Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G12120 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 1.0e-52 209.9 118 100.0
A05p41940 Brassica napus HOM05D003236 ORTHO05D003620 3.0e-31 138.7 92 82.6
BolC5t34779H Brassica oleracea HOM05D003236 ORTHO05D003620 3.9e-31 138.3 105 77.1
BraA05t22916Z Brassica rapa HOM05D003236 ORTHO05D003620 3.9e-31 138.3 92 82.6
C05p61190 Brassica napus HOM05D003236 ORTHO05D003620 3.3e-30 135.2 85 87.1
Cpa.g.sc125.28 Carica papaya HOM05D003236 ORTHO05D003620 1.6e-29 132.9 92 76.1
BcaC05g30061 Brassica carinata HOM05D003236 ORTHO05D003620 2.8e-29 132.1 92 79.3
Phvul.006G152000 Phaseolus vulgaris HOM05D003236 ORTHO05D003620 6.2e-29 131.0 91 75.8
BcaB08g36592 Brassica carinata HOM05D003236 ORTHO05D003620 8.1e-29 130.6 93 79.6
VMungo0540G1138 Vigna mungo HOM05D003236 ORTHO05D003620 1.8e-28 129.4 91 74.7
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 2.4e-28 129.0 84 82.1
AT3G06060 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 3.1e-28 128.6 75 92.0
Aa31LG5G16550 Aethionema arabicum HOM05D003236 ORTHO05D003620 5.2e-28 127.9 76 89.5
Sp3g05010 Schrenkiella parvula HOM05D003236 ORTHO05D003620 5.2e-28 127.9 92 77.2
Ciclev10005413m.g Citrus clementina HOM05D003236 ORTHO05D003620 6.9e-28 127.5 92 75.0
Glyma.15G105400 Glycine max HOM05D003236 ORTHO05D003620 8.9e-28 127.1 91 74.7
Thhalv10021124m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 1.2e-27 126.7 75 90.7
Glyma.13G207200 Glycine max HOM05D003236 ORTHO05D003620 1.2e-27 126.7 91 73.6
PGR142G1056 Punica granatum HOM05D003236 ORTHO05D003620 1.2e-27 126.7 91 73.6
Carub.0003s0550 Capsella rubella HOM05D003236 ORTHO05D003620 1.5e-27 126.3 75 92.0
Carub.0006s1753 Capsella rubella HOM05D003236 ORTHO05D003620 3.4e-27 125.2 94 76.6
CiPaw.02G093600 Carya illinoinensis HOM05D003236 ORTHO05D003620 4.4e-27 124.8 86 76.7
Eucgr.B01114 Eucalyptus grandis HOM05D003236 ORTHO05D003620 5.8e-27 124.4 86 75.6
arahy.Tifrunner.gnm1.ann1.4929ND Arachis hypogaea HOM05D003236 ORTHO05D003620 1.7e-26 122.9 93 67.7
arahy.Tifrunner.gnm1.ann1.IC6NPA Arachis hypogaea HOM05D000043 ORTHO05D001371 1.7e-26 122.9 93 67.7
Eucgr.B01115 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.7e-26 122.9 82 75.6
Lj6g0023183 Lotus japonicus HOM05D003236 ORTHO05D003620 2.2e-26 122.5 86 73.3
Prupe.6G171900 Prunus persica HOM05D003236 ORTHO05D003620 2.2e-26 122.5 84 77.4
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 3.8e-26 121.7 86 73.3
Lalb_Chr18g0056161 Lupinus albus HOM05D003236 ORTHO05D003620 4.9e-26 121.3 93 71.0
Sabra16G0185700 Salix brachista HOM05D003236 ORTHO05D003620 4.9e-26 121.3 92 66.3
AL6G30650 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 6.4e-26 120.9 94 72.3
Prupe.6G197600 Prunus persica HOM05D003236 ORTHO05D003620 6.4e-26 120.9 84 77.4
Lalb_Chr15g0087401 Lupinus albus HOM05D003236 ORTHO05D003620 8.4e-26 120.6 93 68.8
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 8.4e-26 120.6 99 69.7
AT5G19200 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 1.1e-25 120.2 92 76.1
Haze_00533 Corylus avellana HOM05D003236 ORTHO05D003620 1.9e-25 119.4 86 72.1
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 1.9e-25 119.4 101 64.4
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 2.4e-25 119.0 99 65.7
Hma1.2p1_0995F.1_g245780 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 2.4e-25 119.0 86 70.9
