Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G19240 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 2.1e-35 151.8 74 100.0
CARHR203430 Cardamine hirsuta HOM05D004317 ORTHO05D005031 4.8e-11 70.9 57 70.2
AT5G09910 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 6.2e-11 70.5 57 71.9
AL6G20330 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 1.1e-10 69.7 57 70.2
Sabra07G0067200 Salix brachista HOM05D004317 ORTHO05D005031 1.4e-10 69.3 57 68.4
Carub.0006s0835 Capsella rubella HOM05D004317 ORTHO05D005031 4.0e-10 67.8 57 68.4
ATR1120G075 Amborella trichopoda HOM05D004317 ORTHO05D005031 5.3e-10 67.4 60 63.3
COL.COLO4_10999 Corchorus olitorius HOM05D004317 ORTHO05D005031 5.3e-10 67.4 57 66.7
Dinv19475 Davidia involucrata HOM05D004317 ORTHO05D005031 6.9e-10 67.0 67 56.7
Gohir.A11G053900 Gossypium hirsutum HOM05D004317 ORTHO05D005031 6.9e-10 67.0 59 64.4
Gohir.D11G057400 Gossypium hirsutum HOM05D004317 ORTHO05D005031 6.9e-10 67.0 59 64.4
Gorai.007G062600 Gossypium raimondii HOM05D004317 ORTHO05D005031 6.9e-10 67.0 59 64.4
Glyma.05G184400 Glycine max HOM05D004317 ORTHO05D005031 9.0e-10 66.6 57 66.7
Oeu028366.1 Olea europaea HOM05D004317 ORTHO05D005031 9.0e-10 66.6 57 64.9
Potri.007G080100 Populus trichocarpa HOM05D004317 ORTHO05D005031 9.0e-10 66.6 57 64.9
Aa31LG1G17120 Aethionema arabicum HOM05D004317 ORTHO05D005031 1.2e-09 66.2 57 66.7
THA.LOC104799321 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 1.2e-09 66.2 57 66.7
AL8G42280 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
AT5G64813 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
BcaC01g02714 Brassica carinata HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
A06p31600 Brassica napus HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
C03p61360 Brassica napus HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
BolC3t18396H Brassica oleracea HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
BraA06t26097Z Brassica rapa HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
Carub.0008s2563 Capsella rubella HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
Sp2g27880 Schrenkiella parvula HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
THA.LOC104819313 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 1.5e-09 65.9 57 64.9
MSTRG.2526 Avicennia marina HOM05D004317 ORTHO05D005031 2.0e-09 65.5 57 64.9
FAN19G1483 Fragaria x ananassa HOM05D004317 ORTHO05D005031 2.0e-09 65.5 57 66.7
FAN26G1550 Fragaria x ananassa HOM05D004317 ORTHO05D005031 2.0e-09 65.5 57 66.7
FAN28G2916 Fragaria x ananassa HOM05D004317 ORTHO05D005031 2.0e-09 65.5 57 66.7
CARHR278810 Cardamine hirsuta HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
Cc11_g00180 Coffea canephora HOM05D004317 ORTHO05D005031 2.6e-09 65.1 67 55.2
Duzib147G1288 Durio zibethinus HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
Duzib264G0693 Durio zibethinus HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
