Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G17140 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 1.8e-37 158.7 77 100.0
AT2G32810 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 8.5e-19 96.7 71 71.8
Carub.0004s1424 Capsella rubella HOM05D000140 ORTHO05D000087 3.2e-18 94.7 76 71.1
AL4G28310 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 1.2e-17 92.8 71 69.0
BolC4t27711H Brassica oleracea HOM05D000140 ORTHO05D000087 1.2e-17 92.8 71 67.6
CARHR126750 Cardamine hirsuta HOM05D000140 ORTHO05D000087 3.6e-17 91.3 71 67.6
BcaB06g28635 Brassica carinata HOM05D000140 ORTHO05D000087 4.6e-17 90.9 71 67.6
C04p62370 Brassica napus HOM05D000140 ORTHO05D000087 6.1e-17 90.5 71 66.2
Thhalv10016215m.g Eutrema salsugineum HOM05D000140 ORTHO05D000087 6.1e-17 90.5 71 69.0
Sp4g15200 Schrenkiella parvula HOM05D000140 ORTHO05D000087 6.1e-17 90.5 71 64.8
A04p25310 Brassica napus HOM05D000140 ORTHO05D000087 2.3e-16 88.6 71 66.2
BraA04t18034Z Brassica rapa HOM05D000140 ORTHO05D000087 2.3e-16 88.6 71 66.2
Aa31LG5G4480 Aethionema arabicum HOM05D000140 ORTHO05D000087 8.2e-14 80.1 71 60.6
Eucgr.H00038 Eucalyptus grandis HOM05D000140 ORTHO05D000087 6.9e-13 77.0 70 54.3
Sc19g0007060 Simmondsia chinensis HOM05D000140 ORTHO05D000087 1.5e-12 75.9 73 50.7
Sc19g0007340 Simmondsia chinensis HOM05D000140 ORTHO05D000087 1.5e-12 75.9 73 50.7
FAN22G0778 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.0e-12 75.5 73 50.7
THA.LOC104801021 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 2.6e-12 75.1 75 53.3
FvH4_4g13490 Fragaria vesca HOM05D000140 ORTHO05D000087 4.5e-12 74.3 73 49.3
FAN07G1342 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.5e-12 74.3 73 49.3
FAN12G2000 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.5e-12 74.3 73 49.3
FAN17G0523 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.5e-12 74.3 73 49.3
COL.COLO4_20195 Corchorus olitorius HOM05D000140 ORTHO05D000087 7.7e-12 73.6 73 50.7
Actinidia35852 Actinidia chinensis HOM05D000140 ORTHO05D000087 1.0e-11 73.2 71 50.7
Duzib212G0855 Durio zibethinus HOM05D000140 ORTHO05D000087 1.0e-11 73.2 71 53.5
CsaV3_3G010830 Cucumis sativus L. HOM05D000140 ORTHO05D000087 1.3e-11 72.8 71 52.1
BcaB06g28638 Brassica carinata HOM05D000140 ORTHO05D000087 2.2e-11 72.0 60 61.7
Ciclev10004268m.g Citrus clementina HOM05D000140 ORTHO05D000087 2.2e-11 72.0 73 49.3
QL06p026513 Quercus lobata HOM05D000140 ORTHO05D000087 3.8e-11 71.2 72 50.0
MELO3C006301.2 Cucumis melo HOM05D000140 ORTHO05D000087 5.0e-11 70.9 71 50.7
ClCG05G003200 Citrullus lanatus HOM05D000140 ORTHO05D000087 6.5e-11 70.5 70 48.6
Thecc.04G198500 Theobroma cacao HOM05D000140 ORTHO05D000087 6.5e-11 70.5 73 49.3
GSVIVG01020995001 Vitis vinifera HOM05D000140 ORTHO05D000087 1.9e-10 68.9 72 48.6
Haze_11637 Corylus avellana HOM05D000140 ORTHO05D000087 2.5e-10 68.6 80 48.8
MD13G1283100 Malus domestica HOM05D000140 ORTHO05D000087 2.5e-10 68.6 71 49.3
Potri.017G057900 Populus trichocarpa HOM05D000140 ORTHO05D000087 2.5e-10 68.6 77 45.5
BcaC02g07884 Brassica carinata HOM05D000140 ORTHO05D000087 3.2e-10 68.2 60 60.0
Sabra17G0051000 Salix brachista HOM05D000140 ORTHO05D000087 3.2e-10 68.2 73 50.7
Cfa014949 Carpinus fangiana HOM05D000140 ORTHO05D000087 4.2e-10 67.8 77 48.1
DCAR_030816 Daucus carota HOM05D000140 ORTHO05D000087 5.5e-10 67.4 70 47.1
RcHm_v2.0_Chr4g0414111 Rosa chinensis HOM05D000140 ORTHO05D000087 5.5e-10 67.4 73 43.8
Dinv27212 Davidia involucrata HOM05D000140 ORTHO05D000087 7.2e-10 67.0 73 47.9
Gohir.D10G140000 Gossypium hirsutum HOM05D000140 ORTHO05D000087 7.2e-10 67.0 73 47.9
EL10Ac3g07472 Beta vulgaris HOM05D000140 ORTHO05D000087 9.4e-10 66.6 71 46.5
Lj4g0009445 Lotus japonicus HOM05D000140 ORTHO05D000087 9.4e-10 66.6 73 49.3
Cpa.g.sc83.27 Carica papaya HOM05D000140 ORTHO05D000087 1.2e-09 66.2 70 50.0
