Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 1.2e-299 1032.7 625 100.0
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 3.9e-271 937.9 625 92.5
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 9.9e-243 843.6 614 83.1
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 4.1e-220 768.5 619 76.3
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 2.1e-208 729.6 610 73.8
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 1.4e-180 637.1 651 64.2
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 1.6e-179 633.6 651 65.3
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 7.7e-179 631.3 691 65.1
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 1.6e-176 623.6 621 66.2
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 5.2e-175 618.6 686 61.7
BolC9t54689H Brassica oleracea HOM05D002129 ORTHO05D002188 2.9e-170 602.8 651 62.8
Sp2g00440 Schrenkiella parvula HOM05D002129 ORTHO05D002188 3.7e-149 532.7 472 73.5
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.3e-138 497.7 703 52.1
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.7e-133 480.7 652 52.6
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 2.1e-123 447.2 665 49.6
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 2.5e-105 387.1 626 46.2
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 4.6e-99 366.3 636 44.2
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 1.1e-97 361.7 631 45.0
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 1.3e-96 358.2 638 44.4
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 4.5e-94 349.7 632 44.0
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 3.0e-90 337.0 629 44.8
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.1e-87 328.6 625 46.1
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 1.2e-86 325.1 624 46.0
Carub.0007s3360 Capsella rubella HOM05D002129 ORTHO05D002188 2.5e-84 317.4 632 45.1
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 8.2e-80 302.4 627 42.1
Sp7g00310 Schrenkiella parvula HOM05D002129 ORTHO05D002188 4.5e-70 270.0 626 37.4
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 7.7e-62 242.7 770 30.8
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.6e-59 235.0 778 31.2
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 1.2e-57 228.8 792 30.7
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 8.3e-56 222.6 749 29.5
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 9.8e-49 199.1 799 30.8
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 2.9e-48 197.6 760 28.2
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 6.4e-48 196.4 820 27.2
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 3.0e-45 187.6 751 30.9
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 8.6e-45 186.0 801 32.8
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 1.5e-44 185.3 709 28.6
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 1.2e-43 182.2 765 27.6
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 6.8e-42 176.4 643 29.2
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 1.2e-41 175.6 781 29.1
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 7.5e-41 172.9 740 28.2
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.3e-40 172.2 548 30.7
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 2.2e-40 171.4 671 28.8
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 1.1e-39 169.1 549 30.1
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 1.9e-39 168.3 911 26.2
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.2e-39 167.5 660 28.2
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 6.6e-37 159.8 645 27.8
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 8.6e-37 159.5 825 29.0
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 9.5e-36 156.0 549 29.3
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 6.2e-35 153.3 810 29.5
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 2.3e-34 151.4 678 27.3
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.1e-34 151.0 597 27.6
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 6.8e-34 149.8 744 25.8
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 2.0e-33 148.3 641 27.5
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 5.8e-33 146.7 716 25.4
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.3e-32 145.6 641 28.2
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.7e-32 145.2 237 42.2
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 1.7e-32 145.2 661 30.0
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 2.2e-32 144.8 661 30.0
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 1.9e-31 141.7 640 25.8
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 2.4e-31 141.4 484 30.4
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 3.5e-30 137.5 782 24.8
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.9e-29 134.0 735 26.4
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 3.9e-29 134.0 732 25.7
Gorai.004G135400 Gossypium raimondii HOM05D002129 ORTHO05D002188 8.6e-29 132.9 777 25.0
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 1.1e-28 132.5 714 32.2
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 5.6e-28 130.2 741 24.3
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 5.6e-28 130.2 758 24.7
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 5.6e-28 130.2 314 33.8
Gohir.A02G102300 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.6e-27 128.6 659 27.3
Gohir.D03G081800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 6.2e-27 126.7 659 27.5
Gorai.003G081800 Gossypium raimondii HOM05D002129 ORTHO05D002188 8.1e-27 126.3 659 27.0
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 1.4e-26 125.6 634 25.6
BolC6t37202H Brassica oleracea HOM05D002129 ORTHO05D002188 2.0e-25 121.7 183 45.9
Sed0025225 Sechium edule HOM05D002129 ORTHO05D002188 2.9e-24 117.9 249 37.3
Psat7g027480 Pisum sativum HOM05D002129 ORTHO05D002188 4.9e-24 117.1 862 25.4
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.4e-24 116.7 755 27.3
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 8.4e-24 116.3 751 24.0
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.1e-23 115.9 224 38.8
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.1e-23 115.9 224 38.8
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 1.1e-23 115.9 755 24.0
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 4.2e-23 114.0 682 25.5
Phvul.002G163000 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 4.2e-23 114.0 632 26.9
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 7.1e-23 113.2 744 27.7
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 2.1e-22 111.7 772 27.1
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.7e-22 111.3 765 26.5
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 3.5e-22 110.9 696 28.2
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 1.3e-21 109.0 544 30.9
Gohir.D08G132401 Gossypium hirsutum HOM05D002129 ORTHO05D002188 8.7e-21 106.3 770 23.9
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.5e-20 104.8 429 30.1
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 4.3e-20 104.0 226 36.7
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 5.6e-20 103.6 226 36.7
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 7.3e-20 103.2 226 36.3
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 7.3e-20 103.2 223 36.3
VMungo0251G1783 Vigna mungo HOM05D002129 ORTHO05D002188 7.3e-20 103.2 652 23.9
