Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G18000 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 3.3e-83 311.6 151 100.0
AL3G17700 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.5e-32 143.3 73 100.0
AL1G34290 Arabidopsis lyrata HOM05D005376 ORTHO05D079374 5.5e-30 134.8 72 80.6
AL7G52340 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.0e-20 104.0 71 78.9
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 8.8e-20 100.9 83 67.5
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 2.2e-18 96.3 81 67.9
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 5.3e-17 91.7 84 64.3
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 2.0e-16 89.7 81 66.7
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 1.0e-15 87.4 82 65.9
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 8.5e-15 84.3 92 59.8
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 8.5e-15 84.3 92 59.8
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 8.5e-15 84.3 92 59.8
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 8.5e-15 84.3 92 59.8
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 1.9e-14 83.2 82 63.4
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 1.6e-13 80.1 82 62.2
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 1.6e-13 80.1 82 62.2
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 1.6e-13 80.1 82 62.2
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 1.0e-12 77.4 95 54.7
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 1.4e-12 77.0 83 56.6
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 1.4e-12 77.0 82 59.8
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 3.0e-12 75.9 84 57.1
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 5.2e-12 75.1 80 56.2
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 8.8e-12 74.3 79 59.5
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 2.0e-11 73.2 47 78.7
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 4.4e-11 72.0 78 60.3
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 7.5e-11 71.2 93 49.5
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 1.7e-10 70.1 48 75.0
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 2.8e-10 69.3 48 75.0
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 2.8e-10 69.3 81 55.6
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.8e-10 69.3 47 76.6
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.8e-10 69.3 47 76.6
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 4.8e-10 68.6 76 57.9
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 4.8e-10 68.6 76 57.9
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 8.2e-10 67.8 47 74.5
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 1.1e-09 67.4 96 47.9
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-09 67.4 47 74.5
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-09 67.4 47 74.5
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-09 67.4 47 74.5
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-09 67.4 47 74.5
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 1.8e-09 66.6 47 74.5
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 2.4e-09 66.2 61 63.9
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 2.4e-09 66.2 68 57.4
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.4e-09 66.2 68 58.8
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 3.1e-09 65.9 68 57.4
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 4.1e-09 65.5 48 70.8
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 4.1e-09 65.5 61 60.7
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 4.1e-09 65.5 77 50.6
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 5.3e-09 65.1 61 62.3
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 5.3e-09 65.1 48 75.0
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 7.0e-09 64.7 68 55.9
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 7.0e-09 64.7 48 70.8
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 7.0e-09 64.7 48 70.8
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 9.1e-09 64.3 41 80.5
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 1.2e-08 63.9 61 62.3
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 1.2e-08 63.9 76 53.9
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.6e-08 63.5 68 57.4
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 1.6e-08 63.5 48 70.8
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 1.6e-08 63.5 61 62.3
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 1.6e-08 63.5 59 62.7
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 2.7e-08 62.8 54 63.0
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 2.7e-08 62.8 48 66.7
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 2.7e-08 62.8 79 49.4
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 2.7e-08 62.8 84 50.0
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 2.7e-08 62.8 46 73.9
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 3.5e-08 62.4 80 57.5
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 4.5e-08 62.0 61 60.7
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 4.5e-08 62.0 48 70.8
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 4.5e-08 62.0 61 57.4
CiPaw.06G001400 Carya illinoinensis HOM05D005376 ORTHO05D006481 5.9e-08 61.6 46 67.4
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 5.9e-08 61.6 81 51.9
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 5.9e-08 61.6 83 49.4
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 5.9e-08 61.6 48 68.8
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 5.9e-08 61.6 64 57.8
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 7.7e-08 61.2 40 77.5
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 1.0e-07 60.8 43 74.4
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 1.0e-07 60.8 48 70.8
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 1.0e-07 60.8 61 60.7
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 1.3e-07 60.5 84 52.4
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 1.7e-07 60.1 92 45.7
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 1.7e-07 60.1 41 75.6
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 1.7e-07 60.1 84 46.4
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 2.2e-07 59.7 74 51.4
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 2.2e-07 59.7 63 54.0
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 2.2e-07 59.7 40 75.0
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 2.9e-07 59.3 49 69.4
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 3.8e-07 58.9 48 66.7
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 3.8e-07 58.9 84 46.4
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 3.8e-07 58.9 41 73.2
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 5.0e-07 58.5 63 54.0
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 5.0e-07 58.5 41 75.6
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 5.0e-07 58.5 84 52.4
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 5.0e-07 58.5 40 75.0
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 6.5e-07 58.2 76 48.7
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 6.5e-07 58.2 47 68.1
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 6.5e-07 58.2 84 51.2
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 6.5e-07 58.2 40 75.0
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 1.1e-06 57.4 86 47.7
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 1.1e-06 57.4 61 57.4
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.1e-06 57.4 44 68.2
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 1.5e-06 57.0 51 64.7
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 1.5e-06 57.0 83 48.2
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 1.5e-06 57.0 63 57.1
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 1.5e-06 57.0 41 73.2
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 1.9e-06 56.6 51 64.7
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 1.9e-06 56.6 40 75.0
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 2.5e-06 56.2 62 58.1
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 2.5e-06 56.2 62 58.1
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 3.2e-06 55.8 62 59.7
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 4.2e-06 55.5 41 70.7
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 4.2e-06 55.5 65 55.4
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 5.5e-06 55.1 62 56.5
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 7.2e-06 54.7 62 56.5
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 7.2e-06 54.7 61 57.4
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 7.2e-06 54.7 61 57.4
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 9.4e-06 54.3 83 49.4
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 9.4e-06 54.3 30 90.0


User provided reference genes

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