Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 6.9e-113 410.6 202 100.0
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.5e-110 402.1 202 97.5
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 6.1e-109 397.5 202 94.6
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.3e-107 391.7 202 92.6
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 3.3e-107 391.7 200 95.0
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 3.3e-107 391.7 200 95.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.7e-106 389.4 202 92.1
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.9e-103 378.6 193 93.8
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.9e-103 378.6 202 89.1
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 5.5e-102 374.4 202 88.1
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 7.2e-102 374.0 193 92.7
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.1e-99 366.7 200 85.5
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 4.8e-98 361.3 202 86.6
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 1.4e-97 359.8 202 86.1
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 4.1e-97 358.2 202 84.2
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 4.5e-96 354.8 202 85.1
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 4.5e-96 354.8 202 85.1
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 5.9e-96 354.4 193 87.0
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.5e-94 349.0 194 85.1
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 3.2e-94 348.6 193 86.0
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 6.8e-92 340.9 194 84.0
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 4.4e-83 311.6 202 71.8
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.5e-83 310.8 202 71.8
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 7.5e-83 310.8 202 71.8
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 9.8e-83 310.5 202 73.8
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 8.3e-82 307.4 202 71.3
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 4.1e-81 305.1 202 71.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.6e-79 297.7 199 69.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-78 297.0 199 69.8
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.5e-78 294.7 193 72.5
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.2e-78 294.3 199 68.8
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.0e-76 290.4 193 70.5
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.0e-76 288.9 203 70.4
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 3.0e-76 288.9 203 70.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 4.0e-76 288.5 201 70.6
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 5.2e-76 288.1 202 68.3
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.5e-75 286.6 203 69.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 4.4e-75 285.0 203 69.5
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 9.8e-75 283.9 186 73.7
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.3e-74 283.5 202 67.8
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 4.9e-74 281.6 203 67.5
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.4e-73 280.0 202 66.8
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.4e-73 280.0 203 66.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.8e-73 279.6 202 67.8
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.4e-73 279.3 203 67.0
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.4e-73 279.3 203 67.0
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.2e-73 278.9 154 87.7
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 4.1e-73 278.5 267 54.3
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 7.0e-73 277.7 203 66.5
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.2e-72 276.9 203 68.0
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.2e-72 276.9 203 64.5
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.6e-72 276.6 203 66.5
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.0e-72 276.2 203 66.0
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.0e-71 273.9 203 66.0
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.3e-71 273.5 202 66.8
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 6.6e-71 271.2 203 65.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.2e-69 266.9 201 66.2
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 2.8e-69 265.8 200 64.0
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-69 265.8 200 63.0
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.8e-69 265.8 200 65.0
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 6.1e-69 264.6 200 64.5
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 8.0e-69 264.2 199 62.3
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.8e-68 263.1 200 62.0
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 3.1e-68 262.3 199 64.3
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.1e-68 262.3 193 65.3
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 1.2e-67 260.4 203 64.5
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.6e-67 259.2 202 60.9
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 3.4e-67 258.8 194 63.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 6.4e-66 254.6 202 60.4
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.2e-65 252.3 194 61.9
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 4.1e-65 251.9 201 59.7
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.4e-65 251.5 194 61.9
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.2e-64 250.4 202 60.4
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.2e-64 250.4 202 59.9
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 4.6e-64 248.4 202 60.4
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 2.3e-63 246.1 202 58.4
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.5e-62 243.4 202 58.9
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.9e-62 243.0 202 57.9
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.9e-62 243.0 202 57.9
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.5e-62 242.7 203 59.6
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 2.5e-62 242.7 198 56.6
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 5.6e-62 241.5 202 58.4
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 5.6e-62 241.5 198 57.6
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.7e-61 238.4 202 56.9
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 8.0e-61 237.7 200 59.0
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.8e-60 236.5 199 56.8
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 4.0e-60 235.3 203 59.1
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 5.2e-60 235.0 203 56.7
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 6.8e-60 234.6 146 76.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 7.5e-59 231.1 235 52.3
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 1.3e-58 230.3 229 52.4
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.7e-58 229.9 229 52.4
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.9e-58 228.4 192 59.4
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 4.9e-58 228.4 250 48.8
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 6.4e-58 228.0 197 57.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.9e-57 226.5 198 52.0
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 9.2e-57 224.2 198 54.0
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.6e-56 223.4 172 61.6
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 4.6e-56 221.9 202 57.4
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.0e-56 221.5 232 49.1
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 8.6e-55 217.6 229 49.3
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.5e-54 216.1 228 49.6
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.8e-53 212.6 235 50.2
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 4.7e-53 211.8 192 54.2
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 4.7e-53 211.8 235 49.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.8e-52 209.9 175 57.1
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.1e-52 209.1 209 52.2
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 6.8e-52 208.0 232 49.6
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 6.8e-52 208.0 151 64.9
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.2e-51 207.2 232 49.1
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 3.4e-51 205.7 233 46.8
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 7.6e-51 204.5 226 48.7
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 9.9e-51 204.1 146 68.5
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.7e-50 203.4 111 85.6
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 4.1e-49 198.7 199 44.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 4.1e-49 198.7 155 61.9
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.1e-47 191.8 209 50.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 4.3e-46 188.7 137 65.7
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 9.6e-46 187.6 254 41.3
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.6e-45 186.8 147 60.5
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 8.1e-45 184.5 193 50.8
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.4e-44 183.0 193 43.5
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-43 180.6 194 53.1
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.4e-42 174.9 116 70.7
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.4e-42 174.9 203 44.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.4e-42 174.9 203 44.3
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.9e-41 173.3 152 59.2
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 2.3e-39 166.4 198 43.9
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 3.9e-39 165.6 111 70.3
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 8.7e-39 164.5 200 48.0
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.9e-38 163.3 153 51.6
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.9e-38 163.3 200 43.5
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.3e-37 160.6 185 48.6
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.3e-37 160.6 176 51.7
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.5e-35 153.7 199 37.7
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 3.4e-35 152.5 120 60.8
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.4e-33 145.2 193 40.9
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 9.3e-33 144.4 208 35.6
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.7e-32 142.9 122 54.1
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.0e-32 141.7 202 39.1
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.3e-30 134.8 86 70.9
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 9.6e-30 134.4 115 60.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.6e-29 133.7 82 80.5
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 8.1e-29 131.3 199 34.2
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 9.0e-28 127.9 154 48.7
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.3e-26 124.0 116 54.3
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 9.3e-25 117.9 122 48.4
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 3.9e-23 112.5 200 39.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 6.2e-21 105.1 128 48.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.1e-16 90.1 207 29.5
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.8e-15 87.0 60 68.3
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.0e-15 86.3 58 70.7
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.3e-13 80.9 208 26.0
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 4.5e-11 72.4 70 47.1
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 1.5e-06 57.4 49 46.9
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.5e-06 56.6 51 51.0
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 9.7e-06 54.7 134 27.6


User provided reference genes

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