Psat1g182720 Pisum sativum HOM05D003236 ORTHO05D003620 2.4e-25 119.0 86 74.4
THA.LOC104818806 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 2.4e-25 119.0 92 75.0
Thhalv10014360m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 3.2e-25 118.6 94 72.3
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 5.4e-25 117.9 93 73.1
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 5.4e-25 117.9 99 64.6
THA.LOC104822305 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 5.4e-25 117.9 74 85.1
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 7.1e-25 117.5 92 69.6
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 9.3e-25 117.1 86 72.1
CARHR080570 Cardamine hirsuta HOM05D003236 ORTHO05D003620 9.3e-25 117.1 92 72.8
Haze_00167 Corylus avellana HOM05D003236 ORTHO05D003620 1.2e-24 116.7 86 72.1
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 1.2e-24 116.7 99 64.6
Medtr2g022600 Medicago truncatula HOM05D003236 ORTHO05D003620 1.2e-24 116.7 91 70.3
HPP92_015138 Vanilla planifolia HOM05D003236 ORTHO05D003620 1.2e-24 116.7 92 68.5
DCAR_027180 Daucus carota HOM05D003236 ORTHO05D003620 1.6e-24 116.3 95 68.4
Potri.010G191800 Populus trichocarpa HOM05D003236 ORTHO05D003620 1.6e-24 116.3 86 70.9
Cfa015952 Carpinus fangiana HOM05D003236 ORTHO05D003620 2.1e-24 115.9 75 78.7
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 2.1e-24 115.9 86 70.9
Sc13g0004130 Simmondsia chinensis HOM05D003236 ORTHO05D003620 2.1e-24 115.9 99 64.6
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 2.1e-24 115.9 90 68.9
PGSC0003DMG401011813 Solanum tuberosum HOM05D003236 ORTHO05D003620 2.1e-24 115.9 83 72.3
TPR.G7640 Trifolium pratense HOM05D003236 ORTHO05D003620 2.1e-24 115.9 83 74.7
Lalb_Chr20g0118481 Lupinus albus HOM05D003236 ORTHO05D003620 2.7e-24 115.5 93 68.8
PGSC0003DMG402004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 2.7e-24 115.5 89 68.5
CsaV3_3G013580 Cucumis sativus L. HOM05D003236 ORTHO05D003620 3.5e-24 115.2 86 69.8
Sabra10G0147500 Salix brachista HOM05D003236 ORTHO05D003620 4.6e-24 114.8 93 66.7
Thecc.04G030700 Theobroma cacao HOM05D003236 ORTHO05D003620 4.6e-24 114.8 81 72.8
Duzib187G1207 Durio zibethinus HOM05D003236 ORTHO05D003620 6.0e-24 114.4 81 74.1
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 6.0e-24 114.4 76 78.9
Nn4g26225 Nelumbo nucifera HOM05D003236 ORTHO05D003620 6.0e-24 114.4 96 66.7
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 7.8e-24 114.0 84 72.6
RcHm_v2.0_Chr6g0272881 Rosa chinensis HOM05D003236 ORTHO05D003620 7.8e-24 114.0 92 66.3
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 7.8e-24 114.0 93 67.7
COL.COLO4_26632 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.0e-23 113.6 81 74.1
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 1.0e-23 113.6 96 65.6
Atru.chr4.2535 Acer truncatum HOM05D003236 ORTHO05D003620 1.7e-23 112.8 70 84.3
ClCG05G011190 Citrullus lanatus HOM05D003236 ORTHO05D003620 1.7e-23 112.8 86 69.8
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 2.3e-23 112.5 97 61.9
COL.COLO4_08743 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.3e-23 112.5 86 72.1
Migut.G00306 Erythranthe guttata HOM05D003236 ORTHO05D003620 2.3e-23 112.5 93 65.6
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 3.0e-23 112.1 86 67.4
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 3.0e-23 112.1 90 67.8
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 3.9e-23 111.7 83 72.3
