Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 0.0e+00 2689.1 1425 100.0
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.6e-216 757.7 1461 42.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 4.6e-211 739.6 1382 42.6
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.3e-202 710.7 1432 41.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 5.1e-202 709.5 1405 40.9
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.4e-196 691.4 1401 41.8
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.5e-195 686.8 1476 40.7
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 8.2e-192 675.6 1379 40.0
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 3.1e-191 673.7 1379 40.0
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.7e-181 641.3 1827 36.6
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.2e-179 635.2 1827 36.4
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.4e-175 621.7 1808 35.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.5e-174 618.2 1367 39.9
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 5.9e-174 616.3 1372 38.4
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 8.8e-170 602.4 1263 38.7
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 2.1e-163 581.3 1330 36.4
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.7e-126 458.0 653 48.4
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 4.4e-105 387.5 887 39.5
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.2e-97 362.8 878 39.0
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 6.4e-96 357.1 840 38.6
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.1e-95 356.3 824 39.6
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 4.6e-94 350.9 920 37.1
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 4.6e-94 350.9 751 41.7
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 3.0e-93 348.2 620 45.5
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 9.6e-92 343.2 848 33.5
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.8e-91 341.7 805 38.9
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.5e-89 335.9 698 42.3
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 7.6e-89 333.6 806 38.8
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 3.8e-88 331.3 1096 35.4
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 4.9e-88 330.9 588 45.6
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.9e-87 328.9 830 38.4
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 2.1e-86 325.5 677 42.7
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.1e-86 325.5 618 44.2
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.7e-86 325.1 669 43.2
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 3.5e-86 324.7 581 45.6
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-85 323.2 802 38.3
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-85 323.2 618 44.0
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.3e-85 322.8 630 43.7
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.8e-85 322.4 573 44.5
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.1e-84 319.7 883 36.2
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.5e-84 318.5 580 45.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.5e-84 318.5 686 39.8
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 7.4e-84 317.0 898 37.8
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 7.4e-84 317.0 650 41.8
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 2.1e-83 315.5 721 41.2
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.1e-83 315.5 802 37.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 6.2e-83 313.9 441 52.8
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.1e-82 313.2 1050 34.5
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.4e-82 312.8 908 36.0
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 3.1e-82 311.6 927 36.2
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 3.1e-82 311.6 660 43.0
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 4.0e-82 311.2 577 44.9
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 5.3e-82 310.8 577 44.9
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 9.0e-82 310.1 585 46.0
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 1.0e-80 306.6 626 42.2
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.3e-80 306.2 586 42.0
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 2.2e-80 305.4 631 42.8
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 3.8e-80 304.7 1112 33.2
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 8.4e-80 303.5 1073 32.5
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 4.2e-79 301.2 632 41.9
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 9.3e-79 300.1 567 43.4
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.2e-78 299.7 589 43.5
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.6e-78 299.3 1085 32.4
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 4.6e-78 297.7 1247 31.6
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 6.0e-78 297.4 626 42.0
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.3e-77 296.2 729 40.6
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 2.3e-77 295.4 631 42.5
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 5.1e-77 294.3 643 41.5
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 8.7e-77 293.5 552 44.0
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.9e-76 292.4 826 36.8
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.3e-76 291.6 613 42.6
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 5.7e-76 290.8 735 38.0
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.8e-75 288.5 798 37.6
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.1e-74 286.6 872 35.6
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.4e-74 285.4 587 41.9
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.5e-73 282.7 628 41.9
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 2.6e-73 282.0 715 38.3
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 3.4e-73 281.6 773 36.1
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.8e-73 280.8 480 47.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 1.3e-72 279.6 553 44.3
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.3e-72 279.6 652 41.1
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.9e-71 275.8 591 33.3
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 4.2e-71 274.6 489 46.4
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 2.7e-70 271.9 523 44.2
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 2.7e-70 271.9 449 48.3
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 6.7e-69 267.3 523 44.2
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 7.4e-68 263.8 1046 31.0
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 6.3e-67 260.8 653 40.3
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 1.1e-66 260.0 1040 30.9
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-65 256.5 544 42.5
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 7.7e-65 253.8 596 39.6
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.4e-63 249.6 619 40.7
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 9.4e-63 246.9 710 36.1
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.6e-62 244.6 932 31.9
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 7.9e-62 243.8 169 73.4
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.4e-61 243.0 504 44.0
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.1e-60 240.0 499 42.5
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 4.3e-60 238.0 601 37.6
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 5.3e-58 231.1 676 32.5
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 9.1e-58 230.3 732 35.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 7.7e-57 227.3 663 35.3
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.7e-54 218.8 565 38.6
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.3e-53 215.7 742 35.8
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.0e-52 212.6 491 35.6
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 5.3e-50 204.5 424 35.8
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.2e-49 203.4 540 36.1
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.2e-48 199.1 380 38.9
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 5.7e-44 184.5 689 34.3
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.3e-43 183.3 329 46.2
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 6.3e-43 181.0 277 51.6
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 4.5e-41 174.9 668 34.4
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.5e-39 169.1 454 32.8
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.6e-36 159.1 532 29.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.8e-35 154.8 254 37.8
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 2.0e-28 132.9 127 57.5
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 3.4e-28 132.1 220 37.7
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.9e-27 128.3 501 30.1
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 8.3e-27 127.5 631 32.6
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.1e-26 127.1 81 72.8
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 1.2e-22 113.6 206 54.9
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 8.0e-22 110.9 209 42.1
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 9.8e-20 104.0 137 43.8
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.1e-15 90.5 626 25.2
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 4.3e-15 88.6 105 49.5
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 7.3e-15 87.8 143 39.2
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 4.7e-14 85.1 193 31.1
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 8.9e-13 80.9 246 31.3
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.2e-11 76.3 205 28.8
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 8.3e-11 74.3 128 39.8
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 3.0e-08 65.9 94 48.9
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.1e-07 63.9 144 32.6


User provided reference genes

Program Settings