Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.5e-72 276.6 192 100.0
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 8.5e-60 234.2 175 83.4
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 7.2e-59 231.1 181 80.1
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 9.4e-59 230.7 178 89.3
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 9.4e-59 230.7 181 80.7
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.7e-58 229.2 177 80.2
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.7e-55 219.9 177 81.4
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 9.1e-54 214.2 177 75.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.5e-53 213.4 177 71.2
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.5e-53 213.4 177 71.2
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 2.0e-53 213.0 177 76.3
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 4.2e-51 205.3 178 74.7
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.0e-41 174.1 169 62.7
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.7e-31 139.0 93 77.4
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 3.7e-31 139.0 93 77.4
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 8.2e-31 137.9 92 77.2
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 7.0e-30 134.8 93 75.3
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.6e-29 133.7 93 74.2
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.5e-29 132.1 93 74.2
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 4.5e-29 132.1 93 73.1
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.9e-29 131.7 91 75.8
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.0e-28 131.0 93 71.0
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 1.0e-28 131.0 93 71.0
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.0e-28 131.0 93 72.0
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.7e-28 130.2 93 72.0
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.2e-28 129.8 93 72.0
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.9e-28 129.4 93 71.0
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 6.5e-28 128.3 93 69.9
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.5e-27 127.1 94 71.3
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 3.2e-27 125.9 89 71.9
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 3.2e-27 125.9 93 69.9
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.2e-27 125.6 92 70.7
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 7.2e-27 124.8 93 68.8
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 9.4e-27 124.4 93 68.8
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 9.4e-27 124.4 92 69.6
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.2e-26 124.0 93 67.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.6e-26 123.6 93 65.6
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.6e-26 123.6 93 69.9
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 6.1e-26 121.7 93 71.0
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.0e-25 120.9 93 63.4
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.0e-25 120.9 93 63.4
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.4e-25 120.6 101 63.4
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.8e-25 120.2 101 64.4
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.3e-25 119.8 91 67.0
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 2.3e-25 119.8 93 65.6
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 3.0e-25 119.4 92 66.3
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 4.0e-25 119.0 90 67.8
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 4.0e-25 119.0 90 67.8
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.6e-24 116.3 93 63.4
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 7.5e-24 114.8 93 65.6
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.3e-23 114.0 93 65.6
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 2.0e-21 106.7 79 69.6
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.9e-21 105.1 97 59.8
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 8.0e-18 94.7 87 54.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.0e-17 94.4 87 52.9
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.3e-17 93.2 91 53.8
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 3.0e-17 92.8 92 53.3
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.0e-17 92.8 87 51.7
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 4.0e-17 92.4 91 52.7
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 4.0e-17 92.4 90 53.3
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.0e-17 92.4 92 52.2
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.0e-17 92.4 92 52.2
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 4.0e-17 92.4 92 53.3
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.0e-17 92.4 91 51.6
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.0e-17 92.4 94 50.0
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 5.2e-17 92.0 91 52.7
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 5.2e-17 92.0 92 52.2
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 6.8e-17 91.7 85 52.9
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 6.8e-17 91.7 90 53.3
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 6.8e-17 91.7 87 52.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 8.9e-17 91.3 92 52.2
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 8.9e-17 91.3 92 52.2
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 8.9e-17 91.3 92 52.2
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 8.9e-17 91.3 94 52.1
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 8.9e-17 91.3 87 52.9
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.9e-17 91.3 87 52.9
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 8.9e-17 91.3 89 50.6
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-16 90.9 90 53.3
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.5e-16 90.5 91 49.5
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.0e-16 90.1 90 52.2
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 2.0e-16 90.1 90 52.2
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.0e-16 90.1 90 52.2
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.0e-16 90.1 90 52.2
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.0e-16 90.1 90 52.2
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 2.0e-16 90.1 89 52.8
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-16 90.1 89 52.8
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-16 90.1 89 52.8
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.0e-16 90.1 92 48.9
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 2.0e-16 90.1 92 48.9
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 2.0e-16 90.1 89 50.6
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.0e-16 90.1 91 50.5
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.0e-16 90.1 89 49.4
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 2.6e-16 89.7 85 54.1
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 3.4e-16 89.4 68 66.2
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.4e-16 89.4 89 52.8
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 3.4e-16 89.4 87 51.7
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 4.4e-16 89.0 87 49.4
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.4e-16 89.0 91 51.6
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.4e-16 89.0 87 50.6
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.4e-16 89.0 87 50.6
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 5.7e-16 88.6 87 49.4
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 5.7e-16 88.6 91 47.3
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 5.7e-16 88.6 91 47.3
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 5.7e-16 88.6 87 49.4
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 5.7e-16 88.6 85 50.6
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 7.5e-16 88.2 89 51.7
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 7.5e-16 88.2 61 75.4
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 7.5e-16 88.2 87 48.3
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.3e-15 87.4 85 50.6
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.3e-15 87.4 87 49.4
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.7e-15 87.0 91 46.2
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.7e-15 87.0 85 49.4
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 2.2e-15 86.7 89 49.4
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 2.2e-15 86.7 85 51.8
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.2e-15 86.7 85 52.9
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.8e-15 86.3 85 48.2
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 3.7e-15 85.9 91 47.3
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.7e-15 85.9 89 47.2
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 3.7e-15 85.9 89 47.2
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 4.9e-15 85.5 89 46.1
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 4.9e-15 85.5 89 49.4
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 4.9e-15 85.5 87 47.1
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 6.3e-15 85.1 89 49.4
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 6.3e-15 85.1 85 49.4
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 8.3e-15 84.7 91 46.2
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 8.3e-15 84.7 93 53.8
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 8.3e-15 84.7 87 49.4
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.1e-14 84.3 96 47.9
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.8e-14 83.6 87 48.3
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 2.4e-14 83.2 89 46.1
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.1e-14 82.8 85 47.1
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 7.0e-14 81.6 87 47.1
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.6e-13 80.5 90 46.7
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 2.7e-13 79.7 87 52.9
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 3.5e-13 79.3 117 40.2
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 4.5e-13 79.0 56 67.9
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 2.3e-12 76.6 85 44.7
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.9e-12 76.3 57 64.9
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 3.8e-12 75.9 72 55.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.0e-12 75.5 73 53.4
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.3e-11 72.8 108 38.9
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.2e-10 70.9 131 35.9
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.8e-10 69.7 84 41.7
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.0e-09 67.8 69 49.3
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.4e-09 67.4 60 55.0
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 5.2e-09 65.5 61 54.1
BcaC08g46443 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-08 64.3 35 85.7
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.2e-08 64.3 60 56.7
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.2e-08 64.3 109 36.7
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 2.0e-08 63.5 71 43.7
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.6e-08 63.2 39 84.6
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.4e-08 62.8 41 78.0
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 4.4e-08 62.4 59 50.8
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 7.5e-08 61.6 60 55.0
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 2.9e-07 59.7 60 46.7
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 8.3e-07 58.2 62 45.2
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 8.3e-07 58.2 60 48.3
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.1e-06 57.8 87 34.5
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 4.1e-06 55.8 84 38.1


User provided reference genes

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