Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 5.5e-311 1070.5 673 100.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.7e-277 959.1 672 90.8
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.4e-274 949.5 673 81.4
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 7.6e-273 943.7 674 90.1
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.1e-261 904.4 667 87.1
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-253 880.2 670 85.2
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.0e-253 880.2 670 85.2
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.3e-253 879.0 673 85.1
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.5e-252 876.3 670 85.2
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.9e-252 875.9 670 84.9
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.5e-252 875.5 670 84.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 3.3e-252 875.2 670 84.8
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 6.2e-251 870.9 679 84.7
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.1e-250 870.2 663 86.0
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.4e-250 869.0 670 84.6
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.4e-249 865.1 670 84.6
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.5e-249 864.8 672 84.1
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.8e-248 861.7 663 85.2
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.5e-244 849.7 674 82.2
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 8.8e-237 823.9 674 79.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 5.7e-212 741.5 668 74.4
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.9e-207 726.5 655 73.9
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 7.2e-207 724.5 670 73.0
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 3.6e-206 722.2 655 74.7
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.0e-205 720.7 665 73.5
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 8.8e-205 717.6 655 73.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 2.4e-202 709.5 670 72.8
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 7.0e-202 708.0 656 70.7
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 2.7e-201 706.1 669 73.4
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 4.2e-199 698.7 671 68.9
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 9.5e-199 697.6 676 71.7
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 4.7e-198 695.3 674 71.5
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 4.0e-197 692.2 668 71.6
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 4.0e-197 692.2 697 66.9
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.2e-196 690.6 663 73.2
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.0e-196 689.9 669 69.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 4.4e-196 688.7 664 72.0
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 4.4e-196 688.7 646 72.1
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.4e-194 683.7 662 72.1
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.8e-194 683.3 680 68.7
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 5.9e-193 678.3 652 71.8
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 7.8e-193 677.9 663 71.9
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.8e-190 669.5 643 72.3
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 6.8e-189 664.8 656 70.0
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.6e-188 662.9 620 73.4
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 4.4e-188 662.1 649 68.0
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.3e-187 660.6 652 69.3
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 2.9e-187 659.4 659 67.4
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 8.3e-187 657.9 557 77.6
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.4e-186 657.1 646 72.1
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.9e-186 656.8 634 72.4
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.2e-186 656.0 661 64.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 3.2e-186 656.0 667 66.9
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 5.4e-186 655.2 655 70.7
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.4e-186 655.2 668 68.3
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 5.4e-186 655.2 662 69.5
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 7.0e-186 654.8 655 70.5
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 7.0e-186 654.8 659 68.6
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 9.2e-186 654.4 668 68.3
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.2e-185 654.1 654 62.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.6e-185 653.7 659 70.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.0e-185 653.3 659 69.5
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 2.0e-185 653.3 631 68.9
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 2.7e-185 652.9 671 66.6
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.6e-185 652.1 668 61.8
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 6.0e-185 651.7 677 58.6
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 1.0e-184 651.0 655 70.5
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.3e-184 650.6 668 63.9
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.0e-184 649.4 669 68.2
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 3.9e-184 649.0 659 69.8
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 5.0e-184 648.7 654 64.5
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 6.6e-184 648.3 663 69.7
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.9e-183 646.7 667 69.4
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 5.6e-183 645.2 668 69.2
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 9.5e-183 644.4 670 64.2
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 9.5e-183 644.4 621 71.7
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 9.5e-183 644.4 671 69.9
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.6e-182 643.7 658 68.8
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 8.1e-182 641.3 661 68.1
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 5.2e-181 638.6 665 67.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 5.2e-181 638.6 660 67.0
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 8.9e-181 637.9 660 68.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.2e-180 637.5 657 67.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.0e-180 636.7 656 68.1
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.4e-180 636.0 577 72.1
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 4.4e-180 635.6 678 63.4
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 2.9e-179 632.9 689 67.2
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 2.9e-179 632.9 652 69.2
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 4.9e-179 632.1 665 68.9
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 8.3e-179 631.3 646 70.3
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.1e-178 630.9 685 68.6
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.9e-178 630.2 664 65.5
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.9e-178 630.2 667 66.0
