Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.4e-272 942.6 541 100.0
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.4e-240 836.3 600 85.5
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.8e-232 809.3 592 84.6
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.0e-215 752.7 616 78.1
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 4.5e-207 724.9 530 77.4
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 4.0e-200 701.8 444 84.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.8e-187 659.8 434 78.8
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.7e-182 643.3 461 74.4
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.2e-182 642.9 431 78.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 9.1e-176 620.9 421 77.9
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 5.3e-168 595.1 386 78.2
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.1e-160 569.3 518 63.7
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 9.4e-157 557.8 518 63.3
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 2.1e-156 556.6 518 63.3
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 8.8e-155 551.2 519 63.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 8.2e-153 544.7 517 61.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.1e-152 542.7 518 62.4
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.0e-152 541.6 518 62.4
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 9.1e-152 541.2 518 62.4
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.0e-150 537.7 517 59.8
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 4.2e-149 532.3 520 60.0
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.1e-148 530.0 532 57.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 2.3e-147 526.6 509 59.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.7e-145 520.4 530 56.2
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 4.8e-145 518.8 519 59.7
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-144 517.7 457 64.3
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.4e-144 517.3 533 55.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 2.4e-144 516.5 422 64.0
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.1e-144 516.2 537 56.8
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.1e-144 515.8 528 59.8
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 5.4e-144 515.4 528 58.7
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 9.1e-144 514.6 478 61.5
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.2e-143 514.2 528 59.7
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.6e-143 513.8 519 59.2
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 3.5e-143 512.7 502 61.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 3.5e-143 512.7 502 61.2
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 4.5e-143 512.3 481 61.1
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 5.9e-143 511.9 516 58.1
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 7.7e-143 511.5 528 59.3
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.6e-142 508.1 537 57.4
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.5e-141 507.3 481 60.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.9e-141 506.9 528 59.1
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 4.2e-141 505.8 525 56.8
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 7.2e-141 505.0 504 56.7
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 9.5e-141 504.6 509 59.5
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-140 504.2 530 58.9
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 3.6e-140 502.7 499 59.5
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 4.7e-140 502.3 530 56.8
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 6.1e-140 501.9 499 60.7
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.1e-140 501.9 520 56.2
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.4e-139 500.7 496 59.1
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.8e-139 500.4 521 57.2
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.8e-139 500.4 420 62.4
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.6e-138 496.5 511 58.9
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 2.6e-138 496.5 420 61.4
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.7e-137 493.8 501 58.9
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.8e-137 493.0 500 58.0
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 8.3e-137 491.5 506 54.3
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.1e-136 491.1 421 62.5
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.8e-136 490.3 512 55.1
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.4e-136 490.0 511 54.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 4.1e-136 489.2 508 56.7
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.1e-136 489.2 423 61.2
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.1e-136 489.2 478 58.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.2e-135 487.6 513 56.7
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.5e-135 485.7 514 56.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.8e-135 485.0 518 56.2
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.8e-134 482.6 502 56.2
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 8.6e-134 481.5 520 57.9
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.1e-133 481.1 509 58.3
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.3e-133 479.2 377 63.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.1e-132 476.9 519 55.7
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.8e-132 476.5 518 55.8
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 4.7e-132 475.7 519 53.4
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.0e-131 473.0 403 62.3
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 8.9e-131 471.5 477 56.6
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 5.7e-130 468.8 523 53.9
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.1e-128 464.5 482 56.0
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 2.4e-128 463.4 516 55.6
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 5.4e-128 462.2 571 51.3
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 7.0e-128 461.8 530 54.5
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.2e-128 461.5 394 62.4
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.9e-126 456.1 472 55.1
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.9e-126 456.1 523 52.8
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.9e-126 456.1 486 55.1
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 3.9e-126 456.1 507 52.1
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.5e-125 453.4 420 58.1
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 3.6e-124 449.5 510 53.7
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 4.0e-123 446.0 492 55.7
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 4.0e-123 446.0 501 54.7
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 8.9e-123 444.9 522 54.2
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.7e-121 440.7 519 52.8
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.2e-121 440.3 499 54.1
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.9e-121 439.9 523 52.4
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 2.9e-121 439.9 508 52.2
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 5.4e-120 435.6 502 51.6
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 5.4e-120 435.6 467 52.9
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.0e-119 433.7 504 49.4
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.7e-119 433.3 463 55.3
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.9e-117 427.2 443 56.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.3e-117 426.0 501 49.9
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 2.1e-116 423.7 513 49.9
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 8.1e-116 421.8 441 52.8
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 6.8e-115 418.7 516 47.7
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.4e-114 416.0 501 50.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 8.3e-113 411.8 358 63.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 5.6e-109 399.1 435 52.2
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 4.7e-108 396.0 421 51.8
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.5e-106 391.0 438 50.7
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.6e-103 380.9 354 57.3
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.3e-93 346.3 222 82.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 4.3e-93 346.3 321 55.8
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.6e-92 343.2 434 46.5
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.2e-90 338.2 343 54.2
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 4.5e-90 336.3 368 56.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.4e-89 332.4 312 55.8
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 4.6e-87 326.2 465 42.8
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 3.7e-84 316.6 380 48.2
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.6e-79 301.2 413 43.6
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 7.9e-79 298.9 421 43.5
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.8e-78 297.7 350 54.3
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 3.9e-78 296.6 212 71.2
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.9e-65 253.8 186 72.0
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 4.5e-58 229.9 493 37.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 2.1e-55 221.1 353 39.9
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.9e-51 206.1 288 49.7
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 4.5e-50 203.4 335 40.6
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.1e-48 198.7 193 55.4
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.2e-47 195.3 194 51.0
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 6.3e-44 183.0 144 77.1
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 6.1e-39 166.4 460 31.1
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-37 161.8 170 52.9
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 3.5e-34 150.6 266 46.6
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.8e-33 147.1 273 36.6
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 1.6e-31 141.7 118 61.0
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 6.1e-31 139.8 118 59.3
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 5.0e-25 120.2 95 61.1
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.2e-20 104.8 106 56.6
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 4.5e-18 97.1 121 52.9
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.9e-16 91.7 359 24.0
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 4.3e-16 90.5 259 30.1
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.0e-14 84.3 123 42.3
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 8.3e-12 76.3 105 43.8
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.7e-09 68.6 99 45.5
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 2.8e-07 61.2 98 36.7
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 4.7e-07 60.5 87 41.4
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 6.2e-07 60.1 44 61.4


User provided reference genes

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