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 1.3e-19 102.4 805 22.7
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 1.3e-19 102.4 486 26.7
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 6.2e-19 100.1 601 23.5
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 6.9e-18 96.7 222 35.1
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.2e-17 95.9 746 26.7
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 3.4e-17 94.4 338 29.0
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 3.4e-17 94.4 608 24.7
Glyma.05G215000 Glycine max HOM05D002129 ORTHO05D002188 4.4e-17 94.0 723 23.5
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 7.6e-17 93.2 229 34.1
Peaxi162Scf00117g00131 Petunia axillaris HOM05D002129 ORTHO05D002188 1.7e-16 92.0 635 30.4
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 1.7e-16 92.0 487 24.0
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 2.2e-16 91.7 649 23.4
C06p20200 Brassica napus HOM05D002129 ORTHO05D002188 2.9e-16 91.3 184 41.8
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.9e-16 91.3 799 24.4
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 2.9e-16 91.3 901 24.1
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.9e-16 90.5 222 32.9
AUR62019807 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.2e-15 87.8 539 27.3
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 7.1e-15 86.7 581 23.6
HanXRQChr17g0535111 Helianthus annuus HOM05D002129 ORTHO05D002188 9.3e-15 86.3 210 33.8
Nitab4.5_0002213g0050 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.1e-14 85.1 779 26.8
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 2.1e-14 85.1 222 29.7
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 4.6e-14 84.0 277 27.4
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 1.3e-13 82.4 651 25.2
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 1.7e-13 82.0 155 41.3
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.7e-13 82.0 222 33.3
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 3.9e-13 80.9 684 23.5
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 6.6e-13 80.1 142 38.7
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 1.1e-12 79.3 493 24.3
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 1.9e-12 78.6 561 26.7
Phvul.002G296200 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 3.3e-12 77.8 667 25.5
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 3.3e-12 77.8 135 37.8
Actinidia04212 Actinidia chinensis HOM05D002129 ORTHO05D002188 4.3e-12 77.4 325 25.8
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 5.6e-12 77.0 142 38.7
Potri.001G094266 Populus trichocarpa HOM05D002129 ORTHO05D002188 5.6e-12 77.0 110 43.6
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 5.6e-12 77.0 135 37.8
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 7.3e-12 76.6 142 39.4
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 7.3e-12 76.6 603 22.2
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.1e-11 75.1 191 31.9
Oeu042386.1 Olea europaea HOM05D002129 ORTHO05D002188 2.8e-11 74.7 608 24.2
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 3.6e-11 74.3 547 23.8
Ah.12g052300 Amaranthus hybridus HOM05D002129 ORTHO05D002188 4.8e-11 73.9 569 23.7
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 4.8e-11 73.9 140 36.4
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 4.8e-11 73.9 683 24.6
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 4.8e-11 73.9 590 31.9
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 4.8e-11 73.9 142 37.3
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 6.2e-11 73.6 130 36.2
unitig_62.g23616 Utricularia gibba HOM05D002129 ORTHO05D002188 6.2e-11 73.6 200 32.0
Oeu061087.1 Olea europaea HOM05D002129 ORTHO05D002188 8.1e-11 73.2 634 24.3
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 1.1e-10 72.8 157 34.4
Potri.001G094332 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.1e-10 72.8 123 42.3
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 3.1e-10 71.2 149 40.3
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 3.1e-10 71.2 158 36.1
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 5.3e-10 70.5 598 25.9
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.2e-09 69.3 139 36.0
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 2.0e-09 68.6 142 37.3
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 3.4e-09 67.8 728 22.0
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 3.4e-09 67.8 252 27.8
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 4.5e-09 67.4 682 24.5
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 4.5e-09 67.4 158 31.0
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 7.6e-09 66.6 157 33.8
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 9.9e-09 66.2 142 34.5
EL10Ac5g12883 Beta vulgaris HOM05D002129 ORTHO05D002188 1.3e-08 65.9 610 25.9
Gorai.004G135300 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.3e-08 65.9 155 32.9
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 1.3e-08 65.9 157 31.2
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 1.7e-08 65.5 195 33.3
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 2.9e-08 64.7 630 28.6
FAN08G2732 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.8e-08 64.3 682 22.9
Oeu042385.1 Olea europaea HOM05D002129 ORTHO05D002188 3.8e-08 64.3 138 34.1
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 4.9e-08 63.9 444 23.6
Gohir.A08G099826 Gossypium hirsutum HOM05D002129 ORTHO05D002188 6.4e-08 63.5 129 35.7
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 6.4e-08 63.5 139 34.5
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 8.4e-08 63.2 617 21.4
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 1.1e-07 62.8 676 24.1
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 1.1e-07 62.8 224 29.5
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 1.1e-07 62.8 582 24.7
CSS0015477 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.4e-07 62.4 334 24.3
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 1.4e-07 62.4 544 25.9
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 2.4e-07 61.6 158 31.0
Ca_24520_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 3.2e-07 61.2 615 21.8
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 5.4e-07 60.5 227 27.3
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 9.3e-07 59.7 523 23.3
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 9.3e-07 59.7 158 29.7
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 9.3e-07 59.7 230 29.1
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.2e-06 59.3 541 26.4
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 1.2e-06 59.3 629 27.0
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 1.6e-06 58.9 147 33.3
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 1.6e-06 58.9 148 33.1
Gorai.006G208000 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.6e-06 58.9 293 27.0
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 1.6e-06 58.9 114 36.8
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.1e-06 58.5 543 25.8
TAR374G0015 Trochodendron aralioides HOM05D002129 ORTHO05D002188 3.5e-06 57.8 143 34.3
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 4.6e-06 57.4 266 28.2
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 7.9e-06 56.6 239 30.5


User provided reference genes

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