 45.9
SGA_v2.0_scaffold58G20555 Striga asiatica HOM05D003089 ORTHO05D003544 1.9e-158 563.5 762 45.3
arahy.Tifrunner.gnm1.ann1.AHB8GW Arachis hypogaea HOM05D003089 ORTHO05D003544 1.6e-157 560.5 770 44.2
CsaV3_2G014560 Cucumis sativus L. HOM05D003089 ORTHO05D003544 2.1e-157 560.1 747 44.8
PSO478G0141 Papaver somniferum HOM05D003089 ORTHO05D003544 2.1e-157 560.1 748 45.9
Hund06224 Selenicereus undatus HOM05D003089 ORTHO05D003544 2.1e-157 560.1 726 45.3
EL10Ac9g21746 Beta vulgaris HOM05D003089 ORTHO05D003544 1.8e-156 557.0 758 43.9
PSO161G0089 Papaver somniferum HOM05D003089 ORTHO05D003544 1.8e-156 557.0 748 45.7
Oeu020770.2 Olea europaea HOM05D003089 ORTHO05D003544 2.4e-156 556.6 685 47.4
ECA234G4407 Erigeron canadensis HOM05D003089 ORTHO05D003544 3.1e-156 556.2 679 47.0
Lj5C199G5 Lonicera japonica HOM05D003089 ORTHO05D003544 5.2e-156 555.4 735 46.1
Migut.B00253 Erythranthe guttata HOM05D003089 ORTHO05D003544 6.9e-156 555.1 751 44.9
HanXRQChr10g0307291 Helianthus annuus HOM05D003089 ORTHO05D003544 2.0e-155 553.5 677 48.2
MSTRG.20096 Avicennia marina HOM05D003089 ORTHO05D003544 4.4e-155 552.4 755 44.9
Ah.01g019560 Amaranthus hybridus HOM05D003089 ORTHO05D003544 9.9e-155 551.2 766 43.7
HanXRQChr08g0216591 Helianthus annuus HOM05D003089 ORTHO05D003544 1.7e-154 550.4 727 45.5
Cc02_g17780 Coffea canephora HOM05D003089 ORTHO05D003544 3.8e-154 549.3 755 45.2
Solyc11g043130.2 Solanum lycopersicum HOM05D003089 ORTHO05D003544 1.1e-153 547.7 698 47.6
Psat5g008280 Pisum sativum HOM05D003089 ORTHO05D003544 1.4e-153 547.4 790 43.0
Aqoxy3G03189 Aquilegia oxysepala HOM05D003089 ORTHO05D003544 4.2e-153 545.8 769 44.1
Sopen11g019550 Solanum pennellii HOM05D003089 ORTHO05D003544 4.2e-153 545.8 698 47.4
vmacro02129 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 7.1e-153 545.0 698 47.6
Nitab4.5_0000736g0060 Nicotiana tabacum HOM05D003089 ORTHO05D003544 9.3e-153 544.7 706 46.7
MBI03_g27663_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 1.3e-151 540.8 817 42.8
Nitab4.5_0000336g0120 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.3e-151 540.8 706 46.5
Peaxi162Scf00684g00421 Petunia axillaris HOM05D003089 ORTHO05D003544 2.5e-150 536.6 704 46.4
Hund00286 Selenicereus undatus HOM05D003089 ORTHO05D003544 4.3e-150 535.8 753 42.9
AUR62011350 Chenopodium quinoa HOM05D003089 ORTHO05D003544 1.6e-149 533.9 765 42.6
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 4.8e-149 532.3 714 45.1
CAN.G566.47 Capsicum annuum HOM05D003089 ORTHO05D003544 1.7e-146 523.9 698 45.6
SGA_v2.0_scaffold32G13157 Striga asiatica HOM05D003089 ORTHO05D003544 7.1e-145 518.5 708 44.6
CANSAT21G0290 Cannabis sativa HOM05D003089 ORTHO05D003544 3.0e-143 513.1 698 46.0
AUR62016712 Chenopodium quinoa HOM05D003089 ORTHO05D003544 6.7e-143 511.9 747 41.8
ATR0749G081 Amborella trichopoda HOM05D003089 ORTHO05D003544 2.4e-140 503.4 755 41.7
SHI05424 Sapria himalayana HOM05D003089 ORTHO05D003544 5.8e-139 498.8 757 41.0
Atru.chr5.2984 Acer truncatum HOM05D003089 ORTHO05D003544 1.3e-138 497.7 612 48.7