Lj4A864T19 Lonicera japonica HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
MD15G1445400 Malus domestica HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
Psat7g050920 Pisum sativum HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
Potri.005G085100 Populus trichocarpa HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 63.2
Prupe.1G587300 Prunus persica HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
Sp6g33500 Schrenkiella parvula HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 66.7
Thecc.01G114600 Theobroma cacao HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
TPR.G2235 Trifolium pratense HOM05D004317 ORTHO05D005031 2.6e-09 65.1 57 64.9
CANSAT01G1092 Cannabis sativa HOM05D004317 ORTHO05D005031 3.4e-09 64.7 57 64.9
Thhalv10004519m.g Eutrema salsugineum HOM05D004317 ORTHO05D005031 3.4e-09 64.7 57 64.9
RcHm_v2.0_Chr2g0117121 Rosa chinensis HOM05D004317 ORTHO05D005031 3.4e-09 64.7 57 64.9
Sc07g0001570 Simmondsia chinensis HOM05D004317 ORTHO05D005031 3.4e-09 64.7 57 64.9
BcaB02g09831 Brassica carinata HOM05D004317 ORTHO05D005031 4.5e-09 64.3 57 63.2
FvH4_1g22810 Fragaria vesca HOM05D004317 ORTHO05D005031 4.5e-09 64.3 57 64.9
Sc03g0004440 Simmondsia chinensis HOM05D004317 ORTHO05D005031 4.5e-09 64.3 60 63.3
SGA_v2.0_scaffold2G01290 Striga asiatica HOM05D004317 ORTHO05D005031 4.5e-09 64.3 57 63.2
Dinv42682 Davidia involucrata HOM05D004317 ORTHO05D005031 5.8e-09 63.9 57 61.4
Lj4g0017689 Lotus japonicus HOM05D004317 ORTHO05D005031 5.8e-09 63.9 57 64.9
MD08G1250200 Malus domestica HOM05D004317 ORTHO05D005031 5.8e-09 63.9 56 64.3
Nn1g05158 Nelumbo nucifera HOM05D004317 ORTHO05D005031 5.8e-09 63.9 60 58.3
Sabra05G0069900 Salix brachista HOM05D004317 ORTHO05D005031 5.8e-09 63.9 57 63.2
TAR625G1069 Trochodendron aralioides HOM05D004317 ORTHO05D005031 5.8e-09 63.9 57 66.7
Ca_17692_v3 Cicer arietinum L. HOM05D004317 ORTHO05D005031 7.6e-09 63.5 57 63.2
Ciclev10026038m.g Citrus clementina HOM05D004317 ORTHO05D005031 7.6e-09 63.5 57 61.4
Lsat_1_v5_gn_6_7740 Lactuca sativa HOM05D004317 ORTHO05D005031 7.6e-09 63.5 57 61.4
Peaxi162Scf00270g00910 Petunia axillaris HOM05D004317 ORTHO05D005031 7.6e-09 63.5 54 66.7
Cpa.g.sc191.9 Carica papaya HOM05D004317 ORTHO05D005031 1.0e-08 63.2 57 61.4
DCAR_001376 Daucus carota HOM05D004317 ORTHO05D005031 1.0e-08 63.2 72 51.4
HanXRQChr02g0047931 Helianthus annuus HOM05D004317 ORTHO05D005031 1.0e-08 63.2 54 63.0
Lalb_Chr12g0203501 Lupinus albus HOM05D004317 ORTHO05D005031 1.0e-08 63.2 57 63.2
Medtr8g091980 Medicago truncatula HOM05D004317 ORTHO05D005031 1.0e-08 63.2 57 63.2
Sed0024973 Sechium edule HOM05D004317 ORTHO05D005031 1.0e-08 63.2 67 53.7
Duzib187G1335 Durio zibethinus HOM05D004317 ORTHO05D005031 1.3e-08 62.8 57 63.2
Eucgr.H04871 Eucalyptus grandis HOM05D004317 ORTHO05D005031 1.3e-08 62.8 67 53.7
Manes.12G143400 Manihot esculenta HOM05D004317 ORTHO05D005031 1.3e-08 62.8 57 61.4
Rhsim10G0148900 Rhododendron simsii HOM05D004317 ORTHO05D005031 1.3e-08 62.8 57 61.4