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 5.1e-23 111.3 87 70.1
Duzib114G0214 Durio zibethinus HOM05D003236 ORTHO05D003620 6.6e-23 110.9 81 69.1
Gorai.012G088500 Gossypium raimondii HOM05D003236 ORTHO05D003620 6.6e-23 110.9 81 70.4
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 8.7e-23 110.5 86 68.6
MD13G1185700 Malus domestica HOM05D003236 ORTHO05D003620 8.7e-23 110.5 87 70.1
Sed0017985 Sechium edule HOM05D003236 ORTHO05D003620 8.7e-23 110.5 74 77.0
Duzib199G0002 Durio zibethinus HOM05D003236 ORTHO05D003620 1.1e-22 110.2 81 67.9
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 1.1e-22 110.2 86 69.8
Lj3P750T44 Lonicera japonica HOM05D003236 ORTHO05D003620 1.1e-22 110.2 99 60.6
Gohir.A05G340100 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.5e-22 109.8 92 65.2
Gohir.D04G078600 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.5e-22 109.8 86 66.3
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 4.3e-22 108.2 71 78.9
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 4.3e-22 108.2 86 65.1
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 5.6e-22 107.8 77 72.7
COL.COLO4_20855 Corchorus olitorius HOM05D003236 ORTHO05D003620 7.3e-22 107.5 81 72.8
Eucgr.B01113 Eucalyptus grandis HOM05D003236 ORTHO05D003620 7.3e-22 107.5 68 80.9
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 7.3e-22 107.5 76 72.4
COL.COLO4_05384 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.3e-21 106.7 85 69.4
Duzib147G0392 Durio zibethinus HOM05D003236 ORTHO05D003620 1.3e-21 106.7 71 76.1
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 2.1e-21 105.9 77 71.4
RcHm_v2.0_Chr6g0272861 Rosa chinensis HOM05D003236 ORTHO05D003620 2.1e-21 105.9 86 65.1
Medtr3g098750 Medicago truncatula HOM05D003236 ORTHO05D003620 3.6e-21 105.1 82 69.5
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 3.6e-21 105.1 93 61.3
Lj3P716T36 Lonicera japonica HOM05D003236 ORTHO05D003620 4.8e-21 104.8 99 58.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 6.2e-21 104.4 68 77.9
Thecc.04G224900 Theobroma cacao HOM05D003236 ORTHO05D003620 6.2e-21 104.4 93 63.4
CiPaw.01G161600 Carya illinoinensis HOM05D003236 ORTHO05D003620 1.1e-20 103.6 68 77.9
Hma1.2p1_0447F.1_g154750 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 1.1e-20 103.6 88 62.5
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 1.4e-20 103.2 81 70.4
PSO017G3704 Papaver somniferum HOM05D003236 ORTHO05D003620 1.4e-20 103.2 75 68.0
PSO478G0559 Papaver somniferum HOM05D003236 ORTHO05D003620 1.4e-20 103.2 75 68.0
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 3.1e-20 102.1 86 64.0
MELO3C006553.2 Cucumis melo HOM05D003236 ORTHO05D003620 4.0e-20 101.7 68 76.5
Thecc.04G224800 Theobroma cacao HOM05D003236 ORTHO05D003620 5.3e-20 101.3 92 62.0
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.2e-19 100.1 81 66.7
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 1.2e-19 100.1 81 66.7
Sed0022772 Sechium edule HOM05D003236 ORTHO05D003620 1.2e-19 100.1 69 75.4
Gohir.D05G232700 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.5e-19 99.8 81 66.7
Gorai.009G240900 Gossypium raimondii HOM05D003236 ORTHO05D003620 1.5e-19 99.8 81 66.7
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 2.0e-19 99.4 68 77.9
PSO210G7458 Papaver somniferum HOM05D003236 ORTHO05D003620 2.6e-19 99.0 93 59.1
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 3.4e-19 98.6 75 68.0
