Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G40160 Arabidopsis lyrata HOM05D000877 ORTHO05D006099 3.0e-72 275.0 133 100.0
AT5G14950 Arabidopsis thaliana HOM05D000877 ORTHO05D006099 6.2e-70 267.3 130 98.5
Sp6g29100 Schrenkiella parvula HOM05D000877 ORTHO05D006099 4.9e-67 257.7 131 93.9
Thhalv10012487m.g Eutrema salsugineum HOM05D000877 ORTHO05D006099 6.5e-67 257.3 131 93.1
CARHR198360 Cardamine hirsuta HOM05D000877 ORTHO05D006099 8.4e-67 256.9 132 95.5
Carub.0006s1311 Capsella rubella HOM05D000877 ORTHO05D006099 9.3e-66 253.4 131 92.4
Aa31LG11G14550 Aethionema arabicum HOM05D000877 ORTHO05D006099 1.3e-59 233.0 131 83.2
BcaC03g13442 Brassica carinata HOM05D000877 ORTHO05D006099 5.5e-58 227.6 130 84.6
C02p07410 Brassica napus HOM05D000877 ORTHO05D006099 5.5e-58 227.6 130 84.6
BolC2t06672H Brassica oleracea HOM05D000877 ORTHO05D006099 5.5e-58 227.6 130 84.6
BraA03t10011Z Brassica rapa HOM05D000877 ORTHO05D006099 6.1e-57 224.2 136 84.6
A03p06880 Brassica napus HOM05D000877 ORTHO05D006099 1.0e-56 223.4 138 83.3
A02p02790 Brassica napus HOM05D000877 ORTHO05D006099 1.4e-56 223.0 131 84.0
BraA02t05252Z Brassica rapa HOM05D000877 ORTHO05D006099 1.4e-56 223.0 131 84.0
BcaB01g05088 Brassica carinata HOM05D000877 ORTHO05D006099 8.8e-56 220.3 134 83.6
C03p07880 Brassica napus HOM05D000877 ORTHO05D006099 8.8e-56 220.3 134 83.6
BolC3t13286H Brassica oleracea HOM05D000877 ORTHO05D006099 8.8e-56 220.3 134 83.6
Eucgr.J02166 Eucalyptus grandis HOM05D000877 ORTHO05D006099 3.2e-50 201.8 132 75.0
Manes.15G179800 Manihot esculenta HOM05D000877 ORTHO05D006099 1.6e-49 199.5 137 69.3
MD09G1040900 Malus domestica HOM05D000877 ORTHO05D006099 3.6e-49 198.4 132 68.2
PGR083G2584 Punica granatum HOM05D000877 ORTHO05D006099 1.0e-48 196.8 132 75.0
TAR371G0342 Trochodendron aralioides HOM05D000877 ORTHO05D006099 1.8e-48 196.1 135 68.1
Prupe.3G276800 Prunus persica HOM05D000877 ORTHO05D006099 2.3e-48 195.7 136 65.4
TWI56G0224 Tripterygium wilfordii HOM05D000877 ORTHO05D006099 3.0e-48 195.3 128 73.4
MD17G1042200 Malus domestica HOM05D000877 ORTHO05D006099 8.8e-48 193.7 132 66.7
Atru.chr6.2159 Acer truncatum HOM05D000877 ORTHO05D006099 3.3e-47 191.8 122 75.4
Haze_14617 Corylus avellana HOM05D000877 ORTHO05D006099 3.3e-47 191.8 132 70.5
COL.COLO4_29856 Corchorus olitorius HOM05D000877 ORTHO05D006099 5.7e-47 191.0 132 68.2
Thecc.04G066700 Theobroma cacao HOM05D000877 ORTHO05D006099 5.7e-47 191.0 132 68.2
CSS0011412 Camellia sinensis var. sinensis HOM05D000877 ORTHO05D006099 7.4e-47 190.7 130 70.8
CSS0034720 Camellia sinensis var. sinensis HOM05D000877 ORTHO05D006099 7.4e-47 190.7 130 70.8
