Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL26U10040 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.5e-83 311.6 162 100.0
AL3G40940 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 9.6e-65 250.4 152 86.8
AL3G40220 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.7e-61 239.6 151 84.8
AT5G24050 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 6.0e-59 231.1 151 80.1
AL3G40610 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.0e-58 230.3 152 80.3
AT3G24850 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 3.4e-54 215.3 132 83.3
Carub.0003s2555 Capsella rubella HOM05D000896 ORTHO05D000594 8.5e-45 184.1 126 77.0
CARHR101530 Cardamine hirsuta HOM05D000896 ORTHO05D000594 4.6e-43 178.3 134 69.4
Thhalv10029259m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 6.1e-35 151.4 158 53.2
BcaB07g31212 Brassica carinata HOM05D000896 ORTHO05D000594 1.8e-34 149.8 152 55.3
A09p17570 Brassica napus HOM05D000896 ORTHO05D000594 1.5e-33 146.7 150 54.0
BraA09t37387Z Brassica rapa HOM05D000896 ORTHO05D000594 5.7e-33 144.8 150 53.3
BcaC04g22224 Brassica carinata HOM05D000896 ORTHO05D000594 7.4e-33 144.4 150 54.0
AL7G52080 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.3e-29 133.7 154 53.9
Thhalv10029471m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.2e-29 132.9 132 56.8
SpUn1102_0010 Schrenkiella parvula HOM05D000896 ORTHO05D000594 2.2e-29 132.9 158 50.6
Thhalv10029136m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 8.5e-29 131.0 140 54.3
AT5G38490 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 7.2e-28 127.9 155 51.6
BolC9t55092H Brassica oleracea HOM05D000896 ORTHO05D000594 4.0e-26 122.1 150 48.7
AL5G29460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.2e-26 121.7 149 51.0
AL7G52070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.2e-26 121.7 162 50.6
CARHR217360 Cardamine hirsuta HOM05D000896 ORTHO05D000594 1.1e-25 120.6 158 49.4
C09p21870 Brassica napus HOM05D000896 ORTHO05D000594 1.5e-25 120.2 150 48.7
Carub.0001s0530 Capsella rubella HOM05D000896 ORTHO05D000594 2.6e-25 119.4 129 55.8
AL7G25460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 7.5e-25 117.9 151 47.7
AT3G49610 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.2e-24 116.3 161 50.3
Carub.0007s3741 Capsella rubella HOM05D000896 ORTHO05D000594 8.2e-24 114.4 155 51.0
BolC1t01330H Brassica oleracea HOM05D000896 ORTHO05D000594 1.8e-23 113.2 149 45.6
Carub.0007s1353 Capsella rubella HOM05D000896 ORTHO05D000594 7.0e-23 111.3 152 45.4
BcaB07g32861 Brassica carinata HOM05D000896 ORTHO05D000594 2.0e-22 109.8 168 47.0
C05p31330 Brassica napus HOM05D000896 ORTHO05D000594 2.7e-22 109.4 152 44.7
AT5G38500 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 3.5e-22 109.0 137 55.5
AL1G15890 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.2e-21 106.3 152 49.3
BcaC05g27223 Brassica carinata HOM05D000896 ORTHO05D000594 3.8e-21 105.5 166 43.4
CARHR005450 Cardamine hirsuta HOM05D000896 ORTHO05D000594 3.8e-21 105.5 151 44.4
BolC5t31856H Brassica oleracea HOM05D000896 ORTHO05D000594 6.5e-21 104.8 147 45.6
A09p34210 Brassica napus HOM05D000896 ORTHO05D000594 1.5e-20 103.6 160 44.4
BraA09t38969Z Brassica rapa HOM05D000896 ORTHO05D000594 1.5e-20 103.6 160 44.4
Thhalv10009508m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.9e-20 103.2 170 43.5
Thhalv10029469m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.6e-19 100.1 186 39.8
AL1G46070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.1e-19 99.8 148 45.3
CARHR101880 Cardamine hirsuta HOM05D000896 ORTHO05D000594 5.2e-18 95.1 113 54.9
AT1G32030 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 6.8e-18 94.7 145 43.4
AT1G05930 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.4e-17 92.0 141 47.5
Carub.0322s0001 Capsella rubella HOM05D000896 ORTHO05D000594 4.4e-17 92.0 144 44.4
Sp6g07490 Schrenkiella parvula HOM05D000896 ORTHO05D000594 4.4e-17 92.0 102 49.0
AT1G05920 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 3.1e-15 85.9 87 51.7
AL1G15880 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 9.1e-15 84.3 101 48.5