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 4.5e-19 98.2 110 53.6
Hund19505 Selenicereus undatus HOM05D003236 ORTHO05D003620 4.5e-19 98.2 82 65.9
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 7.6e-19 97.4 81 64.2
Ca_00632_v3 Cicer arietinum L. HOM05D003236 ORTHO05D003620 7.6e-19 97.4 68 73.5
Dinv38409 Davidia involucrata HOM05D003236 ORTHO05D003620 7.6e-19 97.4 85 61.2
COL.COLO4_05385 Corchorus olitorius HOM05D003236 ORTHO05D003620 9.9e-19 97.1 74 68.9
PSO832G4100 Papaver somniferum HOM05D003236 ORTHO05D003620 9.9e-19 97.1 93 59.1
Os02g0701900 Oryza sativa ssp. japonica HOM05D003236 ORTHO05D003620 1.7e-18 96.3 86 60.5
A10p20430 Brassica napus HOM05D003236 ORTHO05D003620 2.2e-18 95.9 71 74.6
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 2.9e-18 95.5 66 74.2
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 4.9e-18 94.7 94 59.6
RcHm_v2.0_Chr6g0272851 Rosa chinensis HOM05D003236 ORTHO05D003620 4.9e-18 94.7 81 60.5
RcHm_v2.0_Chr6g0272751 Rosa chinensis HOM05D003236 ORTHO05D003620 6.4e-18 94.4 66 75.8
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 1.4e-17 93.2 67 73.1
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 1.9e-17 92.8 87 59.8
EL10Ac2g04006 Beta vulgaris HOM05D003236 ORTHO05D003620 3.2e-17 92.0 77 67.5
COL.COLO4_20850 Corchorus olitorius HOM05D003236 ORTHO05D003620 4.2e-17 91.7 88 64.8
Duzib147G0300 Durio zibethinus HOM05D003236 ORTHO05D003620 4.2e-17 91.7 64 73.4
RcHm_v2.0_Chr6g0272831 Rosa chinensis HOM05D003236 ORTHO05D003620 4.2e-17 91.7 87 59.8
COL.COLO4_20849 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.1e-16 89.4 90 58.9
BcaC04g18588 Brassica carinata HOM05D003236 ORTHO05D003620 7.9e-16 87.4 110 53.6
Ah.10g034980 Amaranthus hybridus HOM05D003236 ORTHO05D003620 3.0e-15 85.5 73 65.8
ATR0626G169 Amborella trichopoda HOM05D003236 ORTHO05D003620 3.0e-15 85.5 96 57.3
AUR62042438 Chenopodium quinoa HOM05D003236 ORTHO05D003620 5.1e-15 84.7 62 74.2
HanXRQChr11g0351181 Helianthus annuus HOM05D003236 ORTHO05D003620 6.7e-15 84.3 87 62.1
AL159U10030 Arabidopsis lyrata HOM05D000915 ORTHO05D003011 8.7e-15 84.0 63 73.0
AagrBONN_evm.TU.Sc2ySwM_344.2320 Anthoceros agrestis HOM05D003236 ORTHO05D003620 9.6e-14 80.5 72 61.1
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 9.6e-14 80.5 87 57.5
C09p57040 Brassica napus HOM05D003236 ORTHO05D003620 1.6e-13 79.7 105 51.4
BolC9t58571H Brassica oleracea HOM05D003236 ORTHO05D003620 4.8e-13 78.2 94 54.3
Gohir.A05G230350 Gossypium hirsutum HOM05D003236 ORTHO05D003620 4.9e-10 68.2 89 50.6
Pp3c22_14290 Physcomitrium patens HOM05D003236 ORTHO05D003620 1.9e-09 66.2 100 42.0
Rhsim02G0180400 Rhododendron simsii HOM05D003236 ORTHO05D003620 2.7e-08 62.4 46 67.4
Mapoly0005s0172 Marchantia polymorpha HOM05D003236 ORTHO05D003620 7.9e-08 60.8 109 43.1
SMO361G0773 Selaginella moellendorffii HOM05D003236 ORTHO05D003620 1.0e-07 60.5 91 46.2
SMO361G0534 Selaginella moellendorffii HOM05D003236 ORTHO05D003620 1.8e-07 59.7 91 46.2
Rhsim10G0177500 Rhododendron simsii HOM05D003236 ORTHO05D003620 6.7e-07 57.8 46 60.9
Glyma.12G174300 Glycine max HOM05D003236 ORTHO05D003620 1.1e-06 57.0 43 62.8
CBR_g32182 Chara braunii HOM05D003236 ORTHO05D003620 9.6e-06 53.9 56 55.4
SEGI_14042 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 9.6e-06 53.9 64 45.3


User provided reference genes

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