Cfa007480 Carpinus fangiana HOM05D000877 ORTHO05D006099 1.3e-46 189.9 132 70.5
FAN05G2327 Fragaria x ananassa HOM05D000877 ORTHO05D006099 1.3e-46 189.9 134 71.6
Gohir.A07G217200 Gossypium hirsutum HOM05D000877 ORTHO05D006099 1.7e-46 189.5 132 68.9
TAR629G1000 Trochodendron aralioides HOM05D000877 ORTHO05D006099 2.8e-46 188.7 136 66.2
Dinv35009 Davidia involucrata HOM05D000877 ORTHO05D006099 4.8e-46 188.0 135 66.7
Aqoxy3G03133 Aquilegia oxysepala HOM05D000877 ORTHO05D006099 8.2e-46 187.2 135 67.4
RcHm_v2.0_Chr2g0170081 Rosa chinensis HOM05D000877 ORTHO05D006099 8.2e-46 187.2 136 68.4
FvH4_6g49910 Fragaria vesca HOM05D000877 ORTHO05D006099 1.1e-45 186.8 133 70.7
Gohir.D07G224200 Gossypium hirsutum HOM05D000877 ORTHO05D006099 1.1e-45 186.8 132 67.4
Gorai.001G258600 Gossypium raimondii HOM05D000877 ORTHO05D006099 1.1e-45 186.8 132 67.4
Actinidia06049 Actinidia chinensis HOM05D000877 ORTHO05D006099 1.4e-45 186.4 134 66.4
FAN09G1274 Fragaria x ananassa HOM05D000877 ORTHO05D006099 1.4e-45 186.4 134 69.4
Nn4g22930 Nelumbo nucifera HOM05D000877 ORTHO05D006099 1.4e-45 186.4 135 64.4
Duzib264G0998 Durio zibethinus HOM05D000877 ORTHO05D006099 1.8e-45 186.0 132 66.7
FAN02G4060 Fragaria x ananassa HOM05D000877 ORTHO05D006099 1.8e-45 186.0 134 69.4
Actinidia36056 Actinidia chinensis HOM05D000877 ORTHO05D006099 3.1e-45 185.3 134 67.9
MELO3C009914.2 Cucumis melo HOM05D000877 ORTHO05D006099 3.1e-45 185.3 131 67.2
GSVIVG01032586001 Vitis vinifera HOM05D000877 ORTHO05D006099 3.1e-45 185.3 132 68.2
Gohir.D09G023400 Gossypium hirsutum HOM05D000877 ORTHO05D006099 5.3e-45 184.5 132 66.7
CsaV3_3G041960 Cucumis sativus L. HOM05D000877 ORTHO05D006099 7.0e-45 184.1 131 67.2
PSO478G2265 Papaver somniferum HOM05D000877 ORTHO05D006099 7.0e-45 184.1 132 68.9
Hma1.2p1_0849F.1_g228092 Hydrangea macrophylla HOM05D000877 ORTHO05D006099 9.1e-45 183.7 135 65.9
Lalb_Chr06g0176531 Lupinus albus HOM05D000877 ORTHO05D006099 1.2e-44 183.3 137 68.6
Oeu050233.1 Olea europaea HOM05D000877 ORTHO05D006099 1.2e-44 183.3 131 67.9
PSO161G0067 Papaver somniferum HOM05D000877 ORTHO05D006099 1.2e-44 183.3 132 68.9
Cc07_g02730 Coffea canephora HOM05D000877 ORTHO05D006099 2.6e-44 182.2 133 68.4
Gohir.A09G024200 Gossypium hirsutum HOM05D000877 ORTHO05D006099 2.6e-44 182.2 132 65.9
Gorai.006G027500 Gossypium raimondii HOM05D000877 ORTHO05D006099 2.6e-44 182.2 132 65.9
Hma1.2p1_0849F.1_g228094 Hydrangea macrophylla HOM05D000877 ORTHO05D006099 2.6e-44 182.2 134 65.7
Medtr4g071680 Medicago truncatula HOM05D000877 ORTHO05D006099 2.6e-44 182.2 131 67.2