C05p04280 Brassica napus HOM05D000896 ORTHO05D000594 1.2e-14 84.0 94 45.7
BolC5t29203H Brassica oleracea HOM05D000896 ORTHO05D000594 1.2e-14 84.0 94 45.7
Carub.0001s0529 Capsella rubella HOM05D000896 ORTHO05D000594 1.6e-14 83.6 85 51.8
A10p04620 Brassica napus HOM05D000896 ORTHO05D000594 5.9e-14 81.6 94 45.7
BraA10t42727Z Brassica rapa HOM05D000896 ORTHO05D000594 5.9e-14 81.6 94 45.7
BraA10t42685Z Brassica rapa HOM05D000896 ORTHO05D000594 2.2e-13 79.7 86 52.3
Sp1g04320 Schrenkiella parvula HOM05D000896 ORTHO05D000594 6.5e-13 78.2 164 37.2
BcaC05g24385 Brassica carinata HOM05D000896 ORTHO05D000594 1.1e-12 77.4 87 51.7
C05p03790 Brassica napus HOM05D000896 ORTHO05D000594 1.1e-12 77.4 87 51.7
BolC5t29156H Brassica oleracea HOM05D000896 ORTHO05D000594 1.1e-12 77.4 87 51.7
A10p04160 Brassica napus HOM05D000896 ORTHO05D000594 2.5e-12 76.3 86 52.3
BcaC05g24319 Brassica carinata HOM05D000896 ORTHO05D000594 3.2e-12 75.9 101 44.6
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 4.2e-12 75.5 153 35.3
BcaB04g18266 Brassica carinata HOM05D000896 ORTHO05D000594 9.5e-12 74.3 90 50.0
AL123U10040 Arabidopsis lyrata HOM05D001077 ORTHO05D001053 1.6e-11 73.6 51 80.4
AL3G40900 Arabidopsis lyrata HOM05D001077 ORTHO05D001053 1.6e-11 73.6 51 80.4
Thhalv10009348m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.7e-11 72.8 93 44.1
BolC4t27593H Brassica oleracea HOM05D000896 ORTHO05D000594 3.6e-11 72.4 120 38.3
Thhalv10022269m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 3.6e-11 72.4 76 51.3
THA.LOC104827391 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.6e-11 72.4 122 36.9
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 4.7e-11 72.0 159 35.2
BcaC02g07988 Brassica carinata HOM05D000896 ORTHO05D000594 4.7e-11 72.0 127 34.6
CARHR101580 Cardamine hirsuta HOM05D000896 ORTHO05D000594 6.1e-11 71.6 62 66.1
BcaC02g07983 Brassica carinata HOM05D000896 ORTHO05D000594 8.0e-11 71.2 124 35.5
C04p61050 Brassica napus HOM05D000896 ORTHO05D000594 8.0e-11 71.2 124 35.5
BolC4t27592H Brassica oleracea HOM05D000896 ORTHO05D000594 8.0e-11 71.2 124 35.5
BraA04t17946Z Brassica rapa HOM05D000896 ORTHO05D000594 1.0e-10 70.9 130 33.8
AT2G24670 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.4e-10 70.5 120 39.2
Sp1g04760 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.4e-10 70.5 114 41.2
BcaB06g28445 Brassica carinata HOM05D000896 ORTHO05D000594 1.8e-10 70.1 176 31.8
A04p24270 Brassica napus HOM05D000896 ORTHO05D000594 1.8e-10 70.1 127 33.9
A05p13690 Brassica napus HOM05D000896 ORTHO05D000594 1.8e-10 70.1 103 41.7
BraA05t20306Z Brassica rapa HOM05D000896 ORTHO05D000594 1.8e-10 70.1 103 41.7
BcaB06g28558 Brassica carinata HOM05D000896 ORTHO05D000594 2.3e-10 69.7 110 37.3
Carub.0004s1350 Capsella rubella HOM05D000896 ORTHO05D000594 2.3e-10 69.7 147 36.7
C04p61020 Brassica napus HOM05D000896 ORTHO05D000594 3.0e-10 69.3 130 35.4
BcaC02g07987 Brassica carinata HOM05D000896 ORTHO05D000594 4.0e-10 68.9 130 33.1
C04p61060 Brassica napus HOM05D000896 ORTHO05D000594 4.0e-10 68.9 131 35.1
Thhalv10009984m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 5.2e-10 68.6 104 41.3
BcaB02g06859 Brassica carinata HOM05D000896 ORTHO05D000594 6.8e-10 68.2 135 38.5
BcaB06g28447 Brassica carinata HOM05D000896 ORTHO05D000594 6.8e-10 68.2 180 31.7
BcaB06g28546 Brassica carinata HOM05D000896 ORTHO05D000594 8.8e-10 67.8 120 37.5
BcaB01g01586 Brassica carinata HOM05D000896 ORTHO05D000594 1.5e-09 67.0 156 35.3
AL1G15520 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.0e-09 66.6 134 39.6
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 4.4e-09 65.5 145 34.5
THA.LOC104827387 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 4.4e-09 65.5 142 33.8
AL4G15340 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.7e-09 65.1 129 38.0
C04p17890 Brassica napus HOM05D000896 ORTHO05D000594 7.5e-09 64.7 90 41.1
C04p18170 Brassica napus HOM05D000896 ORTHO05D000594 7.5e-09 64.7 154 36.4
BolC4t23337H Brassica oleracea HOM05D000896 ORTHO05D000594 7.5e-09 64.7 90 41.1