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.4e-178 629.8 648 68.2
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 5.4e-178 628.6 685 62.2
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 9.2e-178 627.9 685 65.5
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 2.7e-177 626.3 685 65.5
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.7e-176 623.6 664 63.7
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 6.6e-176 621.7 654 68.7
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 8.9e-173 611.3 702 56.8
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.7e-171 607.1 562 64.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.2e-169 600.9 695 63.6
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 7.8e-169 598.2 649 66.1
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.5e-167 594.0 671 65.6
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.9e-167 593.6 582 71.0
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 4.4e-164 582.4 589 69.4
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.5e-159 567.4 654 57.6
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.5e-159 566.6 667 58.6
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 6.9e-157 558.5 655 62.1
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 9.6e-151 538.1 525 76.0
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 9.6e-151 538.1 606 59.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.1e-146 524.6 673 53.9
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 5.3e-141 505.8 623 55.1
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.0e-139 501.5 525 71.2
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.0e-136 491.5 668 59.9
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.3e-134 482.3 674 51.3
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.5e-130 470.3 512 70.7
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.0e-128 464.9 508 70.9
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.8e-126 456.8 616 52.3
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 7.7e-124 448.7 724 54.4
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.2e-121 441.4 506 64.0
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 2.2e-118 430.6 496 60.3
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 3.2e-114 416.8 520 48.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.4e-112 411.4 514 57.6
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.8e-109 401.0 244 78.7
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.7e-107 394.4 267 74.5
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.7e-97 359.8 293 64.2
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.6e-92 344.7 304 60.9
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.7e-92 344.0 485 61.6
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 4.2e-90 336.7 280 65.0
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 5.2e-88 329.7 252 65.5
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 4.7e-81 306.6 475 50.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 4.1e-77 293.5 173 83.2
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.7e-76 290.8 200 71.0
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 3.9e-75 287.0 296 53.0
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.8e-72 278.1 303 48.8
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 6.8e-72 276.2 304 82.9
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 3.5e-68 263.8 319 73.4
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 2.1e-60 238.0 288 49.3
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 4.6e-60 236.9 139 84.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.1e-56 225.7 164 67.7
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 2.2e-54 218.0 201 56.2
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 3.9e-51 207.2 293 44.7
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 8.1e-49 199.5 111 87.4
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 3.4e-47 194.1 111 85.6
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.9e-46 191.0 223 47.1
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.1e-40 171.0 289 74.4
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.1e-37 162.5 83 88.0
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-36 159.1 167 51.5
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.6e-36 158.7 567 33.2
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 6.7e-35 153.3 154 53.9
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.8e-33 147.9 180 47.2
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 1.1e-29 136.0 475 45.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-29 134.8 323 52.6
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.2e-25 120.2 95 60.0
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-24 119.4 98 58.2
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 3.1e-24 117.9 556 30.6
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.9e-24 116.7 107 55.1
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.0e-23 115.2 98 58.2
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 7.6e-23 113.2 69 79.7
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.3e-22 112.5 159 38.4
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.8e-19 102.1 68 72.1
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 2.3e-19 101.7 64 75.0
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 2.5e-18 98.2 112 47.3
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 7.4e-18 96.7 64 71.9
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.4e-16 92.4 66 66.7
C01p48850 Brassica napus HOM05D003766 ORTHO05D024562 1.5e-15 89.0 75 64.0
C07p05440 Brassica napus HOM05D003766 ORTHO05D004607 3.4e-15 87.8 75 64.0
C08p01500 Brassica napus HOM05D003766 ORTHO05D004607 3.4e-15 87.8 75 64.0
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 4.5e-15 87.4 84 59.5
A05p35980 Brassica napus HOM05D003766 ORTHO05D024562 1.0e-14 86.3 75 61.3
BraA05t22404Z Brassica rapa HOM05D003766 ORTHO05D024562 1.0e-14 86.3 75 61.3
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 3.8e-14 84.3 126 39.7
A05p18430 Brassica napus HOM05D003766 ORTHO05D024562 1.1e-13 82.8 75 60.0
BraA05t20733Z Brassica rapa HOM05D003766 ORTHO05D024562 1.1e-13 82.8 75 60.0
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.2e-12 79.3 75 56.0
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 2.7e-12 78.2 49 73.5
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 3.6e-12 77.8 54 66.7
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.0e-11 74.7 68 52.9
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-10 72.8 149 36.2
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 4.3e-10 70.9 118 39.8
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 9.7e-10 69.7 45 73.3
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 2.2e-09 68.6 59 57.6
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 6.9e-08 63.5 62 45.2
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 5.9e-07 60.5 68 50.0
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.9e-07 60.5 54 46.3


User provided reference genes

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