Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1826.6 885 100.0
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1654.8 888 91.1
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1645.2 887 90.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1584.7 887 86.9
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1539.6 926 82.4
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1536.5 896 84.4
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1536.2 893 84.3
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1535.4 893 84.2
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1535.0 893 84.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1483.4 906 80.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1430.6 895 80.8
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1369.4 887 75.4
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1263.4 813 74.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1259.2 809 74.0
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1254.6 808 74.0
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 811 73.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1224.2 813 72.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1222.2 810 72.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1218.8 811 71.6
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 841 70.3
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1209.1 812 71.8
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1207.6 816 71.4
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1206.4 888 65.7
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1196.4 885 64.6
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1196.0 885 64.6
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1192.9 885 64.4
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1191.8 885 64.9
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 885 63.8
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1187.9 884 64.8
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1182.9 886 63.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1179.1 884 63.9
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 888 63.7
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 885 63.3
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1167.9 886 64.1
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1164.1 881 63.3
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1163.7 884 62.6
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1162.1 885 62.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 889 62.3
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1161.4 884 62.4
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1161.0 886 63.3
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1159.1 886 62.8
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1159.1 886 62.8
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1157.5 888 62.7
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1156.7 818 68.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 762 72.7
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1151.0 887 62.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1143.3 886 62.2
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1140.6 843 63.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1139.4 896 61.0
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1138.3 887 62.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1137.1 887 61.2
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1135.2 887 61.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 917 60.1
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 922 60.4
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1130.2 904 61.0
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 847 64.1
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1127.1 885 61.8
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1125.9 859 62.7
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1124.8 886 61.3
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1122.5 889 60.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1122.1 887 61.0
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 840 63.1
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 845 63.1
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 886 60.5
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 1006 55.5
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 887 61.3
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 888 60.6
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1112.8 889 62.0
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1111.7 886 59.9
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1110.1 886 60.4
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 890 61.5
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 887 60.7
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1107.8 887 60.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1104.4 884 60.2
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 883 61.4
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 889 61.1
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1102.4 836 65.0
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1101.7 885 60.0
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1098.2 886 61.3
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1095.5 887 59.9
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1095.5 889 59.6
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1095.5 886 59.4
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1089.7 886 59.6
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1085.9 910 59.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1085.5 886 59.4
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1082.0 889 59.3
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1078.5 889 58.6
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1078.5 888 58.7
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 842 60.6
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 6.1e-312 1074.7 888 58.4
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.2e-311 1073.2 896 58.6
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 3.5e-310 1068.1 887 59.5
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.3e-309 1065.4 887 59.3
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 5.1e-309 1064.3 885 58.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 5.6e-308 1060.8 887 57.7
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 4.2e-303 1044.6 891 57.6
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.9e-301 1038.1 906 57.8
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 5.6e-300 1034.2 885 57.9
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 6.2e-299 1030.8 888 58.0
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 3.1e-298 1028.5 890 56.6
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 9.0e-298 1026.9 883 57.5
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 9.0e-298 1026.9 893 55.9
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 4.4e-297 1024.6 882 56.8
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.2e-296 1022.3 783 61.0
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.6e-294 1016.1 758 64.4
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 5.3e-290 1001.1 839 55.9
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 3.4e-289 998.4 801 57.7
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.5e-289 998.0 873 57.2
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.9e-288 995.3 915 54.4
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 8.4e-288 993.8 801 62.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.2e-286 989.9 749 63.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.3e-285 986.5 880 55.7
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.8e-285 986.1 803 57.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 2.6e-281 972.2 887 54.9
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.3e-280 969.9 800 60.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.2e-280 969.1 853 54.5
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 2.3e-277 959.1 950 51.6
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.9e-271 939.5 476 93.1
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 4.2e-263 911.8 826 56.9
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 8.2e-251 870.9 894 50.6
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 5.2e-245 851.7 896 48.1
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.1e-239 833.9 688 60.2
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.4e-237 827.0 849 48.2
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.0e-232 810.8 805 53.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.9e-224 782.7 807 46.8
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.6e-216 755.0 859 43.9
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.1e-214 750.0 633 58.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.1e-213 746.1 656 55.9
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.0e-200 704.5 699 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.1e-197 694.5 702 49.3
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.5e-193 679.5 693 51.5
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-192 677.9 432 71.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.2e-182 642.1 445 65.2
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 3.4e-172 609.8 605 54.7
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 6.4e-171 605.5 626 50.8
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 4.8e-166 589.3 427 64.4
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.7e-163 580.9 508 56.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.7e-161 573.5 875 37.7
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.5e-159 567.8 560 50.5
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 9.7e-127 458.8 470 51.7
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 9.4e-122 442.2 321 62.3
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 4.1e-117 426.8 442 50.2
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 5.4e-117 426.4 811 35.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 5.0e-115 419.9 270 71.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 7.0e-109 399.4 904 33.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-107 395.6 371 53.6
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.1e-101 375.6 407 48.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 4.9e-94 350.1 390 48.5
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.0e-91 342.4 429 46.6
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 3.5e-84 317.4 243 60.5
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.1e-80 304.3 569 33.2
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 3.5e-68 264.2 202 60.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.1e-56 226.1 209 55.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.2e-53 214.5 166 59.6
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 7.4e-50 203.4 137 67.9
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 9.0e-48 196.4 101 82.2
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.4e-39 167.9 99 75.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 5.5e-37 160.6 194 44.3
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.2e-28 132.9 81 72.8
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 8.8e-27 126.7 186 38.7
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.1e-26 126.3 87 71.3
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 3.8e-22 111.3 70 75.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.1e-21 109.8 56 91.1
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 7.2e-21 107.1 55 90.9
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 8.8e-19 100.1 127 48.0
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.1e-18 99.8 84 54.8
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 4.4e-18 97.8 97 52.6
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.9e-15 87.4 60 66.7
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.9e-14 85.1 84 57.1
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.2e-12 79.7 103 43.7
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.6e-12 78.2 45 71.1
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 4.0e-11 74.7 49 67.3
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.2e-11 74.3 36 86.1
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 6.7e-11 73.9 116 37.9
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.7e-06 59.3 113 34.5


User provided reference genes

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