TWI79G1778 Tripterygium wilfordii HOM05D004317 ORTHO05D005031 1.3e-08 62.8 57 63.2
vmacro12895 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 1.3e-08 62.8 57 61.4
Ah.02g125940 Amaranthus hybridus HOM05D004317 ORTHO05D005031 1.7e-08 62.4 57 61.4
Gohir.A11G197500 Gossypium hirsutum HOM05D004317 ORTHO05D005031 1.7e-08 62.4 57 61.4
Nitab4.5_0000184g0250 Nicotiana tabacum HOM05D004317 ORTHO05D005031 1.7e-08 62.4 57 63.2
Nitab4.5_0004977g0020 Nicotiana tabacum HOM05D004317 ORTHO05D005031 1.7e-08 62.4 57 63.2
vmacro18639 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 1.7e-08 62.4 57 61.4
VMungo0251G1621 Vigna mungo HOM05D004317 ORTHO05D005031 2.2e-08 62.0 57 61.4
BcaC04g23277 Brassica carinata HOM05D004317 ORTHO05D005031 2.9e-08 61.6 58 63.8
A09p08860 Brassica napus HOM05D004317 ORTHO05D005031 2.9e-08 61.6 58 63.8
C09p10280 Brassica napus HOM05D004317 ORTHO05D005031 2.9e-08 61.6 58 63.8
BolC9t53928H Brassica oleracea HOM05D004317 ORTHO05D005031 2.9e-08 61.6 58 63.8
BraA09t36537Z Brassica rapa HOM05D004317 ORTHO05D005031 2.9e-08 61.6 58 63.8
Glyma.08G142300 Glycine max HOM05D004317 ORTHO05D005031 2.9e-08 61.6 57 61.4
PSO170G2871 Papaver somniferum HOM05D004317 ORTHO05D005031 2.9e-08 61.6 63 57.1
PSO210G1492 Papaver somniferum HOM05D004317 ORTHO05D005031 2.9e-08 61.6 63 57.1
MELO3C020962.2 Cucumis melo HOM05D004317 ORTHO05D005031 3.8e-08 61.2 67 53.7
TAR381G0083 Trochodendron aralioides HOM05D004317 ORTHO05D005031 3.8e-08 61.2 57 63.2
ClCG02G000980 Citrullus lanatus HOM05D004317 ORTHO05D005031 4.9e-08 60.8 67 53.7
CsaV3_2G017700 Cucumis sativus L. HOM05D004317 ORTHO05D005031 4.9e-08 60.8 67 53.7
Peaxi162Scf00106g01615 Petunia axillaris HOM05D004317 ORTHO05D005031 4.9e-08 60.8 54 63.0
Phvul.002G265300 Phaseolus vulgaris HOM05D004317 ORTHO05D005031 4.9e-08 60.8 57 63.2
BcaB04g19996 Brassica carinata HOM05D004317 ORTHO05D005031 6.5e-08 60.5 58 63.8
DCAR_000764 Daucus carota HOM05D004317 ORTHO05D005031 6.5e-08 60.5 54 64.8
FAN23G2660 Fragaria x ananassa HOM05D004317 ORTHO05D005031 6.5e-08 60.5 57 61.4
Oeu031971.2 Olea europaea HOM05D004317 ORTHO05D005031 6.5e-08 60.5 57 61.4
Rhsim07G0116100 Rhododendron simsii HOM05D004317 ORTHO05D005031 6.5e-08 60.5 57 57.9
CAN.G241.17 Capsicum annuum HOM05D004317 ORTHO05D005031 8.4e-08 60.1 57 61.4
CiPaw.03G133600 Carya illinoinensis HOM05D004317 ORTHO05D005031 8.4e-08 60.1 57 59.6
QL06p031876 Quercus lobata HOM05D004317 ORTHO05D005031 8.4e-08 60.1 57 61.4
CiPaw.04G091000 Carya illinoinensis HOM05D004317 ORTHO05D005031 1.1e-07 59.7 57 61.4
ECA240G0243 Erigeron canadensis HOM05D004317 ORTHO05D005031 1.1e-07 59.7 57 59.6
Lalb_Chr11g0068101 Lupinus albus HOM05D004317 ORTHO05D005031 1.1e-07 59.7 57 59.6
MBI01_g44371_MAGBIO Magnolia biondii HOM05D004317 ORTHO05D005031 1.1e-07 59.7 56 64.3
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 1.4e-07 59.3 57 61.4
arahy.Tifrunner.gnm1.ann1.N9CCL6 Arachis hypogaea HOM05D004317 ORTHO05D005031 1.4e-07 59.3 57 61.4