Glyma.08G111000 Glycine max HOM05D000140 ORTHO05D000087 1.2e-09 66.2 73 45.2
Gorai.011G155500 Gossypium raimondii HOM05D000140 ORTHO05D000087 1.2e-09 66.2 73 47.9
Manes.03G145400 Manihot esculenta HOM05D000140 ORTHO05D000087 1.2e-09 66.2 73 47.9
AUR62018574 Chenopodium quinoa HOM05D000140 ORTHO05D000087 2.1e-09 65.5 71 46.5
Lalb_Chr12g0205561 Lupinus albus HOM05D000140 ORTHO05D000087 2.1e-09 65.5 71 46.5
Sed0001485 Sechium edule HOM05D000140 ORTHO05D000087 2.7e-09 65.1 71 45.1
Lj6C393G5 Lonicera japonica HOM05D000140 ORTHO05D000087 3.6e-09 64.7 73 46.6
Manes.15G055700 Manihot esculenta HOM05D000140 ORTHO05D000087 3.6e-09 64.7 71 47.9
PSO017G5183 Papaver somniferum HOM05D000140 ORTHO05D000087 3.6e-09 64.7 68 50.0
VMungo0251G1026 Vigna mungo HOM05D000140 ORTHO05D000087 3.6e-09 64.7 73 46.6
Atru.chr4.1606 Acer truncatum HOM05D000140 ORTHO05D000087 6.1e-09 63.9 77 44.2
Lj6C393G2 Lonicera japonica HOM05D000140 ORTHO05D000087 6.1e-09 63.9 73 43.8
HanXRQChr07g0185491 Helianthus annuus HOM05D000140 ORTHO05D000087 7.9e-09 63.5 68 47.1
Prupe.1G160600 Prunus persica HOM05D000140 ORTHO05D000087 7.9e-09 63.5 73 45.2
PGR142G3771 Punica granatum HOM05D000140 ORTHO05D000087 7.9e-09 63.5 77 44.2
AUR62020842 Chenopodium quinoa HOM05D000140 ORTHO05D000087 1.4e-08 62.8 71 46.5
DCAR_030814 Daucus carota HOM05D000140 ORTHO05D000087 1.4e-08 62.8 70 41.4
TWI73G0595 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 1.4e-08 62.8 77 45.5
vmacro00450 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 1.8e-08 62.4 73 45.2
arahy.Tifrunner.gnm1.ann1.727LKT Arachis hypogaea HOM05D000140 ORTHO05D000087 2.3e-08 62.0 73 45.2
ECA233G5242 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.3e-08 62.0 73 46.6
Gohir.A10G126700 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.0e-08 61.6 73 45.2
TPR.G11850 Trifolium pratense HOM05D000140 ORTHO05D000087 3.0e-08 61.6 73 42.5
vmacro00451 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 3.9e-08 61.2 73 43.8
CDE05G2366 Ceratophyllum demersum HOM05D000140 ORTHO05D000087 5.1e-08 60.8 71 43.7
Phvul.003G050100 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 6.7e-08 60.5 73 43.8
Zm00001eb139130 Zea mays HOM05D000140 ORTHO05D000087 6.7e-08 60.5 68 44.1
Rhsim09G0058800 Rhododendron simsii HOM05D000140 ORTHO05D000087 8.8e-08 60.1 70 45.7
arahy.Tifrunner.gnm1.ann1.JMZ2BK Arachis hypogaea HOM05D000140 ORTHO05D000087 1.1e-07 59.7 73 43.8
CSS0026801 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 1.1e-07 59.7 71 42.3
Ca_17975_v3 Cicer arietinum L. HOM05D000140 ORTHO05D000087 1.1e-07 59.7 73 42.5
Psat7g074600 Pisum sativum HOM05D000140 ORTHO05D000087 1.1e-07 59.7 73 42.5
Nitab4.5_0004347g0020 Nicotiana tabacum HOM05D000140 ORTHO05D000087 2.0e-07 58.9 71 39.4
Nn3g20046 Nelumbo nucifera HOM05D000140 ORTHO05D000087 4.4e-07 57.8 73 43.8
Solyc09g092160.2 Solanum lycopersicum HOM05D000140 ORTHO05D000087 5.7e-07 57.4 70 38.6
Sopen09g035040 Solanum pennellii HOM05D000140 ORTHO05D000087 5.7e-07 57.4 70 38.6
CAN.G490.19 Capsicum annuum HOM05D000140 ORTHO05D000087 7.4e-07 57.0 73 41.1
Medtr8g085210 Medicago truncatula HOM05D000140 ORTHO05D000087 7.4e-07 57.0 74 41.9
TAR362G0239 Trochodendron aralioides HOM05D000140 ORTHO05D000087 9.7e-07 56.6 70 40.0
HPP92_008218 Vanilla planifolia HOM05D000251 ORTHO05D005532 9.7e-07 56.6 73 41.1
Nitab4.5_0001652g0130 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.3e-06 56.2 70 38.6
Os12g0429200 Oryza sativa ssp. japonica HOM05D000140 ORTHO05D000087 2.8e-06 55.1 68 42.6
Nitab4.5_0000401g0210 Nicotiana tabacum HOM05D000140 ORTHO05D000087 3.7e-06 54.7 70 38.6
SGA_v2.0_scaffold19G08766 Striga asiatica HOM05D000140 ORTHO05D000087 4.8e-06 54.3 73 39.7
CAN.G1565.9 Capsicum annuum HOM05D000140 ORTHO05D000087 8.2e-06 53.5 73 39.7


User provided reference genes

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