Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.6e-280 968.8 498 100.0
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.4e-268 929.1 498 95.8
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 1.4e-260 902.5 498 93.2
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.4e-254 881.3 498 90.8
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.5e-244 848.6 498 88.0
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 4.2e-244 847.8 498 87.8
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 3.9e-242 841.3 498 86.1
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 4.8e-240 834.3 498 85.7
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.4e-239 832.8 498 85.5
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.8e-239 832.4 517 83.4
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.2e-236 821.2 518 82.4
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-235 819.7 488 86.1
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 6.5e-221 770.8 504 81.0
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 5.7e-217 757.7 504 78.2
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 4.8e-216 754.6 517 76.8
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.3e-215 751.1 504 77.6
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 7.0e-215 750.7 517 76.6
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.2e-214 750.0 508 76.8
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 9.4e-212 740.3 504 76.6
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.9e-206 721.1 518 73.9
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 3.8e-205 718.4 530 72.3
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.0e-202 710.3 519 72.8
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 8.8e-202 707.2 519 72.6
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 8.8e-202 707.2 519 73.2
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 3.4e-201 705.3 519 73.4
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 4.5e-198 694.9 505 72.9
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 6.6e-197 691.0 528 67.8
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 8.6e-197 690.6 516 69.4
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.5e-196 689.1 516 69.8
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 7.2e-196 687.6 514 68.7
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.2e-195 686.8 515 68.9
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 4.7e-195 684.9 515 67.8
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 8.0e-195 684.1 516 69.8
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 8.0e-195 684.1 517 68.5
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.0e-194 683.7 516 68.0
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.4e-194 683.3 528 67.2
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.4e-194 683.3 528 67.2
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 1.4e-194 683.3 518 69.1
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.8e-194 682.9 529 67.3
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.8e-194 682.9 514 67.9
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 2.3e-194 682.6 514 68.1
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 3.0e-194 682.2 515 68.7
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.2e-193 680.2 529 68.2
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 2.6e-193 679.1 530 67.4
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 1.3e-192 676.8 519 68.0
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 4.9e-192 674.9 526 66.7
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.1e-191 673.7 521 67.9
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.4e-191 672.5 528 66.7
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 9.2e-191 670.6 513 67.1
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 9.2e-191 670.6 510 67.3
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 9.2e-191 670.6 516 66.7
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.6e-190 669.8 514 66.3
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 4.6e-190 668.3 530 65.7
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.0e-189 667.2 516 66.5
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 2.3e-189 666.0 512 66.0
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 8.6e-189 664.1 514 66.9
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 5.6e-188 661.4 527 64.9
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.2e-187 660.2 514 66.1
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 2.8e-187 659.1 505 66.5
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 3.6e-187 658.7 529 64.5
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.4e-186 656.8 509 66.0
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 1.8e-186 656.4 528 65.0
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 2.3e-186 656.0 515 65.8
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 5.2e-186 654.8 568 62.5
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 5.2e-186 654.8 514 66.1
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 1.5e-185 653.3 518 65.4
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 4.4e-185 651.7 510 66.1
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 4.4e-185 651.7 511 66.1
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 7.5e-185 651.0 515 64.3
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 7.5e-185 651.0 508 66.1
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 9.8e-185 650.6 516 65.7
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.7e-184 649.8 511 66.1
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.9e-184 649.0 530 65.8
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 3.7e-184 648.7 516 65.7
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 3.7e-184 648.7 500 66.4
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 4.9e-184 648.3 523 64.4
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 4.9e-184 648.3 521 63.3
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.9e-184 648.3 524 64.9
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 8.3e-184 647.5 557 61.0
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.9e-183 646.4 511 64.4
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 3.2e-183 645.6 511 65.8
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 4.1e-183 645.2 511 63.8
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 5.4e-183 644.8 530 63.2
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 3.0e-181 639.0 507 66.9
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 2.5e-180 636.0 519 63.6
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 3.6e-179 632.1 537 61.8
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 5.2e-178 628.2 497 64.8
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 2.6e-177 625.9 463 69.1
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 5.1e-173 611.7 501 63.5
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 3.3e-172 609.0 509 61.7
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 2.3e-170 602.8 486 66.0
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 2.6e-169 599.4 538 59.5
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.9e-167 593.2 505 62.6
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.1e-167 592.0 502 62.4
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 3.9e-165 585.5 525 58.7
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 5.1e-165 585.1 513 61.2
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.4e-162 577.0 548 57.8
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.2e-161 573.9 516 60.5
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 8.4e-160 567.8 509 58.5
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.0e-157 559.3 435 66.2
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 6.6e-157 558.1 527 58.3
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 3.3e-156 555.8 509 58.2
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 4.3e-156 555.4 517 56.3
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.9e-151 540.0 438 63.9
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 1.0e-149 534.3 511 57.3
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 4.3e-148 528.9 437 63.2
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 2.4e-146 523.1 463 60.3
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 9.0e-146 521.2 514 55.8
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 2.1e-142 510.0 492 55.1
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 6.1e-126 455.3 445 56.9
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 1.4e-117 427.6 395 58.7
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.8e-117 427.2 356 63.5
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 2.5e-116 423.3 529 45.6
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 7.4e-116 421.8 518 46.3
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 4.7e-110 402.5 387 56.3
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 2.3e-109 400.2 495 44.2
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 7.0e-98 362.1 471 44.8
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 1.8e-85 320.9 472 44.7
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.9e-50 204.5 139 74.1
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-45 188.3 137 74.5
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 2.6e-44 184.1 431 34.6
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 9.3e-42 175.6 123 69.1
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 5.1e-32 143.3 284 37.7
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-31 142.1 99 76.8
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 4.3e-23 113.6 78 69.2
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 9.6e-23 112.5 72 72.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-21 107.1 143 36.4
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.6e-20 104.4 79 64.6
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 4.9e-19 100.1 99 52.5
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 7.9e-17 92.8 81 65.4
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 7.9e-17 92.8 72 66.7
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 2.4e-13 81.3 232 28.0
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-09 68.6 53 52.8
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 3.6e-09 67.4 40 85.0


User provided reference genes

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