EL10Ac6g14771 Beta vulgaris HOM05D004317 ORTHO05D005031 1.4e-07 59.3 57 57.9
HanXRQChr03g0078021 Helianthus annuus HOM05D004317 ORTHO05D005031 1.4e-07 59.3 54 61.1
Lalb_Chr13g0296231 Lupinus albus HOM05D004317 ORTHO05D005031 1.4e-07 59.3 57 59.6
Oeu015853.1 Olea europaea HOM05D004317 ORTHO05D005031 1.4e-07 59.3 57 61.4
Rhsim08G0005500 Rhododendron simsii HOM05D004317 ORTHO05D005031 1.9e-07 58.9 54 59.3
MSTRG.23310 Avicennia marina HOM05D004317 ORTHO05D005031 2.5e-07 58.5 54 57.4
Nn5g28875 Nelumbo nucifera HOM05D004317 ORTHO05D005031 2.5e-07 58.5 57 57.9
Sed0006410 Sechium edule HOM05D004317 ORTHO05D005031 2.5e-07 58.5 57 57.9
Solyc04g051700.3 Solanum lycopersicum HOM05D004317 ORTHO05D005031 2.5e-07 58.5 57 59.6
Sopen04g023080 Solanum pennellii HOM05D004317 ORTHO05D005031 2.5e-07 58.5 57 59.6
PGSC0003DMG402031196 Solanum tuberosum HOM05D004317 ORTHO05D005031 2.5e-07 58.5 57 59.6
GSVIVG01022244001 Vitis vinifera HOM05D004317 ORTHO05D005031 2.5e-07 58.5 57 59.6
Atru.chr4.2810 Acer truncatum HOM05D004317 ORTHO05D005031 3.2e-07 58.2 57 59.6
Gohir.D11G232000 Gossypium hirsutum HOM05D004317 ORTHO05D005031 4.2e-07 57.8 57 57.9
Gorai.007G245100 Gossypium raimondii HOM05D004317 ORTHO05D005031 4.2e-07 57.8 57 57.9
Lj2C567G4 Lonicera japonica HOM05D004317 ORTHO05D005031 4.2e-07 57.8 67 49.3
arahy.Tifrunner.gnm1.ann1.8U6WSJ Arachis hypogaea HOM05D004317 ORTHO05D005031 5.5e-07 57.4 67 52.2
arahy.Tifrunner.gnm1.ann1.QW6G0A Arachis hypogaea HOM05D004317 ORTHO05D005031 5.5e-07 57.4 67 52.2
AUR62003298 Chenopodium quinoa HOM05D004317 ORTHO05D005031 5.5e-07 57.4 57 56.1
AUR62027164 Chenopodium quinoa HOM05D004317 ORTHO05D005031 5.5e-07 57.4 57 56.1
Migut.H02443 Erythranthe guttata HOM05D004317 ORTHO05D005031 5.5e-07 57.4 67 49.3
PGR102G1870 Punica granatum HOM05D004317 ORTHO05D005031 9.3e-07 56.6 57 61.4
Hund03530 Selenicereus undatus HOM05D004317 ORTHO05D005031 9.3e-07 56.6 57 57.9
Hma1.2p1_0375F.1_g138790 Hydrangea macrophylla HOM05D004317 ORTHO05D005031 1.2e-06 56.2 67 50.7
Nn3g19889 Nelumbo nucifera HOM05D004317 ORTHO05D005031 1.6e-06 55.8 57 56.1
Aqoxy6G00452 Aquilegia oxysepala HOM05D004317 ORTHO05D005031 2.1e-06 55.5 56 58.9
CDE05G1892 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 3.5e-06 54.7 57 57.9
HPP92_009117 Vanilla planifolia HOM05D004317 ORTHO05D005031 3.5e-06 54.7 67 49.3
Cfa002764 Carpinus fangiana HOM05D004317 ORTHO05D005031 4.6e-06 54.3 57 56.1
Haze_25055 Corylus avellana HOM05D004317 ORTHO05D005031 4.6e-06 54.3 57 56.1
Ah.05g168370 Amaranthus hybridus HOM05D004317 ORTHO05D005031 6.0e-06 53.9 57 57.9
EL10Ac1g01634 Beta vulgaris HOM05D004317 ORTHO05D005031 6.0e-06 53.9 57 54.4
CDE11G1235 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 6.0e-06 53.9 57 57.9
AUR62026610 Chenopodium quinoa HOM05D004317 ORTHO05D005031 7.9e-06 53.5 57 57.9
AUR62034924 Chenopodium quinoa HOM05D004317 ORTHO05D005031 7.9e-06 53.5 57 57.9


User provided reference genes

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