BolC4t23373H Brassica oleracea HOM05D000896 ORTHO05D000594 7.5e-09 64.7 154 36.4
AL4G27540 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 9.8e-09 64.3 147 38.1
Aa31LG1G8310 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.3e-08 63.9 101 37.6
BcaC02g11280 Brassica carinata HOM05D000896 ORTHO05D000594 1.3e-08 63.9 140 37.1
Thhalv10009730m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.3e-08 63.9 100 40.0
Carub.0004s0407 Capsella rubella HOM05D000896 ORTHO05D000594 1.7e-08 63.5 124 36.3
THA.LOC104827386 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 2.2e-08 63.2 126 34.1
Aa31LG1G8320 Aethionema arabicum HOM05D000896 ORTHO05D000594 4.9e-08 62.0 97 38.1
Aa31LG1G8390 Aethionema arabicum HOM05D000896 ORTHO05D000594 4.9e-08 62.0 97 38.1
AL4G28060 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.9e-08 62.0 146 35.6
CARHR291820 Cardamine hirsuta HOM05D000896 ORTHO05D000594 4.9e-08 62.0 76 44.7
C04p59750 Brassica napus HOM05D000896 ORTHO05D000594 6.3e-08 61.6 114 39.5
BolC4t27481H Brassica oleracea HOM05D000896 ORTHO05D000594 8.3e-08 61.2 101 40.6
Sp4g14210 Schrenkiella parvula HOM05D000896 ORTHO05D000594 8.3e-08 61.2 106 39.6
Aa31LG1G8430 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.1e-07 60.8 122 32.8
AT2G27410 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.1e-07 60.8 155 34.2
BolC4t27590H Brassica oleracea HOM05D000896 ORTHO05D000594 1.1e-07 60.8 82 40.2
A09p67360 Brassica napus HOM05D000896 ORTHO05D000594 1.4e-07 60.5 112 39.3
BraA09t42067Z Brassica rapa HOM05D000896 ORTHO05D000594 1.4e-07 60.5 112 39.3
BcaB02g10422 Brassica carinata HOM05D000896 ORTHO05D000594 1.8e-07 60.1 136 35.3
BraA05t20317Z Brassica rapa HOM05D000896 ORTHO05D000594 1.8e-07 60.1 134 36.6
Aa31LG1G8280 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.4e-07 59.7 81 45.7
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.4e-07 59.7 151 29.8
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.4e-07 59.7 151 29.8
BcaC07g42126 Brassica carinata HOM05D000896 ORTHO05D000594 3.1e-07 59.3 108 38.9
C08p51670 Brassica napus HOM05D000896 ORTHO05D000594 3.1e-07 59.3 108 38.9
BolC8t52695H Brassica oleracea HOM05D000896 ORTHO05D000594 3.1e-07 59.3 108 38.9
BraA04t17871Z Brassica rapa HOM05D000896 ORTHO05D000594 3.1e-07 59.3 100 39.0
Sp1g04460 Schrenkiella parvula HOM05D000705 ORTHO05D002970 3.1e-07 59.3 122 37.7
A05p13800 Brassica napus HOM05D000896 ORTHO05D000594 4.1e-07 58.9 134 36.6
C04p61100 Brassica napus HOM05D000896 ORTHO05D000594 5.4e-07 58.5 95 37.9
Sp4g13910 Schrenkiella parvula HOM05D000896 ORTHO05D000594 5.4e-07 58.5 131 35.9
BcaC07g42125 Brassica carinata HOM05D000896 ORTHO05D000594 7.0e-07 58.2 91 42.9
Aa31LG5G5500 Aethionema arabicum HOM05D000896 ORTHO05D000594 9.2e-07 57.8 150 30.7
Aa31LG1G8400 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.2e-06 57.4 80 41.2
AL4G28420 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.6e-06 57.0 136 36.8
BcaC02g07964 Brassica carinata HOM05D000896 ORTHO05D000594 1.6e-06 57.0 99 39.4
Thhalv10009706m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.6e-06 57.0 82 40.2
Sp4g07360 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.6e-06 57.0 116 37.1
A04p23440 Brassica napus HOM05D000896 ORTHO05D000594 2.0e-06 56.6 100 38.0
BcaC05g24358 Brassica carinata HOM05D000896 ORTHO05D000594 2.7e-06 56.2 93 36.6
C04p61400 Brassica napus HOM05D000896 ORTHO05D000594 2.7e-06 56.2 99 39.4
BcaC02g11296 Brassica carinata HOM05D000896 ORTHO05D000594 3.5e-06 55.8 78 38.5
BcaC02g11297 Brassica carinata HOM05D000896 ORTHO05D000594 3.5e-06 55.8 78 38.5
Thhalv10012233m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 3.5e-06 55.8 160 30.6
BcaC02g11294 Brassica carinata HOM05D000896 ORTHO05D000594 4.5e-06 55.5 66 43.9
CARHR125380 Cardamine hirsuta HOM05D000896 ORTHO05D000594 5.9e-06 55.1 107 32.7
A04p24120 Brassica napus HOM05D000896 ORTHO05D000594 7.7e-06 54.7 109 35.8
C05p03980 Brassica napus HOM05D000896 ORTHO05D000594 7.7e-06 54.7 138 28.3


User provided reference genes

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