Nitab4.5_0002814g0110 Nicotiana tabacum HOM05D003089 ORTHO05D003544 2.7e-136 490.0 677 44.3
Nitab4.5_0000982g0100 Nicotiana tabacum HOM05D003089 ORTHO05D003544 4.6e-136 489.2 691 43.6
SEGI_36294 Sequoiadendron giganteum HOM05D003089 ORTHO05D003544 1.0e-130 471.5 785 38.3
HPP92_026531 Vanilla planifolia HOM05D003089 ORTHO05D003544 4.6e-128 462.6 722 40.7
Peaxi162Scf00242g00019 Petunia axillaris HOM05D003089 ORTHO05D003544 6.7e-127 458.8 685 43.2
Zm00001eb216400 Zea mays HOM05D003089 ORTHO05D003544 7.4e-126 455.3 683 41.0
VMungo1309G0726 Vigna mungo HOM05D003089 ORTHO05D003544 1.6e-125 454.1 418 57.7
Cpa.g.sc62.126 Carica papaya HOM05D003089 ORTHO05D003544 7.6e-123 445.3 461 55.7
CDE04G2374 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 1.1e-116 424.9 483 50.1
unitig_61.g25998 Utricularia gibba HOM05D003089 ORTHO05D003544 1.4e-108 397.9 747 36.0
HPP92_026558 Vanilla planifolia HOM05D003089 ORTHO05D003544 4.7e-104 382.9 373 54.7
MELO3C020989.2 Cucumis melo HOM05D003089 ORTHO05D003544 6.1e-104 382.5 602 41.2
Eucgr.G00449 Eucalyptus grandis HOM05D003089 ORTHO05D003544 2.0e-102 377.5 525 43.6
SMO116G0267 Selaginella moellendorffii HOM05D003089 ORTHO05D003544 1.0e-95 355.1 472 43.6
Mapoly0001s0228 Marchantia polymorpha HOM05D003089 ORTHO05D003544 6.3e-93 345.9 488 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1888 Anthoceros agrestis HOM05D003089 ORTHO05D003544 7.7e-91 339.0 483 42.0
Mapoly0001s0451 Marchantia polymorpha HOM05D003089 ORTHO05D003544 4.2e-89 333.2 509 39.5
Pp3c22_1940 Physcomitrium patens HOM05D003089 ORTHO05D003544 3.6e-88 330.1 487 40.9
Pp3c5_19540 Physcomitrium patens HOM05D003089 ORTHO05D003544 2.3e-79 300.8 490 37.3
DCAR_000244 Daucus carota HOM05D003089 ORTHO05D003544 8.3e-77 292.4 474 39.5
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.0e-66 258.8 250 55.2
Thhalv10012090m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 3.3e-65 253.8 256 60.2
CAN.G638.23 Capsicum annuum HOM05D003089 ORTHO05D003544 8.3e-61 239.2 228 57.0
Peaxi162Scf00242g00009 Petunia axillaris HOM05D003089 ORTHO05D003544 1.4e-55 221.9 218 55.0
CBR_g31025 Chara braunii HOM05D003089 ORTHO05D003544 3.4e-46 190.7 539 30.2
FAN27G0914 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.1e-39 169.1 152 59.2
AT1G51040 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 1.3e-29 135.6 111 59.5
Hma1.2p1_0196F.1_g084730 Hydrangea macrophylla HOM05D003089 ORTHO05D003544 1.3e-29 135.6 105 65.7
Eucgr.L03231 Eucalyptus grandis HOM05D003089 ORTHO05D003544 4.9e-29 133.7 103 64.1
CDE04G1756 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 1.1e-20 105.9 112 46.4
CDE07G0793 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 1.6e-19 102.1 112 45.5
CDE07G1820 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 6.1e-11 73.6 171 32.7
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 7.4e-09 66.6 91 45.1


User provided reference genes

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