Medtr6g008850 Medicago truncatula HOM05D000877 ORTHO05D006099 2.6e-44 182.2 131 67.2
ClCG10G014620 Citrullus lanatus HOM05D000877 ORTHO05D006099 4.5e-44 181.4 131 66.4
Ciclev10014083m.g Citrus clementina HOM05D000877 ORTHO05D006099 4.5e-44 181.4 141 66.0
FAN14G5633 Fragaria x ananassa HOM05D000877 ORTHO05D006099 4.5e-44 181.4 133 69.2
DCAR_011189 Daucus carota HOM05D000877 ORTHO05D006099 7.7e-44 180.6 133 63.9
Duzib147G0134 Durio zibethinus HOM05D000877 ORTHO05D006099 1.0e-43 180.3 132 66.7
Lj2g0013078 Lotus japonicus HOM05D000877 ORTHO05D006099 1.0e-43 180.3 137 65.7
Ca_04234_v3 Cicer arietinum L. HOM05D000877 ORTHO05D006099 1.7e-43 179.5 140 65.7
Migut.H00173 Erythranthe guttata HOM05D000877 ORTHO05D006099 2.9e-43 178.7 130 65.4
Solyc02g087290.3 Solanum lycopersicum HOM05D000877 ORTHO05D006099 2.9e-43 178.7 130 65.4
Sopen02g032050 Solanum pennellii HOM05D000877 ORTHO05D006099 2.9e-43 178.7 130 65.4
ECA238G2186 Erigeron canadensis HOM05D000877 ORTHO05D006099 3.8e-43 178.3 134 65.7
HanXRQChr14g0448861 Helianthus annuus HOM05D000877 ORTHO05D006099 3.8e-43 178.3 139 63.3
Lsat_1_v5_gn_2_90780 Lactuca sativa HOM05D000877 ORTHO05D006099 6.5e-43 177.6 141 63.1
Phvul.004G022500 Phaseolus vulgaris HOM05D000877 ORTHO05D006099 1.1e-42 176.8 137 65.0
SGA_v2.0_scaffold135G34823 Striga asiatica HOM05D000877 ORTHO05D006099 1.1e-42 176.8 128 67.2
VMungo0464G1235 Vigna mungo HOM05D000877 ORTHO05D006099 1.1e-42 176.8 137 66.4
Glyma.19G015900 Glycine max HOM05D000877 ORTHO05D006099 1.4e-42 176.4 137 64.2
PGSC0003DMG400001394 Solanum tuberosum HOM05D000877 ORTHO05D006099 1.4e-42 176.4 130 64.6
unitig_699.g19885 Utricularia gibba HOM05D000877 ORTHO05D006099 1.9e-42 176.0 131 64.1
Potri.001G350400 Populus trichocarpa HOM05D000877 ORTHO05D006099 3.2e-42 175.3 146 60.3
Ah.16g102250 Amaranthus hybridus HOM05D000877 ORTHO05D006099 4.2e-42 174.9 135 67.4
Sed0005677 Sechium edule HOM05D000877 ORTHO05D006099 4.2e-42 174.9 130 62.3
TPR.G32573 Trifolium pratense HOM05D000877 ORTHO05D006099 5.5e-42 174.5 140 62.1
Hund13754 Selenicereus undatus HOM05D000877 ORTHO05D006099 7.2e-42 174.1 132 66.7
arahy.Tifrunner.gnm1.ann1.69HWTH Arachis hypogaea HOM05D000877 ORTHO05D006099 1.2e-41 173.3 137 64.2
arahy.Tifrunner.gnm1.ann1.L4IVZW Arachis hypogaea HOM05D000877 ORTHO05D006099 1.2e-41 173.3 137 64.2
Nitab4.5_0007185g0040 Nicotiana tabacum HOM05D000877 ORTHO05D006099 1.6e-41 172.9 124 64.5
MBI15_g13304_MAGBIO Magnolia biondii HOM05D000877 ORTHO05D006099 2.1e-41 172.6 133 61.7
Sabra16G0229900 Salix brachista HOM05D000877 ORTHO05D006099 2.1e-41 172.6 142 61.3
