Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G16400 Arabidopsis lyrata HOM05D013369 ORTHO05D015330 2.1e-154 548.9 262 100.0
AT1G60250 Arabidopsis thaliana HOM05D013369 ORTHO05D015330 6.2e-106 387.9 261 73.9
Carub.0002s0500 Capsella rubella HOM05D013369 ORTHO05D015330 1.7e-74 283.5 282 55.7
BraA01t02972Z Brassica rapa HOM05D013369 ORTHO05D015330 4.5e-56 222.2 245 51.4
A01p29240 Brassica napus HOM05D013369 ORTHO05D015330 1.3e-55 220.7 245 51.0
BcaB04g20266 Brassica carinata HOM05D013369 ORTHO05D015330 8.0e-53 211.5 240 50.8
C01p37020 Brassica napus HOM05D013369 ORTHO05D015330 9.5e-30 134.8 109 56.9
BcaC09g49411 Brassica carinata HOM05D013369 ORTHO05D015330 1.1e-28 131.3 89 62.9
Carub.0002s0443 Capsella rubella HOM05D013369 ORTHO05D015330 1.5e-27 127.5 259 35.1
AL2G18300 Arabidopsis lyrata HOM05D013369 ORTHO05D015330 2.4e-25 120.2 112 53.6
CARHR052380 Cardamine hirsuta HOM05D013369 ORTHO05D015330 6.4e-10 68.9 78 46.2
BolC1t03657H Brassica oleracea HOM05D013369 ORTHO05D015330 8.4e-10 68.6 152 34.2
Manes.13G073566 Manihot esculenta HOM05D000707 ORTHO05D001462 1.6e-08 64.3 89 36.0
GSVIVG01030628001 Vitis vinifera HOM05D000707 ORTHO05D001462 3.5e-08 63.2 86 34.9
Cc05_g05160 Coffea canephora HOM05D000707 ORTHO05D001462 1.3e-07 61.2 86 34.9
Hma1.2p1_0439F.1_g153160 Hydrangea macrophylla HOM05D000707 ORTHO05D001462 1.7e-07 60.8 86 36.0
Atru.chr6.3139 Acer truncatum HOM05D000707 ORTHO05D001462 2.3e-07 60.5 88 34.1
Lj8C122T16 Lonicera japonica HOM05D000707 ORTHO05D001462 5.1e-07 59.3 86 33.7
PGSC0003DMG400013178 Solanum tuberosum HOM05D001117 ORTHO05D000930 6.6e-07 58.9 62 45.2
Actinidia24274 Actinidia chinensis HOM05D000707 ORTHO05D001462 1.5e-06 57.8 87 32.2
Solyc12g005750.1 Solanum lycopersicum HOM05D001117 ORTHO05D000930 1.5e-06 57.8 62 43.5
vmacro12230 Vaccinium macrocarpon HOM05D000707 ORTHO05D001462 1.5e-06 57.8 87 35.6
DCAR_019210 Daucus carota HOM05D001117 ORTHO05D000930 1.9e-06 57.4 59 42.4
Sabra17G0026300 Salix brachista HOM05D000707 ORTHO05D001462 1.9e-06 57.4 86 32.6
Rhsim06G0157800 Rhododendron simsii HOM05D000707 ORTHO05D001462 2.5e-06 57.0 87 35.6
Cc05_g05180 Coffea canephora HOM05D001117 ORTHO05D000930 3.3e-06 56.6 62 41.9
FAN09G1935 Fragaria x ananassa HOM05D000707 ORTHO05D001462 3.3e-06 56.6 73 35.6
Rhsim04G0056700 Rhododendron simsii HOM05D000707 ORTHO05D001462 3.3e-06 56.6 83 33.7
Solyc07g052620.1 Solanum lycopersicum HOM05D001117 ORTHO05D000930 3.3e-06 56.6 62 45.2
Sopen07g026230 Solanum pennellii HOM05D001117 ORTHO05D000930 3.3e-06 56.6 62 45.2
DCAR_019775 Daucus carota HOM05D001117 ORTHO05D000930 4.3e-06 56.2 62 40.3
FvH4_6g43570 Fragaria vesca HOM05D000707 ORTHO05D001462 4.3e-06 56.2 73 35.6
FAN02G2049 Fragaria x ananassa HOM05D000707 ORTHO05D001462 4.3e-06 56.2 73 35.6
FAN14G0208 Fragaria x ananassa HOM05D000707 ORTHO05D001462 4.3e-06 56.2 73 35.6
Phvul.005G113300 Phaseolus vulgaris HOM05D000707 ORTHO05D001462 4.3e-06 56.2 83 33.7
Potri.017G039301 Populus trichocarpa HOM05D000707 ORTHO05D001462 4.3e-06 56.2 86 32.6
Hma1.2p1_0613F.1_g189220 Hydrangea macrophylla HOM05D000707 ORTHO05D001462 5.6e-06 55.8 88 35.2
SGA_v2.0_scaffold159G37582 Striga asiatica HOM05D000707 ORTHO05D001462 5.6e-06 55.8 68 38.2
CAN.G921.1 Capsicum annuum HOM05D001117 ORTHO05D000930 7.3e-06 55.5 61 44.3
Eucgr.K00864 Eucalyptus grandis HOM05D001117 ORTHO05D000930 7.3e-06 55.5 62 38.7
FAN05G2453 Fragaria x ananassa HOM05D000707 ORTHO05D001462 7.3e-06 55.5 73 35.6
Rhsim04G0056800 Rhododendron simsii HOM05D000707 ORTHO05D001462 7.3e-06 55.5 83 33.7
Ciclev10015305m.g Citrus clementina HOM05D000707 ORTHO05D001462 9.6e-06 55.1 88 33.0
PGSC0003DMG400026169 Solanum tuberosum HOM05D001117 ORTHO05D000930 9.6e-06 55.1 61 44.3


User provided reference genes

Program Settings