AUR62014574 Chenopodium quinoa HOM05D000877 ORTHO05D006099 2.7e-41 172.2 136 65.4
CiPaw.03G033300 Carya illinoinensis HOM05D000877 ORTHO05D006099 3.6e-41 171.8 135 62.2
Potri.017G073900 Populus trichocarpa HOM05D000877 ORTHO05D006099 3.6e-41 171.8 143 60.8
MSTRG.3199 Avicennia marina HOM05D000877 ORTHO05D006099 6.1e-41 171.0 129 64.3
RhsimUnG0168300 Rhododendron simsii HOM05D000877 ORTHO05D006099 8.0e-41 170.6 101 78.2
QL02p078595 Quercus lobata HOM05D000877 ORTHO05D006099 1.8e-40 169.5 140 60.7
CAN.G206.66 Capsicum annuum HOM05D000877 ORTHO05D006099 3.0e-40 168.7 131 60.3
Hund16097 Selenicereus undatus HOM05D000877 ORTHO05D006099 5.2e-40 167.9 130 63.8
Sc11g0007990 Simmondsia chinensis HOM05D000877 ORTHO05D006099 5.2e-40 167.9 134 62.7
MSTRG.23976 Avicennia marina HOM05D000877 ORTHO05D006099 6.7e-40 167.5 130 63.8
EL10Ac2g04636 Beta vulgaris HOM05D000877 ORTHO05D006099 6.7e-40 167.5 135 63.7
Lj7A407G44 Lonicera japonica HOM05D000877 ORTHO05D006099 6.7e-40 167.5 95 77.9
HPP92_010829 Vanilla planifolia HOM05D000877 ORTHO05D006099 1.1e-39 166.8 136 60.3
vmacro05784 Vaccinium macrocarpon HOM05D000877 ORTHO05D006099 1.5e-39 166.4 124 66.1
CDE04G3424 Ceratophyllum demersum HOM05D000877 ORTHO05D006099 4.4e-39 164.9 134 60.4
Lalb_Chr02g0159851 Lupinus albus HOM05D000877 ORTHO05D006099 7.4e-39 164.1 129 63.6
CDE07G1089 Ceratophyllum demersum HOM05D000877 ORTHO05D006099 1.7e-38 162.9 130 61.5
AUR62039387 Chenopodium quinoa HOM05D000877 ORTHO05D006099 2.4e-37 159.1 118 66.9
ATR0712G018 Amborella trichopoda HOM05D000877 ORTHO05D006099 9.1e-37 157.1 92 78.3
Zm00001eb371770 Zea mays HOM05D000877 ORTHO05D006099 5.0e-35 151.4 144 56.2
SEGI_10281 Sequoiadendron giganteum HOM05D000877 ORTHO05D006099 1.2e-31 140.2 134 53.7
Peaxi162Scf00129g00742 Petunia axillaris HOM05D000877 ORTHO05D006099 2.0e-31 139.4 110 59.1
Pp3c23_10010 Physcomitrium patens HOM05D000877 ORTHO05D006099 9.1e-29 130.6 146 50.7
SMO196G0126 Selaginella moellendorffii HOM05D000877 ORTHO05D006099 3.8e-27 125.2 79 65.8
Mapoly0060s0008 Marchantia polymorpha HOM05D000877 ORTHO05D006099 8.5e-27 124.0 83 65.1
CBR_g22453 Chara braunii HOM05D000877 ORTHO05D006099 5.0e-19 98.2 76 52.6
CBR_g55161 Chara braunii HOM05D000877 ORTHO05D006099 2.5e-18 95.9 92 44.6
Cpa.g.c36966 Carica papaya HOM05D000877 ORTHO05D006099 1.6e-12 76.6 38 84.2
CARHR104420 Cardamine hirsuta HOM05D000877 ORTHO05D006099 7.8e-12 74.3 37 89.2
HanXRQChr01g0021991 Helianthus annuus HOM05D000877 ORTHO05D006099 3.4e-07 58.9 29 86.2


User provided reference genes

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